Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018673 Carpinus fangiana HOM05D006753 ORTHO05D008521 3.5e-65 251.5 130 100.0
QL01p000327 Quercus lobata HOM05D006753 ORTHO05D008521 1.1e-50 203.4 129 83.7
CiPaw.16G000900 Carya illinoinensis HOM05D006753 ORTHO05D008521 7.0e-42 174.1 130 74.6
Manes.04G161100 Manihot esculenta HOM05D006753 ORTHO05D008521 7.8e-41 170.6 128 68.8
MELO3C011766.2 Cucumis melo HOM05D006753 ORTHO05D008521 9.5e-39 163.7 118 71.2
CANSAT78G0938 Cannabis sativa HOM05D006753 ORTHO05D008521 1.6e-38 162.9 127 67.7
Glyma.10G288900 Glycine max HOM05D006753 ORTHO05D008521 2.8e-38 162.2 117 71.8
Phvul.007G012200 Phaseolus vulgaris HOM05D006753 ORTHO05D008521 3.6e-38 161.8 120 70.0
RcHm_v2.0_Chr4g0447151 Rosa chinensis HOM05D006753 ORTHO05D008521 4.7e-38 161.4 119 72.3
Duzib132G0454 Durio zibethinus HOM05D006753 ORTHO05D008521 1.4e-37 159.8 128 69.5
GSVIVG01034354001 Vitis vinifera HOM05D006753 ORTHO05D008521 1.4e-37 159.8 129 67.4
MD13G1001300 Malus domestica HOM05D006753 ORTHO05D008521 4.0e-37 158.3 119 71.4
FAN17G2405 Fragaria x ananassa HOM05D006753 ORTHO05D008521 5.2e-37 157.9 126 70.6
FvH4_4g37311 Fragaria vesca HOM05D006753 ORTHO05D008521 6.8e-37 157.5 126 69.8
Thecc.02G152400 Theobroma cacao HOM05D006753 ORTHO05D008521 1.2e-36 156.8 128 69.5
Sed0019092 Sechium edule HOM05D006753 ORTHO05D008521 1.5e-36 156.4 123 67.5
CsaV3_5G029140 Cucumis sativus L. HOM05D006753 ORTHO05D008521 2.0e-36 156.0 118 66.9
Duzib052G0750 Durio zibethinus HOM05D006753 ORTHO05D008521 2.0e-36 156.0 128 67.2
PGR044G1510 Punica granatum HOM05D006753 ORTHO05D008521 2.0e-36 156.0 128 67.2
COL.COLO4_33141 Corchorus olitorius HOM05D006753 ORTHO05D008521 3.4e-36 155.2 137 65.7
FAN07G1749 Fragaria x ananassa HOM05D006753 ORTHO05D008521 4.4e-36 154.8 126 69.8
Medtr1g115255 Medicago truncatula HOM05D006753 ORTHO05D008521 9.8e-36 153.7 126 65.9
TWI53G0448 Tripterygium wilfordii HOM05D006753 ORTHO05D008521 9.8e-36 153.7 128 64.8
TAR629G2108 Trochodendron aralioides HOM05D006753 ORTHO05D008521 9.8e-36 153.7 129 65.9
Nn3g18540 Nelumbo nucifera HOM05D006753 ORTHO05D008521 1.7e-35 152.9 129 65.9
ClCG11G012760 Citrullus lanatus HOM05D006753 ORTHO05D008521 6.4e-35 151.0 123 64.2
Lj5g0026283 Lotus japonicus HOM05D006753 ORTHO05D008521 6.4e-35 151.0 114 71.1
VMungo0720G0065 Vigna mungo HOM05D006753 ORTHO05D008521 6.4e-35 151.0 120 68.3
Lalb_Chr02g0144111 Lupinus albus HOM05D006753 ORTHO05D008521 1.1e-34 150.2 121 65.3
Ca_11278_v3 Cicer arietinum L. HOM05D006753 ORTHO05D008521 5.4e-34 147.9 126 62.7
Atru.chr11.42 Acer truncatum HOM05D006753 ORTHO05D008521 2.1e-33 146.0 129 64.3
MBI03_g11899_MAGBIO Magnolia biondii HOM05D006753 ORTHO05D008521 2.7e-33 145.6 126 63.5
Sc21g0003760 Simmondsia chinensis HOM05D006753 ORTHO05D008521 6.0e-33 144.4 132 64.4
Potri.008G003100 Populus trichocarpa HOM05D006753 ORTHO05D008521 2.3e-32 142.5 127 62.2
SGA_v2.0_scaffold119G32769 Striga asiatica HOM05D006753 ORTHO05D008521 3.0e-32 142.1 130 59.2
Oeu006328.1 Olea europaea HOM05D006753 ORTHO05D008521 5.1e-32 141.4 128 57.8
MSTRG.13663 Avicennia marina HOM05D006753 ORTHO05D008521 6.6e-32 141.0 130 56.9
EL10Ac9g23017 Beta vulgaris HOM05D006753 ORTHO05D008521 8.6e-32 140.6 114 64.0
CAN.G815.2 Capsicum annuum HOM05D006753 ORTHO05D008521 8.6e-32 140.6 128 55.5
Sabra08G0001000 Salix brachista HOM05D006753 ORTHO05D008521 8.6e-32 140.6 125 62.4
DCAR_023493 Daucus carota HOM05D006753 ORTHO05D008521 2.5e-31 139.0 120 65.0
Dinv25482 Davidia involucrata HOM05D006753 ORTHO05D008521 3.3e-31 138.7 120 63.3
Sopen03g009600 Solanum pennellii HOM05D006753 ORTHO05D008521 4.3e-31 138.3 125 57.6
ATR0124G001 Amborella trichopoda HOM05D006753 ORTHO05D008521 9.5e-31 137.1 128 61.7
Ciclev10017207m.g Citrus clementina HOM05D006753 ORTHO05D008521 1.2e-30 136.7 128 60.9
Nitab4.5_0000075g0200 Nicotiana tabacum HOM05D006753 ORTHO05D008521 2.1e-30 136.0 133 56.4
Os10g0491900 Oryza sativa ssp. japonica HOM05D006753 ORTHO05D008521 2.1e-30 136.0 114 63.2
ECA238G1815 Erigeron canadensis HOM05D006753 ORTHO05D008521 2.8e-30 135.6 125 61.6
Psat6g234480 Pisum sativum HOM05D006753 ORTHO05D008521 3.6e-30 135.2 119 61.3
Thhalv10002245m.g Eutrema salsugineum HOM05D006753 ORTHO05D008521 4.7e-30 134.8 125 60.8
Zm00001eb044950 Zea mays HOM05D006753 ORTHO05D008521 6.2e-30 134.4 114 61.4
AUR62032899 Chenopodium quinoa HOM05D006753 ORTHO05D008521 1.4e-29 133.3 117 59.0
Aqoxy3G04333 Aquilegia oxysepala HOM05D006753 ORTHO05D008521 2.3e-29 132.5 105 63.8
Migut.E00658 Erythranthe guttata HOM05D006753 ORTHO05D008521 5.2e-29 131.3 121 58.7
Migut.E00593 Erythranthe guttata HOM05D006753 ORTHO05D008521 6.8e-29 131.0 121 57.0
PGSC0003DMG400018762 Solanum tuberosum HOM05D006753 ORTHO05D008521 6.8e-29 131.0 125 54.4
Gohir.D12G135600 Gossypium hirsutum HOM05D006753 ORTHO05D008521 1.2e-28 130.2 128 59.4
CDE05G2438 Ceratophyllum demersum HOM05D006753 ORTHO05D008521 2.6e-28 129.0 129 58.1
AUR62017753 Chenopodium quinoa HOM05D006753 ORTHO05D008521 2.6e-28 129.0 116 59.5
Lsat_1_v5_gn_2_64221 Lactuca sativa HOM05D006753 ORTHO05D008521 4.4e-28 128.3 124 59.7
AT3G52350 Arabidopsis thaliana HOM05D006753 ORTHO05D008521 1.7e-27 126.3 123 61.0
Rhsim05G0152000 Rhododendron simsii HOM05D006753 ORTHO05D008521 1.7e-27 126.3 107 63.6
CDE05G0871 Ceratophyllum demersum HOM05D006753 ORTHO05D008521 2.2e-27 125.9 128 57.0
Gorai.008G146800 Gossypium raimondii HOM05D006753 ORTHO05D008521 2.9e-27 125.6 128 57.8
RcHm_v2.0_Chr5g0030611 Rosa chinensis HOM05D006753 ORTHO05D008521 3.7e-27 125.2 118 58.5
FAN11G3971 Fragaria x ananassa HOM05D006753 ORTHO05D008521 4.9e-27 124.8 116 60.3
Gohir.A12G132000 Gossypium hirsutum HOM05D006753 ORTHO05D008521 4.9e-27 124.8 127 57.5
Sp6g34360 Schrenkiella parvula HOM05D006753 ORTHO05D008521 6.4e-27 124.4 129 60.5
Carub.0005s1869 Capsella rubella HOM05D006753 ORTHO05D008521 8.3e-27 124.0 129 59.7
AUR62020818 Chenopodium quinoa HOM05D006753 ORTHO05D008521 8.3e-27 124.0 117 57.3
Nitab4.5_0008337g0010 Nicotiana tabacum HOM05D006753 ORTHO05D008521 8.3e-27 124.0 133 52.6
SEGI_09956 Sequoiadendron giganteum HOM05D006753 ORTHO05D008521 1.4e-26 123.2 123 52.0
FvH4_3g18161 Fragaria vesca HOM05D006753 ORTHO05D008521 2.4e-26 122.5 116 59.5
CARHR204450 Cardamine hirsuta HOM05D006753 ORTHO05D008521 4.1e-26 121.7 129 58.1
TPR.G4104 Trifolium pratense HOM05D006753 ORTHO05D008521 7.1e-26 120.9 119 57.1
Nitab4.5_0001307g0130 Nicotiana tabacum HOM05D006753 ORTHO05D008521 1.2e-25 120.2 133 51.1
BraA09t41301Z Brassica rapa HOM05D006753 ORTHO05D008521 1.7e-24 116.3 114 57.9
Eucgr.J00331 Eucalyptus grandis HOM05D006753 ORTHO05D008521 5.1e-24 114.8 178 43.3
Prupe.1G351400 Prunus persica HOM05D006753 ORTHO05D008521 6.6e-24 114.4 119 54.6
Peaxi162Scf00003g02334 Petunia axillaris HOM05D006753 ORTHO05D008521 1.5e-23 113.2 105 54.3
AL5G33000 Arabidopsis lyrata HOM05D006753 ORTHO05D008521 1.9e-23 112.8 123 56.9
arahy.Tifrunner.gnm1.ann1.IW7U68 Arachis hypogaea HOM05D006753 ORTHO05D008521 5.6e-23 111.3 73 74.0
arahy.Tifrunner.gnm1.ann1.RGG8YR Arachis hypogaea HOM05D006753 ORTHO05D008521 5.6e-23 111.3 73 74.0
BcaC07g41240 Brassica carinata HOM05D006753 ORTHO05D008521 5.6e-23 111.3 126 54.0
C08p42460 Brassica napus HOM05D006753 ORTHO05D008521 5.6e-23 111.3 126 54.0
BolC8t51807H Brassica oleracea HOM05D006753 ORTHO05D008521 5.6e-23 111.3 126 54.0
A09p59170 Brassica napus HOM05D006753 ORTHO05D008521 7.3e-23 110.9 124 54.0
Lj6g0020021 Lotus japonicus HOM05D006753 ORTHO05D008521 9.5e-23 110.5 116 54.3
C09p68400 Brassica napus HOM05D006753 ORTHO05D008521 1.2e-22 110.2 123 56.1
BolC9t59587H Brassica oleracea HOM05D006753 ORTHO05D008521 3.6e-22 108.6 128 53.9
PSO782G2482 Papaver somniferum HOM05D006753 ORTHO05D008521 8.1e-22 107.5 121 48.8
AL6G19240 Arabidopsis lyrata HOM05D006753 ORTHO05D008521 1.1e-21 107.1 109 58.7
A10p28190 Brassica napus HOM05D006753 ORTHO05D008521 1.1e-21 107.1 130 53.8
BraA10t44868Z Brassica rapa HOM05D006753 ORTHO05D008521 1.1e-21 107.1 130 53.8
PSO063G2822 Papaver somniferum HOM05D006753 ORTHO05D008521 1.8e-21 106.3 121 48.8
Pp3c15_7650 Physcomitrium patens HOM05D006753 ORTHO05D008521 1.8e-21 106.3 119 47.9
AT5G08535 Arabidopsis thaliana HOM05D006753 ORTHO05D008521 5.2e-21 104.8 111 55.0
BcaB08g34880 Brassica carinata HOM05D006753 ORTHO05D008521 6.8e-21 104.4 125 52.0
Cc11_g04160 Coffea canephora HOM05D006753 ORTHO05D008521 2.4e-18 95.9 62 74.2
Aa31LG3G18000 Aethionema arabicum HOM05D006753 ORTHO05D008521 7.1e-18 94.4 116 50.9
BcaB08g37248 Brassica carinata HOM05D006753 ORTHO05D008521 1.2e-17 93.6 107 55.1
SMO166G0033 Selaginella moellendorffii HOM05D006753 ORTHO05D008521 1.2e-17 93.6 120 46.7
HanXRQChr14g0446421 Helianthus annuus HOM05D006753 ORTHO05D008521 3.5e-17 92.0 81 61.7
Nitab4.5_0002355g0040 Nicotiana tabacum HOM05D006753 ORTHO05D008521 6.0e-17 91.3 131 45.0
SMO115G0110 Selaginella moellendorffii HOM05D000422 ORTHO05D002369 1.3e-16 90.1 118 45.8
Carub.0006s0749 Capsella rubella HOM05D006753 ORTHO05D008521 3.0e-16 89.0 128 48.4
Mapoly0001s0293 Marchantia polymorpha HOM05D006753 ORTHO05D008521 3.0e-16 89.0 112 44.6
Haze_17401 Corylus avellana HOM05D006753 ORTHO05D008521 5.1e-16 88.2 51 90.2
HPP92_003487 Vanilla planifolia HOM05D006753 ORTHO05D008521 1.1e-15 87.0 119 44.5
HPP92_026885 Vanilla planifolia HOM05D006753 ORTHO05D008521 1.1e-15 87.0 119 44.5
SHI21226 Sapria himalayana HOM05D000843 ORTHO05D000698 1.5e-15 86.7 66 69.7
Thhalv10015604m.g Eutrema salsugineum HOM05D006753 ORTHO05D008521 4.3e-15 85.1 86 59.3
COL.COLO4_21663 Corchorus olitorius HOM05D006753 ORTHO05D008521 2.0e-12 76.3 86 55.8
vmacro19681 Vaccinium macrocarpon HOM05D006753 ORTHO05D008521 1.7e-08 63.2 140 35.0
AagrBONN_evm.TU.Sc2ySwM_228.1188 Anthoceros agrestis HOM05D006753 ORTHO05D008521 3.0e-08 62.4 135 32.6
THA.LOC104821749 Tarenaya hassleriana HOM05D005826 ORTHO05D004357 6.6e-08 61.2 107 38.3
SGA_v2.0_scaffold22G09707 Striga asiatica HOM05D005826 ORTHO05D004357 1.5e-07 60.1 107 36.4
Actinidia17738 Actinidia chinensis HOM05D005826 ORTHO05D004357 1.9e-07 59.7 107 36.4
Rhsim11G0105000 Rhododendron simsii HOM05D005826 ORTHO05D004357 2.5e-07 59.3 107 36.4
vmacro01667 Vaccinium macrocarpon HOM05D005826 ORTHO05D004357 2.5e-07 59.3 107 36.4
CBR_g16096 Chara braunii HOM05D000019 ORTHO05D000002 3.3e-07 58.9 96 37.5
Dinv30950 Davidia involucrata HOM05D005826 ORTHO05D004357 3.3e-07 58.9 107 36.4
EL10Ac4g09561 Beta vulgaris HOM05D005826 ORTHO05D004357 4.3e-07 58.5 105 35.2
Sc09g0002410 Simmondsia chinensis HOM05D005826 ORTHO05D004357 4.3e-07 58.5 107 36.4
AT5G26610 Arabidopsis thaliana HOM05D005826 ORTHO05D004357 7.3e-07 57.8 107 34.6
CSS0023466 Camellia sinensis var. sinensis HOM05D006753 ORTHO05D008521 7.3e-07 57.8 27 96.3
Carub.0006s2438 Capsella rubella HOM05D005826 ORTHO05D004357 7.3e-07 57.8 107 34.6
Thhalv10004695m.g Eutrema salsugineum HOM05D005826 ORTHO05D004357 7.3e-07 57.8 107 34.6
Pp3c20_6860 Physcomitrium patens HOM05D005826 ORTHO05D004357 7.3e-07 57.8 109 35.8
Migut.N00974 Erythranthe guttata HOM05D005826 ORTHO05D004357 9.6e-07 57.4 107 34.6
Nn3g21953 Nelumbo nucifera HOM05D005826 ORTHO05D004357 9.6e-07 57.4 105 36.2
Nn4g25335 Nelumbo nucifera HOM05D005826 ORTHO05D004357 9.6e-07 57.4 105 35.2
Ah.06g190730 Amaranthus hybridus HOM05D005826 ORTHO05D004357 1.3e-06 57.0 105 34.3
TWI12G0016 Tripterygium wilfordii HOM05D005826 ORTHO05D004357 1.3e-06 57.0 105 35.2
DCAR_006590 Daucus carota HOM05D005826 ORTHO05D004357 1.6e-06 56.6 107 33.6
MD12G1199800 Malus domestica HOM05D005826 ORTHO05D004357 1.6e-06 56.6 107 36.4
Manes.09G181300 Manihot esculenta HOM05D005826 ORTHO05D004357 1.6e-06 56.6 108 34.3
Solyc01g101250.3 Solanum lycopersicum HOM05D005826 ORTHO05D004357 1.6e-06 56.6 107 35.5
Sopen01g044700 Solanum pennellii HOM05D005826 ORTHO05D004357 1.6e-06 56.6 107 35.5
Aqoxy2G02470 Aquilegia oxysepala HOM05D005826 ORTHO05D004357 2.1e-06 56.2 105 36.2
Cre02.g085200 Chlamydomonas reinhardtii HOM05D006753 ORTHO05D008521 2.1e-06 56.2 54 46.3
Hma1.2p1_0052F.1_g030390 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 2.1e-06 56.2 107 34.6
Hma1.2p1_0052F.1_g030400 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 2.1e-06 56.2 107 34.6
Atru.chr12.1539 Acer truncatum HOM05D005826 ORTHO05D004357 2.8e-06 55.8 105 34.3
AL6G38590 Arabidopsis lyrata HOM05D005826 ORTHO05D004357 2.8e-06 55.8 97 41.2
CSS0046614 Camellia sinensis var. sinensis HOM05D005384 ORTHO05D006477 2.8e-06 55.8 52 48.1
HPP92_006322 Vanilla planifolia HOM05D005826 ORTHO05D004357 2.8e-06 55.8 105 35.2
HPP92_027884 Vanilla planifolia HOM05D005826 ORTHO05D004357 2.8e-06 55.8 105 35.2
Cpa.g.sc48.51 Carica papaya HOM05D005826 ORTHO05D004357 3.6e-06 55.5 107 34.6
Ciclev10012662m.g Citrus clementina HOM05D005826 ORTHO05D004357 3.6e-06 55.5 105 35.2
CsaV3_1G038040 Cucumis sativus L. HOM05D005826 ORTHO05D004357 3.6e-06 55.5 105 33.3
Hund07271 Selenicereus undatus HOM05D005826 ORTHO05D004357 3.6e-06 55.5 107 33.6
AT3G57910 Arabidopsis thaliana HOM05D006823 ORTHO05D008608 4.8e-06 55.1 85 35.3
Cfa006771 Carpinus fangiana HOM05D005826 ORTHO05D004357 4.8e-06 55.1 113 37.2
Haze_03986 Corylus avellana HOM05D005826 ORTHO05D004357 4.8e-06 55.1 113 37.2
Thhalv10006171m.g Eutrema salsugineum HOM05D006823 ORTHO05D008608 4.8e-06 55.1 102 35.3
Lj4g0003244 Lotus japonicus HOM05D005384 ORTHO05D006477 4.8e-06 55.1 51 47.1
Sed0027683 Sechium edule HOM05D005826 ORTHO05D004357 4.8e-06 55.1 110 34.5
Zm00001eb089260 Zea mays HOM05D005826 ORTHO05D004357 4.8e-06 55.1 123 34.1
A07p23720 Brassica napus HOM05D002947 ORTHO05D003447 6.2e-06 54.7 85 32.9
BraA07t30025Z Brassica rapa HOM05D006823 ORTHO05D008608 6.2e-06 54.7 85 32.9
CANSAT54G1651 Cannabis sativa HOM05D005826 ORTHO05D004357 6.2e-06 54.7 105 33.3
AUR62000478 Chenopodium quinoa HOM05D005826 ORTHO05D004357 6.2e-06 54.7 105 33.3
AUR62006820 Chenopodium quinoa HOM05D005826 ORTHO05D004357 6.2e-06 54.7 105 33.3
Glyma.19G225400 Glycine max HOM05D005826 ORTHO05D004357 6.2e-06 54.7 105 35.2
TPR.G28963 Trifolium pratense HOM05D005384 ORTHO05D006477 6.2e-06 54.7 55 45.5
C06p24950 Brassica napus HOM05D002947 ORTHO05D003447 8.1e-06 54.3 102 31.4
CiPaw.07G036400 Carya illinoinensis HOM05D005826 ORTHO05D004357 8.1e-06 54.3 105 35.2
Dinv07851 Davidia involucrata HOM05D005384 ORTHO05D006477 8.1e-06 54.3 55 45.5
Lj1g0011738 Lotus japonicus HOM05D005826 ORTHO05D004357 8.1e-06 54.3 108 35.2
Psat3g015120 Pisum sativum HOM05D005826 ORTHO05D004357 8.1e-06 54.3 107 33.6
PGR042G2720 Punica granatum HOM05D005384 ORTHO05D006477 8.1e-06 54.3 73 37.0


User provided reference genes

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