Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018573 Carpinus fangiana HOM05D000529 ORTHO05D000472 2.4e-67 258.8 141 100.0
Haze_17507 Corylus avellana HOM05D000529 ORTHO05D000472 1.1e-43 180.3 107 89.7
Haze_17579 Corylus avellana HOM05D000529 ORTHO05D000472 2.8e-36 155.6 107 77.6
Cfa018498 Carpinus fangiana HOM05D000529 ORTHO05D000472 2.2e-33 146.0 107 72.0
Gohir.D05G263200 Gossypium hirsutum HOM05D000529 ORTHO05D000472 6.5e-33 144.4 107 75.7
Gorai.009G275000 Gossypium raimondii HOM05D000529 ORTHO05D000472 1.9e-32 142.9 107 74.8
Manes.05G169600 Manihot esculenta HOM05D000529 ORTHO05D000472 4.2e-32 141.7 107 71.0
COL.COLO4_26439 Corchorus olitorius HOM05D000529 ORTHO05D000472 7.2e-32 141.0 107 72.9
Duzib041G0187 Durio zibethinus HOM05D000529 ORTHO05D000472 7.2e-32 141.0 107 72.9
Cpa.g.sc64.11 Carica papaya HOM05D000529 ORTHO05D000472 1.2e-31 140.2 115 68.7
Prupe.1G389500 Prunus persica HOM05D000529 ORTHO05D000472 1.2e-31 140.2 107 70.1
EL10Ac1g01813 Beta vulgaris HOM05D000529 ORTHO05D000472 1.6e-31 139.8 107 71.0
Gohir.A05G199700 Gossypium hirsutum HOM05D000529 ORTHO05D000472 3.6e-31 138.7 107 71.0
Gohir.D05G202700 Gossypium hirsutum HOM05D000529 ORTHO05D000472 3.6e-31 138.7 107 71.0
Gorai.009G208600 Gossypium raimondii HOM05D000529 ORTHO05D000472 3.6e-31 138.7 107 71.0
Dinv36002 Davidia involucrata HOM05D000529 ORTHO05D000472 6.1e-31 137.9 108 71.3
Dinv39347 Davidia involucrata HOM05D000529 ORTHO05D000472 6.1e-31 137.9 104 72.1
Hund06330 Selenicereus undatus HOM05D000529 ORTHO05D000472 1.0e-30 137.1 107 70.1
CSS0020808 Camellia sinensis var. sinensis HOM05D000529 ORTHO05D000472 2.3e-30 136.0 115 67.8
CSS0046943 Camellia sinensis var. sinensis HOM05D000529 ORTHO05D000472 2.3e-30 136.0 115 67.8
Ciclev10000281m.g Citrus clementina HOM05D000529 ORTHO05D000472 5.1e-30 134.8 107 68.2
Glyma.14G079600 Glycine max HOM05D000529 ORTHO05D000472 5.1e-30 134.8 115 66.1
Hma1.2p1_0337F.1_g129230 Hydrangea macrophylla HOM05D000529 ORTHO05D000472 6.7e-30 134.4 115 67.8
TWI56G1471 Tripterygium wilfordii HOM05D000529 ORTHO05D000472 6.7e-30 134.4 107 70.1
Phvul.001G018900 Phaseolus vulgaris HOM05D000529 ORTHO05D000472 8.7e-30 134.0 115 65.2
Glyma.17G245500 Glycine max HOM05D000529 ORTHO05D000472 1.1e-29 133.7 115 67.0
VMungo0647G1042 Vigna mungo HOM05D000529 ORTHO05D000472 1.5e-29 133.3 115 65.2
Ah.05g178400 Amaranthus hybridus HOM05D000529 ORTHO05D000472 1.9e-29 132.9 107 66.4
Gorai.002G130700 Gossypium raimondii HOM05D000529 ORTHO05D000472 5.7e-29 131.3 107 65.4
Gohir.D01G106500 Gossypium hirsutum HOM05D000529 ORTHO05D000472 7.4e-29 131.0 107 65.4
TWI56G0719 Tripterygium wilfordii HOM05D000529 ORTHO05D000472 7.4e-29 131.0 107 66.4
Gohir.A01G118200 Gossypium hirsutum HOM05D000529 ORTHO05D000472 9.7e-29 130.6 107 65.4
Lj4A49T79 Lonicera japonica HOM05D000529 ORTHO05D000472 1.3e-28 130.2 107 65.4
Lj5g0007019 Lotus japonicus HOM05D000529 ORTHO05D000472 1.3e-28 130.2 107 66.4
Sc02g0006820 Simmondsia chinensis HOM05D000529 ORTHO05D000472 1.3e-28 130.2 107 65.4
Potri.014G035700 Populus trichocarpa HOM05D000529 ORTHO05D000472 2.2e-28 129.4 107 66.4
TWI36G0871 Tripterygium wilfordii HOM05D000529 ORTHO05D000472 2.2e-28 129.4 107 65.4
CiPaw.15G065600 Carya illinoinensis HOM05D000529 ORTHO05D000472 2.8e-28 129.0 107 65.4
AUR62031372 Chenopodium quinoa HOM05D000529 ORTHO05D000472 2.8e-28 129.0 107 66.4
FvH4_2g40720 Fragaria vesca HOM05D000529 ORTHO05D000472 2.8e-28 129.0 115 62.6
TAR628G0230 Trochodendron aralioides HOM05D000431 ORTHO05D000472 2.8e-28 129.0 115 63.5
Medtr1g021100 Medicago truncatula HOM05D000529 ORTHO05D000472 4.8e-28 128.3 107 66.4
FAN15G0230 Fragaria x ananassa HOM05D000529 ORTHO05D000472 8.2e-28 127.5 115 62.6
Lsat_1_v5_gn_1_19281 Lactuca sativa HOM05D000529 ORTHO05D000472 8.2e-28 127.5 115 63.5
Oeu033639.1 Olea europaea HOM05D000529 ORTHO05D000472 1.1e-27 127.1 107 64.5
RcHm_v2.0_Chr6g0299881 Rosa chinensis HOM05D000529 ORTHO05D000472 1.1e-27 127.1 115 63.5
Oeu009568.1 Olea europaea HOM05D000529 ORTHO05D000472 1.4e-27 126.7 107 64.5
MD08G1042500 Malus domestica HOM05D000529 ORTHO05D000472 1.8e-27 126.3 115 60.0
Nn5g29354 Nelumbo nucifera HOM05D000529 ORTHO05D000472 1.8e-27 126.3 107 62.6
DCAR_020939 Daucus carota HOM05D000529 ORTHO05D000472 2.4e-27 125.9 115 60.0
MD08G1041800 Malus domestica HOM05D000529 ORTHO05D000472 2.4e-27 125.9 115 59.1
Ca_13313_v3 Cicer arietinum L. HOM05D000529 ORTHO05D000472 5.3e-27 124.8 107 62.6
FAN27G0934 Fragaria x ananassa HOM05D000529 ORTHO05D000472 5.3e-27 124.8 115 60.0
Eucgr.F02383 Eucalyptus grandis HOM05D000529 ORTHO05D000472 6.9e-27 124.4 107 62.6
Atru.chr13.609 Acer truncatum HOM05D000529 ORTHO05D000472 9.1e-27 124.0 115 62.6
vmacro21576 Vaccinium macrocarpon HOM05D000529 ORTHO05D000472 9.1e-27 124.0 107 63.6
VMungo0647G0275 Vigna mungo HOM05D000529 ORTHO05D000472 9.1e-27 124.0 107 61.7
ECA247G1205 Erigeron canadensis HOM05D000529 ORTHO05D000472 1.2e-26 123.6 107 61.7
ClCG05G019540 Citrullus lanatus HOM05D000529 ORTHO05D000472 1.5e-26 123.2 107 59.8
TPR.G13696 Trifolium pratense HOM05D000529 ORTHO05D000472 1.5e-26 123.2 115 59.1
MSTRG.1325 Avicennia marina HOM05D000529 ORTHO05D000472 2.0e-26 122.9 107 62.6
Psat6g011240 Pisum sativum HOM05D000529 ORTHO05D000472 2.0e-26 122.9 107 62.6
Potri.002G129300 Populus trichocarpa HOM05D000529 ORTHO05D000472 2.0e-26 122.9 107 62.6
Sabra14G0025500 Salix brachista HOM05D000529 ORTHO05D000472 2.0e-26 122.9 107 62.6
Duzib093G1494 Durio zibethinus HOM05D000529 ORTHO05D000472 2.6e-26 122.5 107 61.7
Sabra02G0101400 Salix brachista HOM05D000529 ORTHO05D000472 2.6e-26 122.5 107 62.6
Sed0018592 Sechium edule HOM05D000529 ORTHO05D000472 2.6e-26 122.5 107 59.8
AUR62033886 Chenopodium quinoa HOM05D000529 ORTHO05D000472 3.4e-26 122.1 107 64.5
Phvul.001G018800 Phaseolus vulgaris HOM05D000529 ORTHO05D000472 3.4e-26 122.1 107 59.8
HanXRQChr05g0129181 Helianthus annuus HOM05D000529 ORTHO05D000472 4.5e-26 121.7 107 60.7
CsaV3_4G034000 Cucumis sativus L. HOM05D000529 ORTHO05D000472 5.9e-26 121.3 107 57.9
QL02p006227 Quercus lobata HOM05D000529 ORTHO05D000472 5.9e-26 121.3 105 57.1
MELO3C016725.2 Cucumis melo HOM05D000529 ORTHO05D000472 7.7e-26 120.9 107 57.9
SGA_v2.0_scaffold217G42412 Striga asiatica HOM05D000529 ORTHO05D000472 1.0e-25 120.6 107 63.6
Aqoxy5G01761_Aqoxy5G01762 Aquilegia oxysepala HOM05D000529 ORTHO05D000472 1.7e-25 119.8 107 61.7
Lalb_Chr24g0399151 Lupinus albus HOM05D000529 ORTHO05D000472 1.7e-25 119.8 107 60.7
Glyma.14G079500 Glycine max HOM05D000529 ORTHO05D000472 2.2e-25 119.4 107 58.9
Glyma.17G245600 Glycine max HOM05D000529 ORTHO05D000472 2.9e-25 119.0 107 58.9
Actinidia15273 Actinidia chinensis HOM05D000529 ORTHO05D000472 5.0e-25 118.2 107 61.7
MD08G1042400 Malus domestica HOM05D000529 ORTHO05D000472 6.5e-25 117.9 116 58.6
arahy.Tifrunner.gnm1.ann1.3L0H24 Arachis hypogaea HOM05D000529 ORTHO05D000472 8.5e-25 117.5 107 58.9
arahy.Tifrunner.gnm1.ann1.FF44RV Arachis hypogaea HOM05D000529 ORTHO05D000472 8.5e-25 117.5 107 58.9
Rhsim06G0041900 Rhododendron simsii HOM05D000529 ORTHO05D000472 8.5e-25 117.5 104 62.5
CAN.G371.66 Capsicum annuum HOM05D000529 ORTHO05D000472 3.2e-24 115.5 107 58.9
SalBow7G4054 Salvia bowleyana HOM05D000529 ORTHO05D000472 9.4e-24 114.0 107 58.9
AL7G18240 Arabidopsis lyrata HOM05D000529 ORTHO05D000472 1.2e-23 113.6 107 56.1
MSTRG.25117 Avicennia marina HOM05D000529 ORTHO05D000472 1.2e-23 113.6 115 57.4
Nn6g32096 Nelumbo nucifera HOM05D000529 ORTHO05D000472 1.6e-23 113.2 109 57.8
AT4G33300 Arabidopsis thaliana HOM05D000529 ORTHO05D000472 2.7e-23 112.5 107 53.3
Solyc04g079420.3 Solanum lycopersicum HOM05D000529 ORTHO05D000472 2.7e-23 112.5 107 57.9
Sopen04g033030 Solanum pennellii HOM05D000529 ORTHO05D000472 2.7e-23 112.5 107 57.9
PGSC0003DMG400007999 Solanum tuberosum HOM05D000529 ORTHO05D000472 2.7e-23 112.5 107 57.9
C03p86760 Brassica napus HOM05D000529 ORTHO05D000472 3.6e-23 112.1 107 56.1
BcaC01g00997 Brassica carinata HOM05D000529 ORTHO05D000472 4.6e-23 111.7 107 55.1
A08p17700 Brassica napus HOM05D000529 ORTHO05D000472 4.6e-23 111.7 107 55.1
BolC3t20969H Brassica oleracea HOM05D000529 ORTHO05D000472 4.6e-23 111.7 107 55.1
BraA08t33720Z Brassica rapa HOM05D000529 ORTHO05D000472 4.6e-23 111.7 107 55.1
Ca_13314_v3 Cicer arietinum L. HOM05D000529 ORTHO05D000472 6.1e-23 111.3 107 54.2
HanXRQChr02g0046611 Helianthus annuus HOM05D000529 ORTHO05D000472 6.1e-23 111.3 105 57.1
Psat6g011320 Pisum sativum HOM05D000529 ORTHO05D000472 6.1e-23 111.3 107 54.2
Thhalv10024421m.g Eutrema salsugineum HOM05D000529 ORTHO05D000472 1.4e-22 110.2 107 54.2
BcaB03g12806 Brassica carinata HOM05D000529 ORTHO05D000472 3.0e-22 109.0 107 54.2
Psat6g011280 Pisum sativum HOM05D000529 ORTHO05D000472 8.8e-22 107.5 108 58.3
MBI16_g24703_MAGBIO Magnolia biondii HOM05D000529 ORTHO05D000472 1.5e-21 106.7 103 53.4
Aa31LG7G9260 Aethionema arabicum HOM05D000529 ORTHO05D000472 2.6e-21 105.9 107 52.3
Medtr1g021110 Medicago truncatula HOM05D000529 ORTHO05D000472 2.6e-21 105.9 107 56.1
BcaC09g52139 Brassica carinata HOM05D000529 ORTHO05D000472 3.3e-21 105.5 107 53.3
BcaC09g52148 Brassica carinata HOM05D000529 ORTHO05D000472 3.3e-21 105.5 107 52.3
C01p05330 Brassica napus HOM05D000529 ORTHO05D000472 3.3e-21 105.5 107 52.3
BolC1t00513H Brassica oleracea HOM05D000529 ORTHO05D000472 3.3e-21 105.5 107 52.3
Actinidia22597 Actinidia chinensis HOM05D000529 ORTHO05D000472 4.4e-21 105.1 107 54.2
CANSAT25G0052 Cannabis sativa HOM05D000529 ORTHO05D000472 4.4e-21 105.1 115 53.9
PGR031G3276 Punica granatum HOM05D000529 ORTHO05D000472 5.7e-21 104.8 107 51.4
Sp7g31030 Schrenkiella parvula HOM05D000529 ORTHO05D000472 7.4e-21 104.4 107 52.3
CARHR240480 Cardamine hirsuta HOM05D000529 ORTHO05D033773 9.7e-21 104.0 107 51.4
PGR031G1757 Punica granatum HOM05D000529 ORTHO05D000472 9.7e-21 104.0 107 52.3
THA.LOC104803687 Tarenaya hassleriana HOM05D000529 ORTHO05D000472 9.7e-21 104.0 115 51.3
A01p04930 Brassica napus HOM05D000529 ORTHO05D000472 1.3e-20 103.6 107 51.4
BraA01t00475Z Brassica rapa HOM05D000529 ORTHO05D000472 1.3e-20 103.6 107 51.4
Carub.0007s0717 Capsella rubella HOM05D000529 ORTHO05D000472 2.2e-20 102.8 107 48.6
C01p06470 Brassica napus HOM05D000529 ORTHO05D000472 4.8e-20 101.7 107 52.3
CARHR241370 Cardamine hirsuta HOM05D000529 ORTHO05D000472 8.2e-20 100.9 107 48.6
BolC1t00641H Brassica oleracea HOM05D000529 ORTHO05D000472 2.4e-19 99.4 107 51.4
AL7G19240 Arabidopsis lyrata HOM05D000529 ORTHO05D000472 3.1e-19 99.0 107 51.4
Lj5g0004486 Lotus japonicus HOM05D000529 ORTHO05D000472 3.1e-19 99.0 108 50.9
AT3G26470 Arabidopsis thaliana HOM05D000529 ORTHO05D000472 6.9e-19 97.8 107 50.5
arahy.Tifrunner.gnm1.ann1.CDD4S1 Arachis hypogaea HOM05D000529 ORTHO05D000472 1.7e-17 93.2 82 64.6
arahy.Tifrunner.gnm1.ann1.EUC3GX Arachis hypogaea HOM05D000529 ORTHO05D000472 1.7e-17 93.2 82 64.6
PGR031G2883 Punica granatum HOM05D000529 ORTHO05D000472 2.2e-17 92.8 108 46.3
AL6G14380 Arabidopsis lyrata HOM05D000529 ORTHO05D000472 7.4e-13 77.8 105 43.8
Peaxi162Scf01092g00129 Petunia axillaris HOM05D000529 ORTHO05D000472 7.4e-13 77.8 124 45.2
AT5G04720 Arabidopsis thaliana HOM05D000529 ORTHO05D000472 1.3e-12 77.0 105 42.9
Aa31LG11G5560 Aethionema arabicum HOM05D000529 ORTHO05D000472 1.1e-11 73.9 104 41.3
CARHR176930 Cardamine hirsuta HOM05D000529 ORTHO05D000472 1.4e-11 73.6 79 46.8
C09p72120 Brassica napus HOM05D000529 ORTHO05D000472 4.1e-11 72.0 107 39.3
BolC9t59956H Brassica oleracea HOM05D000529 ORTHO05D000472 4.1e-11 72.0 107 39.3
BraA10t45190Z Brassica rapa HOM05D000529 ORTHO05D000472 4.1e-11 72.0 107 39.3
A10p31440 Brassica napus HOM05D000529 ORTHO05D000472 5.3e-11 71.6 105 40.0
CARHR208570 Cardamine hirsuta HOM05D000529 ORTHO05D000472 7.0e-11 71.2 105 39.0
BcaB05g21752 Brassica carinata HOM05D000529 ORTHO05D000472 1.2e-10 70.5 105 38.1
CARHR175210 Cardamine hirsuta HOM05D000005 ORTHO05D012152 1.6e-10 70.1 98 38.8
Thhalv10012720m.g Eutrema salsugineum HOM05D000529 ORTHO05D000472 1.6e-10 70.1 105 38.1
AL1G47950 Arabidopsis lyrata HOM05D000529 ORTHO05D000472 3.5e-10 68.9 103 41.7
BcaB03g13136 Brassica carinata HOM05D000529 ORTHO05D000472 3.5e-10 68.9 107 43.0
Carub.0006s0361 Capsella rubella HOM05D000529 ORTHO05D000472 3.5e-10 68.9 105 39.0
Migut.M00554 Erythranthe guttata HOM05D000529 ORTHO05D000472 5.9e-10 68.2 70 54.3
Sp6g38100 Schrenkiella parvula HOM05D000529 ORTHO05D000472 7.7e-10 67.8 105 38.1
AT1G33560 Arabidopsis thaliana HOM05D000529 ORTHO05D000472 2.9e-09 65.9 105 42.9
Carub.0001s3174 Capsella rubella HOM05D000529 ORTHO05D000472 3.8e-09 65.5 103 39.8
Carub.0008s0668 Capsella rubella HOM05D000529 ORTHO05D000472 1.5e-08 63.5 98 38.8
Carub.0008s0669 Capsella rubella HOM05D000529 ORTHO05D000472 1.5e-08 63.5 98 38.8
BcaB05g21751 Brassica carinata HOM05D000529 ORTHO05D000472 3.2e-08 62.4 105 36.2
C02p02030 Brassica napus HOM05D000529 ORTHO05D000472 3.2e-08 62.4 105 35.2
BolC2t06160H Brassica oleracea HOM05D000529 ORTHO05D000472 3.2e-08 62.4 105 35.2
CARHR033000 Cardamine hirsuta HOM05D000529 ORTHO05D000472 2.1e-07 59.7 78 46.2
Nitab4.5_0005577g0010 Nicotiana tabacum HOM05D000529 ORTHO05D000472 3.6e-07 58.9 81 48.1
Nitab4.5_0000068g0290 Nicotiana tabacum HOM05D000529 ORTHO05D000472 1.4e-06 57.0 57 61.4
BcaC06g32180 Brassica carinata HOM05D000529 ORTHO05D000472 1.8e-06 56.6 68 45.6


User provided reference genes

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