Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018585 Carpinus fangiana HOM05D004679 ORTHO05D005524 5.0e-152 541.2 298 100.0
Haze_17496 Corylus avellana HOM05D004679 ORTHO05D005524 3.6e-142 508.4 302 94.4
CiPaw.15G086800 Carya illinoinensis HOM05D004679 ORTHO05D005524 1.1e-79 300.8 307 57.0
CiPaw.16G065600 Carya illinoinensis HOM05D004679 ORTHO05D005524 3.4e-76 289.3 309 57.6
QL01p041129 Quercus lobata HOM05D004679 ORTHO05D005524 8.5e-59 231.5 308 55.5
Thecc.02G227400 Theobroma cacao HOM05D004679 ORTHO05D005524 3.6e-57 226.1 321 50.2
Duzib268G0767 Durio zibethinus HOM05D004679 ORTHO05D005524 5.7e-55 218.8 322 47.5
Manes.06G066900 Manihot esculenta HOM05D004679 ORTHO05D005524 8.2e-54 214.9 321 48.3
COL.COLO4_05113 Corchorus olitorius HOM05D004679 ORTHO05D005524 1.2e-52 211.1 315 43.5
Gohir.A03G147600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 7.7e-52 208.4 321 44.9
Gorai.005G192000 Gossypium raimondii HOM05D004679 ORTHO05D005524 1.7e-51 207.2 321 44.5
Potri.010G123600 Populus trichocarpa HOM05D004679 ORTHO05D005524 1.7e-51 207.2 329 42.9
Potri.008G121700 Populus trichocarpa HOM05D004679 ORTHO05D005524 8.5e-51 204.9 327 46.5
Sabra10G0093600 Salix brachista HOM05D004679 ORTHO05D005524 1.5e-50 204.1 326 48.2
Duzib248G1266 Durio zibethinus HOM05D004679 ORTHO05D005524 1.6e-49 200.7 321 46.1
Manes.14G103500 Manihot esculenta HOM05D004679 ORTHO05D005524 1.6e-49 200.7 319 48.6
Dinv31629 Davidia involucrata HOM05D004679 ORTHO05D005524 3.4e-47 193.0 305 44.6
TWI31G1336 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 5.7e-47 192.2 322 46.9
Duzib251G0437 Durio zibethinus HOM05D004679 ORTHO05D005524 3.7e-46 189.5 315 40.6
Sabra08G0092400 Salix brachista HOM05D004679 ORTHO05D005524 3.1e-45 186.4 324 45.4
Ciclev10015600m.g Citrus clementina HOM05D004679 ORTHO05D005524 5.4e-45 185.7 334 44.0
TWI79G1695 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 1.2e-44 184.5 325 46.2
Gohir.D02G170800 Gossypium hirsutum HOM05D004679 ORTHO05D005524 5.9e-44 182.2 274 44.5
FAN12G2517 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.5e-42 177.6 314 43.6
FvH4_4g27210 Fragaria vesca HOM05D004679 ORTHO05D005524 5.5e-42 175.6 314 45.5
FAN12G3270 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.2e-41 174.5 314 45.2
RcHm_v2.0_Chr4g0435001 Rosa chinensis HOM05D004679 ORTHO05D005524 1.4e-40 171.0 311 45.0
FAN22G1304 Fragaria x ananassa HOM05D004679 ORTHO05D005524 4.0e-40 169.5 314 44.3
Nitab4.5_0003715g0040 Nicotiana tabacum HOM05D004679 ORTHO05D005524 4.0e-40 169.5 317 38.5
CSS0006602 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 6.8e-40 168.7 300 42.3
FAN07G0705 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.2e-39 167.9 314 37.9
CSS0017035 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 1.5e-39 167.5 300 41.7
MELO3C012256.2 Cucumis melo HOM05D004679 ORTHO05D005524 2.0e-39 167.2 326 35.6
Hma1.2p1_0061F.1_g033750 Hydrangea macrophylla HOM05D004679 ORTHO05D005524 3.4e-39 166.4 311 46.3
Sopen05g005230 Solanum pennellii HOM05D004679 ORTHO05D005524 7.5e-39 165.2 309 43.0
ClCG05G022630 Citrullus lanatus HOM05D004679 ORTHO05D005524 9.8e-39 164.9 324 37.7
Cc11_g10010 Coffea canephora HOM05D004679 ORTHO05D005524 9.8e-39 164.9 307 44.6
Solyc05g009420.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 9.8e-39 164.9 309 43.0
CsaV3_5G034410 Cucumis sativus L. HOM05D004679 ORTHO05D005524 2.2e-38 163.7 326 35.0
Atru.chr11.115 Acer truncatum HOM05D004679 ORTHO05D005524 2.8e-38 163.3 328 43.6
Nitab4.5_0005669g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 2.8e-38 163.3 313 37.7
PGSC0003DMG400014542 Solanum tuberosum HOM05D004679 ORTHO05D005524 3.7e-38 162.9 301 43.9
Lj6P756T16 Lonicera japonica HOM05D004679 ORTHO05D005524 6.3e-38 162.2 311 39.2
Gohir.A04G097850 Gossypium hirsutum HOM05D004679 ORTHO05D005524 8.3e-38 161.8 316 36.4
Actinidia16661 Actinidia chinensis HOM05D004679 ORTHO05D005524 2.4e-37 160.2 185 47.6
CSS0010437 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 3.5e-36 156.4 320 43.4
Nn4g23867 Nelumbo nucifera HOM05D004679 ORTHO05D005524 3.5e-36 156.4 309 46.0
CSS0014673 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 4.5e-36 156.0 320 43.8
Prupe.1G312600 Prunus persica HOM05D004679 ORTHO05D005524 6.6e-35 152.1 322 40.1
Dinv21072 Davidia involucrata HOM05D004679 ORTHO05D005524 1.9e-34 150.6 242 43.0
Glyma.08G261000 Glycine max HOM05D004679 ORTHO05D005524 2.5e-34 150.2 304 40.5
THA.LOC104821925 Tarenaya hassleriana HOM05D004679 ORTHO05D005524 2.5e-34 150.2 327 43.4
Rhsim09G0106900 Rhododendron simsii HOM05D004679 ORTHO05D005524 5.6e-34 149.1 304 36.5
MD16G1041500 Malus domestica HOM05D004679 ORTHO05D005524 1.2e-33 147.9 318 41.5
Phvul.003G030600 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 2.8e-33 146.7 321 31.8
CANSAT01G1145 Cannabis sativa HOM05D004679 ORTHO05D005524 3.6e-33 146.4 313 42.8
TAR371G1108 Trochodendron aralioides HOM05D004679 ORTHO05D005524 3.6e-33 146.4 316 37.0
Migut.L01056 Erythranthe guttata HOM05D004679 ORTHO05D005524 8.0e-33 145.2 322 38.2
TPR.G27958 Trifolium pratense HOM05D004679 ORTHO05D005524 1.4e-32 144.4 312 33.3
Cpa.g.sc1.28 Carica papaya HOM05D004679 ORTHO05D005524 4.0e-32 142.9 201 44.3
Nn3g17866 Nelumbo nucifera HOM05D004679 ORTHO05D005524 4.0e-32 142.9 318 38.4
Eucgr.B03012 Eucalyptus grandis HOM05D004679 ORTHO05D005524 1.2e-31 141.4 320 35.0
MD13G1040500 Malus domestica HOM05D004679 ORTHO05D005524 1.2e-31 141.4 317 36.0
Medtr5g056480 Medicago truncatula HOM05D004679 ORTHO05D005524 1.5e-31 141.0 315 37.5
TAR629G3220 Trochodendron aralioides HOM05D004679 ORTHO05D005524 1.5e-31 141.0 318 40.3
VMungo1215G2497 Vigna mungo HOM05D004679 ORTHO05D005524 1.5e-31 141.0 313 34.8
Psat2g095800 Pisum sativum HOM05D004679 ORTHO05D005524 3.4e-31 139.8 310 35.8
Gohir.D04G137600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 5.7e-31 139.0 313 33.9
Gorai.012G122000 Gossypium raimondii HOM05D004679 ORTHO05D005524 5.7e-31 139.0 313 34.2
SGA_v2.0_scaffold38G14941 Striga asiatica HOM05D004679 ORTHO05D005524 5.7e-31 139.0 305 35.1
MSTRG.7662 Avicennia marina HOM05D004679 ORTHO05D005524 1.1e-29 134.8 309 35.9
SGA_v2.0_scaffold36G14543 Striga asiatica HOM05D004679 ORTHO05D005524 1.1e-29 134.8 305 34.4
arahy.Tifrunner.gnm1.ann1.ZDDP39 Arachis hypogaea HOM05D004679 ORTHO05D005524 3.2e-29 133.3 300 33.0
Glyma.01G080500 Glycine max HOM05D004679 ORTHO05D005524 3.2e-29 133.3 317 38.8
Sed0011079 Sechium edule HOM05D004679 ORTHO05D005524 1.6e-28 131.0 319 34.2
Oeu003185.3 Olea europaea HOM05D004679 ORTHO05D005524 1.3e-27 127.9 299 32.4
Lalb_Chr04g0254681 Lupinus albus HOM05D004679 ORTHO05D005524 1.7e-27 127.5 304 33.9
Lalb_Chr10g0100061 Lupinus albus HOM05D004679 ORTHO05D005524 3.0e-27 126.7 307 39.1
MSTRG.848 Avicennia marina HOM05D004679 ORTHO05D005524 3.9e-27 126.3 314 35.0
Nitab4.5_0005548g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 3.9e-27 126.3 293 35.2
SalBow8G2470 Salvia bowleyana HOM05D004679 ORTHO05D005524 3.9e-27 126.3 306 34.0
MBI09_g16518_MAGBIO Magnolia biondii HOM05D004679 ORTHO05D005524 1.9e-26 124.0 312 33.3
Nitab4.5_0000057g0200 Nicotiana tabacum HOM05D004679 ORTHO05D005524 3.3e-26 123.2 291 35.4
Lj2g0027656 Lotus japonicus HOM05D004679 ORTHO05D005524 4.3e-26 122.9 315 36.5
Sed0013939 Sechium edule HOM05D004679 ORTHO05D005524 4.3e-26 122.9 330 31.2
Sp5g23510 Schrenkiella parvula HOM05D004679 ORTHO05D005524 5.6e-26 122.5 326 39.9
BcaB03g15806 Brassica carinata HOM05D004679 ORTHO05D005524 2.8e-25 120.2 310 35.5
Ca_07534_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 3.6e-25 119.8 314 38.2
Aqoxy3G00274 Aquilegia oxysepala HOM05D004679 ORTHO05D005524 8.0e-25 118.6 321 39.9
Oeu034235.1 Olea europaea HOM05D004679 ORTHO05D005524 8.0e-25 118.6 293 32.4
BcaC08g46281 Brassica carinata HOM05D004679 ORTHO05D005524 1.0e-24 118.2 320 38.8
BcaC08g46285 Brassica carinata HOM05D004679 ORTHO05D005524 1.0e-24 118.2 320 38.8
PGR102G2503 Punica granatum HOM05D004679 ORTHO05D005524 1.0e-24 118.2 319 40.4
Sc14g0007400 Simmondsia chinensis HOM05D004679 ORTHO05D005524 2.3e-24 117.1 308 38.3
BcaB05g24380 Brassica carinata HOM05D004679 ORTHO05D005524 5.2e-24 115.9 321 39.6
A02p14990 Brassica napus HOM05D004679 ORTHO05D005524 6.8e-24 115.5 324 39.8
C06p41510 Brassica napus HOM05D004679 ORTHO05D005524 6.8e-24 115.5 321 38.9
BolC6t39272H Brassica oleracea HOM05D004679 ORTHO05D005524 6.8e-24 115.5 321 38.9
ClCG08G005010 Citrullus lanatus HOM05D004679 ORTHO05D005524 8.9e-24 115.2 307 32.6
AT1G68440 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 1.5e-23 114.4 329 34.3
Psat6g226440 Pisum sativum HOM05D004679 ORTHO05D005524 1.5e-23 114.4 158 41.8
BolC2t08557H Brassica oleracea HOM05D004679 ORTHO05D005524 2.0e-23 114.0 324 39.8
AL2G27300 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 4.4e-23 112.8 329 38.6
BcaC03g14945 Brassica carinata HOM05D004679 ORTHO05D005524 4.4e-23 112.8 320 39.4
Ca_11162_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 5.8e-23 112.5 304 39.1
A07p34850 Brassica napus HOM05D004679 ORTHO05D005524 7.5e-23 112.1 317 38.2
C02p24550 Brassica napus HOM05D004679 ORTHO05D005524 7.5e-23 112.1 324 39.8
Carub.0002s1495 Capsella rubella HOM05D004679 ORTHO05D005524 9.8e-23 111.7 333 38.4
CARHR061220 Cardamine hirsuta HOM05D004679 ORTHO05D005524 3.7e-22 109.8 325 38.5
CsaV3_6G003280 Cucumis sativus L. HOM05D004679 ORTHO05D005524 3.7e-22 109.8 313 33.9
Glyma.10G273200 Glycine max HOM05D004679 ORTHO05D005524 4.9e-22 109.4 188 37.8
Ah.02g128020 Amaranthus hybridus HOM05D004679 ORTHO05D005524 1.4e-21 107.8 316 34.8
Sp1g22820 Schrenkiella parvula HOM05D004679 ORTHO05D005524 1.9e-21 107.5 321 38.0
Thhalv10018918m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 9.2e-21 105.1 322 40.1
TPR.G18826 Trifolium pratense HOM05D004679 ORTHO05D005524 1.2e-20 104.8 294 37.8
MELO3C011535.2 Cucumis melo HOM05D004679 ORTHO05D005524 3.5e-20 103.2 315 30.5
DCAR_026738 Daucus carota HOM05D004679 ORTHO05D005524 3.5e-20 103.2 261 33.3
Glyma.20G116700 Glycine max HOM05D004679 ORTHO05D005524 1.0e-19 101.7 187 36.9
Sed0007978 Sechium edule HOM05D004679 ORTHO05D005524 1.0e-19 101.7 305 31.1
Lsat_1_v5_gn_4_15920 Lactuca sativa HOM05D004679 ORTHO05D005524 2.3e-19 100.5 258 36.8
HanXRQChr16g0529431 Helianthus annuus HOM05D004679 ORTHO05D005524 5.0e-19 99.4 260 40.4
VMungo0720G2998 Vigna mungo HOM05D004679 ORTHO05D005524 8.6e-19 98.6 263 39.9
C07p18590 Brassica napus HOM05D004679 ORTHO05D005524 1.1e-18 98.2 319 34.2
BolC7t42370H Brassica oleracea HOM05D004679 ORTHO05D005524 1.1e-18 98.2 319 34.2
Ah.03g137540 Amaranthus hybridus HOM05D004679 ORTHO05D005524 1.5e-18 97.8 297 37.7
BraA02t06566Z Brassica rapa HOM05D004679 ORTHO05D005524 1.5e-18 97.8 324 38.0
Phvul.007G028300 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 1.5e-18 97.8 190 36.3
BcaC06g35214 Brassica carinata HOM05D004679 ORTHO05D005524 2.5e-18 97.1 319 34.2
DCAR_030166 Daucus carota HOM05D004679 ORTHO05D005524 1.2e-17 94.7 269 31.6
A07p12580 Brassica napus HOM05D004679 ORTHO05D005524 2.8e-17 93.6 312 31.4
Eucgr.G02311 Eucalyptus grandis HOM05D004679 ORTHO05D005524 3.6e-17 93.2 302 35.4
BraA07t29036Z Brassica rapa HOM05D004679 ORTHO05D005524 8.1e-17 92.0 313 32.9
Gohir.A05G321608 Gossypium hirsutum HOM05D004679 ORTHO05D005524 8.1e-17 92.0 253 38.7
PGSC0003DMG400005982 Solanum tuberosum HOM05D004679 ORTHO05D005524 8.1e-17 92.0 293 31.4
AT1G25400 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 1.1e-16 91.7 317 32.8
AL1G39920 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 1.4e-16 91.3 308 32.8
AUR62035202 Chenopodium quinoa HOM05D004679 ORTHO05D005524 3.1e-16 90.1 190 33.7
Lalb_Chr21g0308861 Lupinus albus HOM05D004679 ORTHO05D005524 3.1e-16 90.1 290 33.1
PSO017G6556 Papaver somniferum HOM05D004679 ORTHO05D005524 3.1e-16 90.1 266 39.5
BcaB03g14040 Brassica carinata HOM05D004679 ORTHO05D005524 4.0e-16 89.7 314 34.4
Solyc04g007250.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 3.4e-15 86.7 294 28.6
Sopen04g002310 Solanum pennellii HOM05D004679 ORTHO05D005524 1.7e-14 84.3 299 28.1
CDE06G1731 Ceratophyllum demersum HOM05D004679 ORTHO05D005524 2.9e-14 83.6 299 28.4
Medtr1g110550 Medicago truncatula HOM05D004679 ORTHO05D005524 4.9e-14 82.8 273 35.9
EL10Ac6g14380 Beta vulgaris HOM05D004679 ORTHO05D005524 6.4e-14 82.4 307 38.1
Carub.0001s2510 Capsella rubella HOM05D004679 ORTHO05D005524 1.1e-13 81.6 313 28.1
Lj5g0021418 Lotus japonicus HOM05D004679 ORTHO05D005524 1.1e-13 81.6 168 33.3
CARHR026080 Cardamine hirsuta HOM05D004679 ORTHO05D005524 1.4e-13 81.3 318 26.4
Thhalv10008406m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 1.4e-13 81.3 310 34.5
Lalb_Chr06g0166021 Lupinus albus HOM05D004679 ORTHO05D005524 9.2e-13 78.6 284 33.8
ECA234G4300 Erigeron canadensis HOM05D004679 ORTHO05D005524 1.2e-09 68.2 124 36.3
Aa31LG7G9090 Aethionema arabicum HOM05D004679 ORTHO05D005524 1.6e-09 67.8 292 32.9


User provided reference genes

Program Settings