Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018590 Carpinus fangiana HOM05D004123 ORTHO05D004768 5.3e-113 411.0 202 100.0
Haze_17490 Corylus avellana HOM05D004123 ORTHO05D004768 3.1e-97 358.6 217 88.0
QL01p041642 Quercus lobata HOM05D004123 ORTHO05D004768 1.6e-85 319.7 210 78.1
CiPaw.15G085900 Carya illinoinensis HOM05D004123 ORTHO05D004768 1.3e-79 300.1 211 74.9
CiPaw.16G065300 Carya illinoinensis HOM05D004123 ORTHO05D004768 1.5e-62 243.4 197 67.0
Thecc.02G229500 Theobroma cacao HOM05D004123 ORTHO05D004768 6.4e-58 228.0 212 63.7
Duzib268G1624 Durio zibethinus HOM05D004123 ORTHO05D004768 3.3e-54 215.7 213 60.6
Duzib251G0145 Durio zibethinus HOM05D004123 ORTHO05D004768 4.3e-54 215.3 212 62.3
Duzib248G0829 Durio zibethinus HOM05D004123 ORTHO05D004768 2.3e-52 209.5 212 60.8
Gohir.A04G098200 Gossypium hirsutum HOM05D004123 ORTHO05D004768 5.2e-52 208.4 214 58.9
Gohir.D04G137875 Gossypium hirsutum HOM05D004123 ORTHO05D004768 9.9e-51 204.1 214 57.9
Gorai.012G122600 Gossypium raimondii HOM05D004123 ORTHO05D004768 9.9e-51 204.1 214 57.9
Potri.008G121200 Populus trichocarpa HOM05D004123 ORTHO05D004768 1.1e-49 200.7 216 57.9
Potri.010G124200 Populus trichocarpa HOM05D004123 ORTHO05D004768 4.1e-49 198.7 213 56.3
Prupe.1G311900 Prunus persica HOM05D004123 ORTHO05D004768 7.1e-49 198.0 236 54.7
Nn3g17856 Nelumbo nucifera HOM05D004123 ORTHO05D004768 1.7e-47 193.4 218 54.1
Manes.14G103000 Manihot esculenta HOM05D004123 ORTHO05D004768 3.0e-47 192.6 216 56.9
Sabra08G0091900 Salix brachista HOM05D004123 ORTHO05D004768 3.9e-47 192.2 212 57.1
Cpa.g.sc350.1 Carica papaya HOM05D004123 ORTHO05D004768 1.9e-46 189.9 217 58.1
GSVIVG01011890001 Vitis vinifera HOM05D004123 ORTHO05D004768 1.9e-46 189.9 205 54.6
Sed0009095 Sechium edule HOM05D004123 ORTHO05D004768 3.3e-46 189.1 218 54.6
VMungo0720G2589 Vigna mungo HOM05D004123 ORTHO05D004768 4.3e-46 188.7 209 55.5
Medtr1g110710 Medicago truncatula HOM05D004123 ORTHO05D004768 9.6e-46 187.6 227 53.7
Phvul.007G027700 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 1.6e-45 186.8 217 54.8
TAR622G0492 Trochodendron aralioides HOM05D004123 ORTHO05D004768 4.7e-45 185.3 226 52.7
Glyma.10G273800 Glycine max HOM05D004123 ORTHO05D004768 1.4e-44 183.7 213 53.1
Lj5g0020149 Lotus japonicus HOM05D004123 ORTHO05D004768 1.7e-42 176.8 227 52.9
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 2.2e-42 176.4 219 50.7
Lalb_Chr02g0145931 Lupinus albus HOM05D004123 ORTHO05D004768 6.4e-42 174.9 217 52.1
MELO3C003021.2 Cucumis melo HOM05D004123 ORTHO05D004768 3.2e-41 172.6 223 51.6
CsaV3_5G023110 Cucumis sativus L. HOM05D004123 ORTHO05D004768 3.2e-41 172.6 222 53.6
TPR.G18823 Trifolium pratense HOM05D004123 ORTHO05D004768 1.6e-40 170.2 233 51.1
Ciclev10018307m.g Citrus clementina HOM05D004123 ORTHO05D004768 3.5e-40 169.1 223 52.0
Lj5g0023256 Lotus japonicus HOM05D004123 ORTHO05D004768 3.5e-40 169.1 219 48.4
Ca_03055_v3 Cicer arietinum L. HOM05D004123 ORTHO05D004768 3.9e-39 165.6 218 51.8
ClCG03G009600 Citrullus lanatus HOM05D004123 ORTHO05D004768 1.9e-38 163.3 218 52.3
Manes.06G067400 Manihot esculenta HOM05D004123 ORTHO05D004768 3.3e-38 162.5 195 55.9
Lalb_Chr21g0308891 Lupinus albus HOM05D004123 ORTHO05D004768 4.3e-38 162.2 216 49.1
FvH4_4g27300 Fragaria vesca HOM05D004123 ORTHO05D004768 1.3e-37 160.6 242 51.7
Dinv31634 Davidia involucrata HOM05D004123 ORTHO05D004768 1.6e-37 160.2 210 51.9
Psat6g227440 Pisum sativum HOM05D004123 ORTHO05D004768 6.2e-37 158.3 222 50.0
Lj2g0014688 Lotus japonicus HOM05D004123 ORTHO05D004768 2.6e-35 152.9 215 48.8
Aqoxy3G00286 Aquilegia oxysepala HOM05D004123 ORTHO05D004768 9.9e-35 151.0 244 48.0
Rhsim09G0107600 Rhododendron simsii HOM05D004123 ORTHO05D004768 3.2e-33 146.0 217 49.8
Sed0004295 Sechium edule HOM05D004123 ORTHO05D004768 7.1e-33 144.8 182 50.0
FAN07G2244 Fragaria x ananassa HOM05D004123 ORTHO05D004768 2.1e-32 143.3 236 48.7
TWI31G0276 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 3.5e-32 142.5 189 54.5
VMungo1215G3079 Vigna mungo HOM05D004123 ORTHO05D004768 6.0e-32 141.7 225 44.4
Phvul.003G031000 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 1.3e-31 140.6 222 43.7
FAN12G0145 Fragaria x ananassa HOM05D004123 ORTHO05D004768 3.0e-31 139.4 237 47.7
FAN12G0921 Fragaria x ananassa HOM05D004123 ORTHO05D004768 3.0e-31 139.4 237 47.7
MD13G1040900 Malus domestica HOM05D004123 ORTHO05D004768 3.0e-31 139.4 233 46.8
vmacro10561 Vaccinium macrocarpon HOM05D004123 ORTHO05D004768 5.1e-31 138.7 217 46.5
Gohir.D02G170500 Gossypium hirsutum HOM05D004123 ORTHO05D004768 6.6e-31 138.3 219 47.9
Gorai.005G191500 Gossypium raimondii HOM05D004123 ORTHO05D004768 1.5e-30 137.1 219 47.9
MD16G1042200 Malus domestica HOM05D004123 ORTHO05D004768 1.9e-30 136.7 228 45.6
Glyma.20G116200 Glycine max HOM05D004123 ORTHO05D004768 2.5e-30 136.3 211 45.0
Dinv21080 Davidia involucrata HOM05D004123 ORTHO05D004768 3.3e-30 136.0 177 49.2
Lalb_Chr10g0100051 Lupinus albus HOM05D004123 ORTHO05D004768 3.3e-30 136.0 195 44.6
Gohir.A03G147300 Gossypium hirsutum HOM05D004123 ORTHO05D004768 6.2e-29 131.7 219 48.4
Nn4g23857 Nelumbo nucifera HOM05D004123 ORTHO05D004768 1.4e-28 130.6 223 42.2
Oeu034240.1 Olea europaea HOM05D004123 ORTHO05D004768 5.3e-28 128.6 200 44.5
COL.COLO4_03992 Corchorus olitorius HOM05D004123 ORTHO05D004768 9.0e-28 127.9 192 51.0
MSTRG.844 Avicennia marina HOM05D004123 ORTHO05D004768 1.5e-27 127.1 195 48.2
Cc11_g10070 Coffea canephora HOM05D004123 ORTHO05D004768 2.0e-27 126.7 220 43.6
Eucgr.G02316 Eucalyptus grandis HOM05D004123 ORTHO05D004768 2.0e-27 126.7 219 42.0
MSTRG.13535 Avicennia marina HOM05D004123 ORTHO05D004768 7.6e-27 124.8 190 46.3
Oeu043592.1 Olea europaea HOM05D004123 ORTHO05D004768 9.9e-27 124.4 197 47.2
Nitab4.5_0003373g0030 Nicotiana tabacum HOM05D004123 ORTHO05D004768 1.7e-26 123.6 167 50.9
CSS0040364 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 2.9e-26 122.9 204 44.6
TAR374G0469 Trochodendron aralioides HOM05D004123 ORTHO05D004768 2.9e-26 122.9 149 50.3
SHI16201 Sapria himalayana HOM05D004123 ORTHO05D004768 1.4e-25 120.6 220 43.2
RcHm_v2.0_Chr4g0435091 Rosa chinensis HOM05D004123 ORTHO05D004768 1.9e-25 120.2 242 43.8
TWI75G1885 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 1.9e-25 120.2 201 47.3
CANSAT01G1980 Cannabis sativa HOM05D004123 ORTHO05D004768 2.4e-25 119.8 199 48.2
Actinidia14896 Actinidia chinensis HOM05D004123 ORTHO05D004768 1.2e-24 117.5 211 44.1
Nitab4.5_0000791g0080 Nicotiana tabacum HOM05D004123 ORTHO05D004768 3.5e-24 115.9 166 50.6
PGR119G1213 Punica granatum HOM05D004123 ORTHO05D004768 1.3e-23 114.0 161 47.8
Medtr1g110740 Medicago truncatula HOM05D004123 ORTHO05D004768 3.0e-23 112.8 136 52.2
arahy.Tifrunner.gnm1.ann1.U1U6XH Arachis hypogaea HOM05D004123 ORTHO05D004768 8.1e-21 104.8 207 43.0
Lsat_1_v5_gn_8_40481 Lactuca sativa HOM05D004123 ORTHO05D004768 1.4e-20 104.0 185 48.1
Migut.L01390 Erythranthe guttata HOM05D004123 ORTHO05D004768 1.8e-20 103.6 201 40.8
FAN22G2099 Fragaria x ananassa HOM05D004123 ORTHO05D004768 2.4e-20 103.2 234 41.9
arahy.Tifrunner.gnm1.ann1.1XFG43 Arachis hypogaea HOM05D004123 ORTHO05D004768 2.0e-19 100.1 221 39.4
Lsat_1_v5_gn_3_59041 Lactuca sativa HOM05D004123 ORTHO05D004768 2.0e-19 100.1 165 44.8
arahy.Tifrunner.gnm1.ann1.A2D7P4 Arachis hypogaea HOM05D004123 ORTHO05D004768 3.4e-19 99.4 197 42.1
Sopen05g005180 Solanum pennellii HOM05D004123 ORTHO05D004768 4.5e-19 99.0 186 40.9
DCAR_026735 Daucus carota HOM05D004123 ORTHO05D004768 5.8e-19 98.6 153 46.4
HanXRQChr09g0252701 Helianthus annuus HOM05D004123 ORTHO05D004768 5.8e-19 98.6 160 45.6
Solyc05g009380.4 Solanum lycopersicum HOM05D004123 ORTHO05D004768 2.2e-18 96.7 210 38.6
CAN.G610.78 Capsicum annuum HOM05D004123 ORTHO05D004768 4.9e-18 95.5 215 37.2
CDE12G0443 Ceratophyllum demersum HOM05D004123 ORTHO05D004768 8.4e-18 94.7 150 46.0
SalBow8G0349 Salvia bowleyana HOM05D004123 ORTHO05D004768 2.5e-17 93.2 184 41.8
Lj6C757T7 Lonicera japonica HOM05D004123 ORTHO05D004768 9.3e-17 91.3 236 36.0
HanXRQChr08g0213911 Helianthus annuus HOM05D004123 ORTHO05D004768 2.1e-16 90.1 145 44.8
Thhalv10019033m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 6.0e-16 88.6 216 39.4
BcaC08g46276 Brassica carinata HOM05D004123 ORTHO05D004768 6.7e-15 85.1 216 38.9
C06p41480 Brassica napus HOM05D004123 ORTHO05D004768 6.7e-15 85.1 216 38.9
BolC6t39275H Brassica oleracea HOM05D004123 ORTHO05D004768 6.7e-15 85.1 216 38.9
PSO063G6205 Papaver somniferum HOM05D004123 ORTHO05D004768 6.7e-15 85.1 220 40.5
Ca_11169_v3 Cicer arietinum L. HOM05D004123 ORTHO05D004768 1.5e-14 84.0 155 42.6
PSO782G4509 Papaver somniferum HOM05D004123 ORTHO05D004768 1.5e-14 84.0 218 39.4
Sp5g23550 Schrenkiella parvula HOM05D004123 ORTHO05D004768 1.9e-14 83.6 216 38.9
BcaB03g15826 Brassica carinata HOM05D004123 ORTHO05D004768 5.7e-14 82.0 215 39.1
TPR.G971 Trifolium pratense HOM05D004123 ORTHO05D004768 2.1e-13 80.1 75 62.7
A07p34880 Brassica napus HOM05D004123 ORTHO05D004768 4.8e-13 79.0 217 38.7
SalBow8G0756 Salvia bowleyana HOM05D004123 ORTHO05D004768 1.4e-12 77.4 188 38.8
AL2G27340 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 1.8e-12 77.0 216 37.0
unitig_747.g21201 Utricularia gibba HOM05D004123 ORTHO05D004768 1.8e-12 77.0 193 35.8
CARHR061260 Cardamine hirsuta HOM05D004123 ORTHO05D004768 2.4e-12 76.6 213 35.7
Aa31sc366G10 Aethionema arabicum HOM05D004123 ORTHO05D004768 5.3e-12 75.5 201 35.3
Psat6g226920 Pisum sativum HOM05D004123 ORTHO05D004768 5.3e-12 75.5 143 42.0
C02p24750 Brassica napus HOM05D004123 ORTHO05D004768 1.5e-11 73.9 183 38.8
unitig_22.g6557 Utricularia gibba HOM05D004123 ORTHO05D004768 1.5e-11 73.9 208 37.0
BolC2t08567H Brassica oleracea HOM05D004123 ORTHO05D004768 4.5e-11 72.4 181 38.7
AT1G68480 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 7.6e-11 71.6 215 34.9
Peaxi162Scf00382g00826 Petunia axillaris HOM05D004123 ORTHO05D004768 7.6e-11 71.6 89 51.7
A02p15050 Brassica napus HOM05D004123 ORTHO05D004768 1.3e-10 70.9 193 38.3
Carub.0002s1499 Capsella rubella HOM05D004123 ORTHO05D004768 2.2e-10 70.1 213 34.7
Zm00001eb335100 Zea mays HOM05D004123 ORTHO05D004768 2.2e-10 70.1 157 37.6
Zm00001eb125440 Zea mays HOM05D004123 ORTHO05D004768 8.4e-10 68.2 160 38.8
Lsat_1_v5_gn_8_41281 Lactuca sativa HOM05D004123 ORTHO05D004768 1.1e-09 67.8 118 44.9
AT1G13400 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 9.3e-09 64.7 145 42.1
BraA02t06569Z Brassica rapa HOM05D004123 ORTHO05D004768 1.2e-08 64.3 187 37.4
ATR1125G037 Amborella trichopoda HOM05D004123 ORTHO05D004768 2.7e-08 63.2 131 40.5
unitig_8.g3254 Utricularia gibba HOM05D004123 ORTHO05D004768 3.5e-08 62.8 195 34.9
THA.LOC104805254 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 4.6e-08 62.4 149 39.6
Thhalv10009343m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 6.1e-08 62.0 153 39.9
C08p16160 Brassica napus HOM05D004123 ORTHO05D004768 1.0e-07 61.2 150 38.7
Sp1g11890 Schrenkiella parvula HOM05D004123 ORTHO05D004768 1.0e-07 61.2 149 39.6
ECA233G4891 Erigeron canadensis HOM05D004123 ORTHO05D004768 1.8e-07 60.5 126 39.7
Sc04g0006360 Simmondsia chinensis HOM05D004123 ORTHO05D004768 1.8e-07 60.5 221 32.1
THA.LOC104821930 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 5.1e-07 58.9 166 34.9
Os01g0129200 Oryza sativa ssp. japonica HOM05D004123 ORTHO05D004768 6.7e-07 58.5 161 34.8
Ah.03g137600 Amaranthus hybridus HOM05D004123 ORTHO05D004768 1.9e-06 57.0 159 37.1
DCAR_007247 Daucus carota HOM05D004123 ORTHO05D004768 3.3e-06 56.2 144 34.7
THA.LOC104805006 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 5.7e-06 55.5 211 31.3


User provided reference genes

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