Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018642 Carpinus fangiana HOM05D006903 ORTHO05D008655 9.8e-231 803.1 414 100.0
Haze_17427 Corylus avellana HOM05D006903 ORTHO05D008655 1.6e-220 769.2 449 89.1
Haze_17428 Corylus avellana HOM05D006903 ORTHO05D008655 1.6e-220 769.2 449 89.1
QL01p001027 Quercus lobata HOM05D006903 ORTHO05D008655 2.1e-180 636.0 448 74.3
CiPaw.16G002500 Carya illinoinensis HOM05D006903 ORTHO05D008655 2.5e-173 612.5 432 74.1
Dinv16514 Davidia involucrata HOM05D006903 ORTHO05D008655 4.7e-156 555.1 414 67.4
CANSAT64G1629 Cannabis sativa HOM05D006903 ORTHO05D008655 5.7e-154 548.1 450 64.0
Prupe.1G304300 Prunus persica HOM05D006903 ORTHO05D008655 1.4e-152 543.5 408 68.9
RcHm_v2.0_Chr4g0435961 Rosa chinensis HOM05D006903 ORTHO05D008655 1.4e-152 543.5 439 65.1
MD13G1047700 Malus domestica HOM05D006903 ORTHO05D008655 1.8e-152 543.1 437 65.9
CSS0045037 Camellia sinensis var. sinensis HOM05D006903 ORTHO05D008655 1.0e-150 537.3 402 68.9
FAN12G3275 Fragaria x ananassa HOM05D006903 ORTHO05D008655 1.7e-150 536.6 441 64.6
FvH4_4g28200 Fragaria vesca HOM05D006903 ORTHO05D008655 6.5e-150 534.6 441 64.6
FAN22G1870 Fragaria x ananassa HOM05D006903 ORTHO05D008655 1.1e-149 533.9 407 68.6
GSVIVG01011964001 Vitis vinifera HOM05D006903 ORTHO05D008655 4.2e-149 531.9 446 63.2
Actinidia14845 Actinidia chinensis HOM05D006903 ORTHO05D008655 2.1e-148 529.6 402 67.4
Duzib248G0677 Durio zibethinus HOM05D006903 ORTHO05D008655 6.8e-147 524.6 455 61.3
Rhsim09G0113100 Rhododendron simsii HOM05D006903 ORTHO05D008655 1.7e-145 520.0 401 67.6
Peaxi162Scf00367g00739 Petunia axillaris HOM05D006903 ORTHO05D008655 6.3e-145 518.1 444 61.9
Cpa.g.sc1.226 Carica papaya HOM05D006903 ORTHO05D008655 1.4e-144 516.9 430 63.5
Ca_26576_v3 Cicer arietinum L. HOM05D006903 ORTHO05D008655 7.0e-144 514.6 449 63.0
Sabra10G0099600 Salix brachista HOM05D006903 ORTHO05D008655 7.7e-143 511.1 451 61.2
FAN17G3035 Fragaria x ananassa HOM05D006903 ORTHO05D008655 2.5e-141 506.1 406 66.3
Medtr5g053280 Medicago truncatula HOM05D006903 ORTHO05D008655 5.5e-141 505.0 403 66.3
Glyma.02G101000 Glycine max HOM05D006903 ORTHO05D008655 2.1e-140 503.1 400 66.2
CAN.G184.79 Capsicum annuum HOM05D006903 ORTHO05D008655 4.7e-140 501.9 405 63.2
Potri.010G130700 Populus trichocarpa HOM05D006903 ORTHO05D008655 1.0e-139 500.7 456 59.4
Phvul.003G026200 Phaseolus vulgaris HOM05D006903 ORTHO05D008655 1.8e-139 500.0 447 60.4
Sc04g0006770 Simmondsia chinensis HOM05D006903 ORTHO05D008655 4.0e-139 498.8 435 60.9
Sopen05g005730 Solanum pennellii HOM05D006903 ORTHO05D008655 4.0e-139 498.8 431 60.6
Nitab4.5_0005803g0010 Nicotiana tabacum HOM05D006903 ORTHO05D008655 5.2e-139 498.4 436 60.1
VMungo1215G2648 Vigna mungo HOM05D006903 ORTHO05D008655 5.2e-139 498.4 447 60.6
PGR119G0052 Punica granatum HOM05D006903 ORTHO05D008655 1.2e-138 497.3 402 64.7
Lj2g0014822 Lotus japonicus HOM05D006903 ORTHO05D008655 3.4e-138 495.7 404 63.9
Migut.E00291 Erythranthe guttata HOM05D006903 ORTHO05D008655 4.4e-138 495.4 444 58.8
DCAR_030091 Daucus carota HOM05D006903 ORTHO05D008655 7.5e-138 494.6 401 63.8
FAN07G2589 Fragaria x ananassa HOM05D006903 ORTHO05D008655 2.8e-137 492.7 441 61.5
Lj3C1020T9 Lonicera japonica HOM05D006903 ORTHO05D008655 2.8e-137 492.7 404 63.9
Hund05771 Selenicereus undatus HOM05D006903 ORTHO05D008655 3.7e-137 492.3 414 61.6
Eucgr.G02357 Eucalyptus grandis HOM05D006903 ORTHO05D008655 1.2e-135 487.3 403 63.3
arahy.Tifrunner.gnm1.ann1.9PC4TR Arachis hypogaea HOM05D006903 ORTHO05D008655 2.7e-135 486.1 452 58.8
Oeu044621.1 Olea europaea HOM05D006903 ORTHO05D008655 4.5e-135 485.3 437 57.9
arahy.Tifrunner.gnm1.ann1.RDH5GK Arachis hypogaea HOM05D006903 ORTHO05D008655 5.9e-135 485.0 452 58.8
Gorai.005G137600 Gossypium raimondii HOM05D006903 ORTHO05D008655 1.1e-133 480.7 443 57.8
Sed0022387 Sechium edule HOM05D006903 ORTHO05D008655 7.3e-133 478.0 452 58.2
CsaV3_5G033920 Cucumis sativus L. HOM05D006903 ORTHO05D008655 2.1e-132 476.5 449 57.9
TPR.G22411 Trifolium pratense HOM05D006903 ORTHO05D008655 8.0e-132 474.6 380 66.1
Lsat_1_v5_gn_3_58300 Lactuca sativa HOM05D006903 ORTHO05D008655 5.7e-130 468.4 433 57.7
Lalb_Chr04g0254991 Lupinus albus HOM05D006903 ORTHO05D008655 9.8e-130 467.6 448 58.0
Cc11_g10700 Coffea canephora HOM05D006903 ORTHO05D008655 3.7e-129 465.7 435 56.6
Nitab4.5_0004705g0010 Nicotiana tabacum HOM05D006903 ORTHO05D008655 6.4e-129 464.9 448 55.8
MELO3C012210.2 Cucumis melo HOM05D006903 ORTHO05D008655 8.3e-129 464.5 462 56.5
HanXRQChr15g0476011 Helianthus annuus HOM05D006903 ORTHO05D008655 1.1e-128 464.2 401 59.9
Nn3g17696 Nelumbo nucifera HOM05D006903 ORTHO05D008655 1.1e-128 464.2 410 59.5
AUR62002930 Chenopodium quinoa HOM05D006903 ORTHO05D008655 1.2e-127 460.7 431 57.1
SalBow8G1412 Salvia bowleyana HOM05D006903 ORTHO05D008655 1.6e-127 460.3 401 60.6
Ciclev10033640m.g Citrus clementina HOM05D006903 ORTHO05D008655 6.6e-126 454.9 376 62.2
ClCG05G023070 Citrullus lanatus HOM05D006903 ORTHO05D008655 1.5e-125 453.8 445 56.2
EL10Ac6g14516 Beta vulgaris HOM05D006903 ORTHO05D008655 1.9e-125 453.4 439 55.8
COL.COLO4_07859 Corchorus olitorius HOM05D006903 ORTHO05D008655 4.3e-125 452.2 450 55.1
TWI31G1007 Tripterygium wilfordii HOM05D006903 ORTHO05D008655 5.6e-125 451.8 420 60.2
AL1G39690 Arabidopsis lyrata HOM05D006903 ORTHO05D008655 1.6e-124 450.3 443 55.3
AT1G26090 Arabidopsis thaliana HOM05D006903 ORTHO05D008655 1.6e-124 450.3 443 55.3
Aa31LG7G8910 Aethionema arabicum HOM05D006903 ORTHO05D008655 5.2e-123 445.3 447 55.0
Aqoxy3G00382 Aquilegia oxysepala HOM05D006903 ORTHO05D008655 5.2e-123 445.3 407 58.5
CARHR025840 Cardamine hirsuta HOM05D006903 ORTHO05D008655 2.6e-122 443.0 436 54.8
PSO478G5279 Papaver somniferum HOM05D006903 ORTHO05D008655 4.4e-122 442.2 406 55.2
ECA246G0069 Erigeron canadensis HOM05D006903 ORTHO05D008655 7.5e-122 441.4 376 61.4
Thhalv10007585m.g Eutrema salsugineum HOM05D006903 ORTHO05D008655 1.3e-121 440.7 444 55.2
PGSC0003DMG400000822 Solanum tuberosum HOM05D006903 ORTHO05D008655 6.4e-121 438.3 375 60.0
BraA08t34657Z Brassica rapa HOM05D006903 ORTHO05D008655 5.4e-120 435.3 429 55.7
A08p27120 Brassica napus HOM05D006903 ORTHO05D008655 1.6e-119 433.7 405 57.3
Sp1g22600 Schrenkiella parvula HOM05D006903 ORTHO05D008655 1.6e-119 433.7 437 54.0
Carub.0001s2488 Capsella rubella HOM05D006903 ORTHO05D008655 2.7e-119 433.0 437 54.2
MBI10_g08549_MAGBIO Magnolia biondii HOM05D006903 ORTHO05D008655 5.0e-118 428.7 404 56.7
BolC3t19572H Brassica oleracea HOM05D006903 ORTHO05D008655 5.6e-117 425.2 401 57.4
C03p72740 Brassica napus HOM05D006903 ORTHO05D008655 1.6e-116 423.7 401 56.9
Manes.06G073100 Manihot esculenta HOM05D006903 ORTHO05D008655 8.1e-116 421.4 331 66.5
Atru.chr11.1372 Acer truncatum HOM05D006903 ORTHO05D008655 4.0e-115 419.1 331 65.6
vmacro10523 Vaccinium macrocarpon HOM05D006903 ORTHO05D008655 4.0e-115 419.1 344 63.7
AUR62007740 Chenopodium quinoa HOM05D006903 ORTHO05D008655 4.4e-114 415.6 386 57.0
BcaB03g12083 Brassica carinata HOM05D006903 ORTHO05D008655 1.6e-108 397.1 407 54.1
Ah.03g137980 Amaranthus hybridus HOM05D006903 ORTHO05D008655 4.9e-105 385.6 335 57.9
ATR0053G028 Amborella trichopoda HOM05D006903 ORTHO05D008655 5.4e-104 382.1 407 52.3
unitig_62.g23710 Utricularia gibba HOM05D006903 ORTHO05D008655 5.4e-104 382.1 433 50.3
Psat0s629g0200 Pisum sativum HOM05D006903 ORTHO05D008655 2.1e-103 380.2 329 62.0
PSO017G3486 Papaver somniferum HOM05D006903 ORTHO05D008655 3.4e-98 362.8 356 52.0
SGA_v2.0_scaffold14G06815 Striga asiatica HOM05D006903 ORTHO05D008655 2.9e-97 359.8 332 56.9
Zm00001eb252440 Zea mays HOM05D006903 ORTHO05D008655 4.9e-97 359.0 399 49.6
Thecc.02G362300 Theobroma cacao HOM05D006903 ORTHO05D008655 2.3e-94 350.1 295 62.0
Hma1.2p1_0406F.1_g145980 Hydrangea macrophylla HOM05D006903 ORTHO05D008655 4.5e-90 335.9 295 60.0
TAR629G3475 Trochodendron aralioides HOM05D006903 ORTHO05D008655 3.8e-89 332.8 294 58.2
AagrBONN_evm.TU.Sc2ySwM_117.1113 Anthoceros agrestis HOM05D006903 ORTHO05D008655 5.8e-82 308.9 404 42.3
Pp3c6_9390 Physcomitrium patens HOM05D006903 ORTHO05D008655 7.1e-80 302.0 431 41.5
Solyc05g009920.4 Solanum lycopersicum HOM05D006903 ORTHO05D008655 8.7e-78 295.0 257 60.3
Gohir.A03G097100 Gossypium hirsutum HOM05D006903 ORTHO05D008655 1.1e-77 294.7 303 52.8
Mapoly0088s0003 Marchantia polymorpha HOM05D006903 ORTHO05D008655 1.5e-77 294.3 402 41.8
Gohir.D02G116200 Gossypium hirsutum HOM05D006903 ORTHO05D008655 3.3e-77 293.1 302 52.3
SEGI_13133 Sequoiadendron giganteum HOM05D006903 ORTHO05D008655 3.4e-74 283.1 361 44.3
SMO367G1048 Selaginella moellendorffii HOM05D006903 ORTHO05D008655 2.6e-66 256.9 409 38.6
HanXRQChr00c0584g0576181 Helianthus annuus HOM05D006903 ORTHO05D008655 2.5e-64 250.4 224 58.9
SEGI_18137 Sequoiadendron giganteum HOM05D006903 ORTHO05D008655 1.5e-61 241.1 331 41.7
GSVIVG01021676001 Vitis vinifera HOM05D006903 ORTHO05D008655 4.4e-53 213.0 132 77.3
Potri.008G115401 Populus trichocarpa HOM05D006903 ORTHO05D008655 3.4e-50 203.4 154 64.3
Glyma.01G089202 Glycine max HOM05D006903 ORTHO05D008655 8.2e-44 182.2 146 59.6
Os02g0711200 Oryza sativa ssp. japonica HOM05D006903 ORTHO05D008655 2.6e-42 177.2 137 63.5
HPP92_003073 Vanilla planifolia HOM05D006903 ORTHO05D008655 7.7e-42 175.6 166 56.6
GSVIVG01031030001 Vitis vinifera HOM05D006903 ORTHO05D008655 7.0e-35 152.5 97 76.3
HPP92_003072 Vanilla planifolia HOM05D006903 ORTHO05D008655 7.7e-34 149.1 245 38.0
CSS0042654 Camellia sinensis var. sinensis HOM05D006903 ORTHO05D008655 1.9e-24 117.9 136 52.9
TAR629G0855 Trochodendron aralioides HOM05D006903 ORTHO05D008655 7.2e-24 115.9 118 56.8
GSVIVG01021677001 Vitis vinifera HOM05D006903 ORTHO05D008655 3.5e-18 97.1 91 52.7
TAR626G1973 Trochodendron aralioides HOM05D006903 ORTHO05D008655 2.5e-16 90.9 87 52.9
CSS0002023 Camellia sinensis var. sinensis HOM05D006903 ORTHO05D008655 3.7e-12 77.0 49 79.6
CSS0033674 Camellia sinensis var. sinensis HOM05D050661 ORTHO05D112259 6.2e-07 59.7 47 61.7
HanXRQChr00c0584g0576191 Helianthus annuus HOM05D006903 ORTHO05D008655 8.0e-07 59.3 108 34.3
GSVIVG01031031001 Vitis vinifera HOM05D006903 ORTHO05D008655 8.0e-07 59.3 46 58.7


User provided reference genes

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