Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018610 Carpinus fangiana HOM05D006290 ORTHO05D007734 2.5e-57 225.3 121 100.0
Haze_17464 Corylus avellana HOM05D006290 ORTHO05D007734 2.1e-56 222.2 121 98.3
QL01p043858 Quercus lobata HOM05D006290 ORTHO05D007734 1.0e-42 176.8 121 77.7
CiPaw.15G083600 Carya illinoinensis HOM05D006290 ORTHO05D007734 1.8e-36 156.0 118 70.3
Dinv21105 Davidia involucrata HOM05D001580 ORTHO05D001517 5.4e-36 154.5 116 70.7
Sabra10G0096300 Salix brachista HOM05D006290 ORTHO05D007734 1.6e-35 152.9 121 71.1
Atru.chr11.1291 Acer truncatum HOM05D006290 ORTHO05D007734 1.7e-34 149.4 113 70.8
Potri.010G126800 Populus trichocarpa HOM05D006290 ORTHO05D007734 6.6e-34 147.5 117 69.2
Thecc.02G357300 Theobroma cacao HOM05D006290 ORTHO05D007734 8.6e-34 147.1 114 67.5
Potri.008G119300 Populus trichocarpa HOM05D006290 ORTHO05D007734 7.3e-33 144.1 111 68.5
Manes.14G100600 Manihot esculenta HOM05D006290 ORTHO05D007734 1.0e-31 140.2 118 63.6
Gohir.A12G168000 Gossypium hirsutum HOM05D006290 ORTHO05D007734 3.7e-29 131.7 100 67.0
COL.COLO4_07905 Corchorus olitorius HOM05D001580 ORTHO05D001517 6.4e-29 131.0 128 59.4
Duzib251G0521 Durio zibethinus HOM05D006290 ORTHO05D007734 6.4e-29 131.0 121 62.0
Gohir.D12G171600 Gossypium hirsutum HOM05D006290 ORTHO05D007734 6.4e-29 131.0 100 67.0
Glyma.10G275300 Glycine max HOM05D006290 ORTHO05D007734 9.2e-28 127.1 119 58.8
Duzib268G1644 Durio zibethinus HOM05D006290 ORTHO05D007734 1.2e-27 126.7 119 60.5
Gorai.008G184100 Gossypium raimondii HOM05D006290 ORTHO05D007734 1.2e-27 126.7 101 66.3
Phvul.003G034800 Phaseolus vulgaris HOM05D006290 ORTHO05D007734 1.2e-27 126.7 107 62.6
Glyma.20G114400 Glycine max HOM05D006290 ORTHO05D007734 3.5e-27 125.2 119 58.0
Gohir.D13G071500 Gossypium hirsutum HOM05D006290 ORTHO05D007734 7.8e-27 124.0 116 59.5
Gorai.013G081900 Gossypium raimondii HOM05D006290 ORTHO05D007734 7.8e-27 124.0 116 59.5
Lalb_Chr17g0342051 Lupinus albus HOM05D006290 ORTHO05D007734 1.0e-26 123.6 119 56.3
Hma1.2p1_3293F.1_g334960 Hydrangea macrophylla HOM05D006290 ORTHO05D007734 2.3e-26 122.5 118 58.5
Glyma.01G082500 Glycine max HOM05D006290 ORTHO05D007734 3.0e-26 122.1 125 60.0
Gohir.A13G054000 Gossypium hirsutum HOM05D006290 ORTHO05D007734 6.6e-26 120.9 106 62.3
GSVIVG01011914001 Vitis vinifera HOM05D006290 ORTHO05D007734 8.6e-26 120.6 119 57.1
TWI79G1749 Tripterygium wilfordii HOM05D006290 ORTHO05D007734 2.5e-25 119.0 118 56.8
CANSAT64G2445 Cannabis sativa HOM05D006290 ORTHO05D007734 3.3e-25 118.6 118 57.6
TWI75G0318 Tripterygium wilfordii HOM05D006290 ORTHO05D007734 4.3e-25 118.2 120 56.7
Phvul.007G026200 Phaseolus vulgaris HOM05D006290 ORTHO05D007734 7.3e-25 117.5 116 56.9
Eucgr.G02333 Eucalyptus grandis HOM05D006290 ORTHO05D007734 9.5e-25 117.1 106 62.3
arahy.Tifrunner.gnm1.ann1.89WS3K Arachis hypogaea HOM05D006290 ORTHO05D007734 1.2e-24 116.7 122 58.2
arahy.Tifrunner.gnm1.ann1.N6V5UD Arachis hypogaea HOM05D006290 ORTHO05D007734 2.8e-24 115.5 122 57.4
Lalb_Chr10g0099941 Lupinus albus HOM05D006290 ORTHO05D007734 2.8e-24 115.5 116 56.0
TPR.G26319 Trifolium pratense HOM05D006290 ORTHO05D007734 3.6e-24 115.2 116 56.9
MD13G1043600 Malus domestica HOM05D006290 ORTHO05D007734 6.2e-24 114.4 103 61.2
Medtr1g111150 Medicago truncatula HOM05D006290 ORTHO05D007734 1.0e-23 113.6 104 63.5
Lalb_Chr21g0309011 Lupinus albus HOM05D006290 ORTHO05D007734 4.0e-23 111.7 119 52.9
Glyma.08G263700 Glycine max HOM05D006290 ORTHO05D007734 6.8e-23 110.9 110 60.0
Lj2g0005219 Lotus japonicus HOM05D006290 ORTHO05D007734 6.8e-23 110.9 121 54.5
Medtr5g055200 Medicago truncatula HOM05D006290 ORTHO05D007734 6.8e-23 110.9 119 52.9
Lj5g0001389 Lotus japonicus HOM05D006290 ORTHO05D007734 2.0e-22 109.4 122 55.7
vmacro10549 Vaccinium macrocarpon HOM05D006290 ORTHO05D007734 2.6e-22 109.0 98 66.3
TAR371G1266 Trochodendron aralioides HOM05D006108 ORTHO05D007605 3.4e-22 108.6 117 55.6
Ciclev10033212m.g Citrus clementina HOM05D006290 ORTHO05D007734 2.2e-21 105.9 85 65.9
Manes.06G069950 Manihot esculenta HOM05D006290 ORTHO05D007734 2.9e-21 105.5 79 69.6
EL10Ac6g14437 Beta vulgaris HOM05D006290 ORTHO05D007734 6.4e-21 104.4 104 53.8
Psat6g229000 Pisum sativum HOM05D006290 ORTHO05D007734 8.3e-21 104.0 106 59.4
THA.LOC104821947 Tarenaya hassleriana HOM05D006290 ORTHO05D007734 1.1e-20 103.6 118 52.5
Nitab4.5_0001914g0020 Nicotiana tabacum HOM05D006290 ORTHO05D007734 3.2e-20 102.1 120 48.3
Dinv04481 Davidia involucrata HOM05D001580 ORTHO05D001517 7.0e-20 100.9 81 71.6
PGR119G1521 Punica granatum HOM05D006290 ORTHO05D007734 7.0e-20 100.9 94 55.3
Oeu033294.1 Olea europaea HOM05D006290 ORTHO05D007734 9.2e-20 100.5 120 50.0
FvH4_4g27620 Fragaria vesca HOM05D006290 ORTHO05D007734 1.6e-19 99.8 105 52.4
TPR.G38332 Trifolium pratense HOM05D006290 ORTHO05D007734 1.6e-19 99.8 103 55.3
Ca_11183_v3 Cicer arietinum L. HOM05D006290 ORTHO05D007734 3.5e-19 98.6 103 60.2
Peaxi162Scf00004g01813 Petunia axillaris HOM05D006290 ORTHO05D007734 6.0e-19 97.8 119 47.1
Sc14g0007550 Simmondsia chinensis HOM05D006290 ORTHO05D007734 6.0e-19 97.8 93 51.6
Actinidia16641 Actinidia chinensis HOM05D006290 ORTHO05D007734 1.7e-18 96.3 89 60.7
AT1G68585 Arabidopsis thaliana HOM05D006290 ORTHO05D007734 1.7e-18 96.3 103 54.4
Duzib248G0641 Durio zibethinus HOM05D006108 ORTHO05D007605 1.7e-18 96.3 74 70.3
AL2G27490 Arabidopsis lyrata HOM05D006290 ORTHO05D007734 3.9e-18 95.1 103 53.4
BcaC08g45955 Brassica carinata HOM05D006290 ORTHO05D007734 6.6e-18 94.4 105 52.4
BcaB03g15431 Brassica carinata HOM05D006290 ORTHO05D007734 1.1e-17 93.6 104 52.9
BcaC03g14971 Brassica carinata HOM05D006290 ORTHO05D007734 1.9e-17 92.8 119 47.9
Carub.0002s1512 Capsella rubella HOM05D006290 ORTHO05D007734 1.9e-17 92.8 104 52.9
DCAR_007237 Daucus carota HOM05D006290 ORTHO05D007734 1.9e-17 92.8 116 49.1
DCAR_023668 Daucus carota HOM05D000325 ORTHO05D002981 2.5e-17 92.4 80 62.5
ClCG05G022830 Citrullus lanatus HOM05D006290 ORTHO05D007734 3.3e-17 92.0 82 59.8
Thhalv10019326m.g Eutrema salsugineum HOM05D006290 ORTHO05D007734 3.3e-17 92.0 102 52.9
GSVIVG01008271001 Vitis vinifera HOM05D006108 ORTHO05D007605 3.3e-17 92.0 119 45.4
A07p31920 Brassica napus HOM05D006290 ORTHO05D007734 4.3e-17 91.7 106 52.8
C06p37490 Brassica napus HOM05D006290 ORTHO05D007734 4.3e-17 91.7 105 52.4
BolC6t38851H Brassica oleracea HOM05D006290 ORTHO05D007734 4.3e-17 91.7 105 52.4
BraA07t30820Z Brassica rapa HOM05D006290 ORTHO05D007734 4.3e-17 91.7 105 52.4
Aa31sc179G60 Aethionema arabicum HOM05D006290 ORTHO05D007734 7.3e-17 90.9 103 52.4
MSTRG.13517 Avicennia marina HOM05D006290 ORTHO05D007734 7.3e-17 90.9 93 49.5
CsaV3_5G034200 Cucumis sativus L. HOM05D006290 ORTHO05D007734 1.6e-16 89.7 109 50.5
BolC2t08586H Brassica oleracea HOM05D006290 ORTHO05D007734 2.8e-16 89.0 120 47.5
Nn4g23807 Nelumbo nucifera HOM05D006290 ORTHO05D007734 3.6e-16 88.6 86 61.6
Hund05756 Selenicereus undatus HOM05D006290 ORTHO05D007734 3.6e-16 88.6 96 52.1
Aqoxy3G00325 Aquilegia oxysepala HOM05D006290 ORTHO05D007734 6.2e-16 87.8 101 50.5
CARHR061380 Cardamine hirsuta HOM05D006290 ORTHO05D007734 8.1e-16 87.4 64 68.8
Sp5g23690 Schrenkiella parvula HOM05D006290 ORTHO05D007734 1.1e-15 87.0 104 51.9
Sed0010442 Sechium edule HOM05D006290 ORTHO05D007734 1.4e-15 86.7 108 47.2
BcaB05g24400 Brassica carinata HOM05D006290 ORTHO05D007734 1.8e-15 86.3 77 59.7
C02p25020 Brassica napus HOM05D006290 ORTHO05D007734 1.8e-15 86.3 105 50.5
Rhsim09G0109500 Rhododendron simsii HOM05D006290 ORTHO05D007734 1.8e-15 86.3 76 63.2
FAN07G1587 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.3e-15 85.9 136 41.2
FAN12G1280 Fragaria x ananassa HOM05D006290 ORTHO05D007734 2.3e-15 85.9 130 42.3
FAN22G0059 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.3e-15 85.9 138 40.6
SGA_v2.0_scaffold124G33547 Striga asiatica HOM05D006290 ORTHO05D007734 3.1e-15 85.5 119 47.1
MSTRG.826 Avicennia marina HOM05D006290 ORTHO05D007734 4.0e-15 85.1 94 47.9
A02p15210 Brassica napus HOM05D006290 ORTHO05D007734 4.0e-15 85.1 105 50.5
Lsat_1_v5_gn_4_18480 Lactuca sativa HOM05D006290 ORTHO05D007734 4.0e-15 85.1 125 41.6
BraA02t06584Z Brassica rapa HOM05D006290 ORTHO05D007734 5.2e-15 84.7 105 49.5
MBI12_g30235_MAGBIO Magnolia biondii HOM05D006290 ORTHO05D007734 5.2e-15 84.7 100 51.0
HanXRQChr17g0567961 Helianthus annuus HOM05D006290 ORTHO05D007734 6.8e-15 84.3 106 45.3
ECA234G1725 Erigeron canadensis HOM05D006290 ORTHO05D007734 2.0e-14 82.8 123 39.8
HanXRQChr16g0529651 Helianthus annuus HOM05D006290 ORTHO05D007734 4.4e-14 81.6 107 40.2
Nitab4.5_0003285g0030 Nicotiana tabacum HOM05D006290 ORTHO05D007734 5.8e-14 81.3 126 38.9
CiPaw.16G064000 Carya illinoinensis HOM05D006290 ORTHO05D007734 1.3e-13 80.1 62 74.2
Oeu020586.1 Olea europaea HOM05D006290 ORTHO05D007734 4.9e-13 78.2 104 50.0
AUR62002889 Chenopodium quinoa HOM05D006290 ORTHO05D007734 1.1e-12 77.0 69 58.0
Migut.L01076 Erythranthe guttata HOM05D006290 ORTHO05D007734 1.4e-12 76.6 92 50.0
VMungo0720G2407 Vigna mungo HOM05D006290 ORTHO05D007734 3.2e-12 75.5 67 56.7
HanXRQChr15g0477181 Helianthus annuus HOM05D006290 ORTHO05D007734 2.1e-11 72.8 108 45.4
Peaxi162Scf00634g00115 Petunia axillaris HOM05D006290 ORTHO05D007734 1.0e-10 70.5 82 51.2
RcHm_v2.0_Chr4g0435471 Rosa chinensis HOM05D006108 ORTHO05D007605 1.7e-10 69.7 72 51.4
HanXRQChr17g0552191 Helianthus annuus HOM05D006290 ORTHO05D007734 2.3e-10 69.3 101 42.6
Sed0022191 Sechium edule HOM05D006290 ORTHO05D007734 2.3e-10 69.3 155 34.2
CAN.G257.59 Capsicum annuum HOM05D006290 ORTHO05D007734 3.0e-10 68.9 85 44.7
MELO3C012234.2 Cucumis melo HOM05D006290 ORTHO05D007734 3.0e-10 68.9 55 61.8
PGSC0003DMG400021769 Solanum tuberosum HOM05D006290 ORTHO05D007734 1.9e-09 66.2 83 45.8
ECA246G4651 Erigeron canadensis HOM05D006290 ORTHO05D007734 2.5e-09 65.9 83 49.4
Potri.015G053600 Populus trichocarpa HOM05D006290 ORTHO05D007734 2.5e-09 65.9 96 42.7
Solyc12g150113.1 Solanum lycopersicum HOM05D006290 ORTHO05D007734 3.3e-09 65.5 83 44.6
Sopen12g017530 Solanum pennellii HOM05D006290 ORTHO05D007734 3.3e-09 65.5 83 44.6
SalBow8G3983 Salvia bowleyana HOM05D006290 ORTHO05D007734 3.6e-08 62.0 47 63.8
Prupe.1G308900 Prunus persica HOM05D006290 ORTHO05D007734 8.1e-08 60.8 51 64.7
Actinidia14876 Actinidia chinensis HOM05D006290 ORTHO05D007734 1.1e-07 60.5 69 55.1
Cc04_g07230 Coffea canephora HOM05D006290 ORTHO05D007734 1.1e-07 60.5 88 37.5
BcaC08g45952 Brassica carinata HOM05D006290 ORTHO05D007734 2.3e-07 59.3 52 61.5
MD06G1215000 Malus domestica HOM05D006290 ORTHO05D007734 2.3e-07 59.3 101 39.6
Solyc05g150121.1 Solanum lycopersicum HOM05D006290 ORTHO05D007734 4.0e-07 58.5 61 54.1
MD16G1044400 Malus domestica HOM05D006290 ORTHO05D007734 5.2e-07 58.2 48 64.6
Cfa019791 Carpinus fangiana HOM05D006108 ORTHO05D007605 6.8e-07 57.8 72 45.8
C06p41250 Brassica napus HOM05D006290 ORTHO05D007734 8.9e-07 57.4 49 57.1
unitig_26.g10264 Utricularia gibba HOM05D000483 ORTHO05D000158 1.2e-06 57.0 70 42.9
Thecc.03G033500 Theobroma cacao HOM05D006290 ORTHO05D007734 5.8e-06 54.7 73 46.6


User provided reference genes

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