Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018546 Carpinus fangiana HOM05D002966 ORTHO05D003274 3.2e-40 167.9 83 100.0
Cfa010900 Carpinus fangiana HOM05D002966 ORTHO05D003274 6.1e-31 137.1 72 94.4
Haze_20100 Corylus avellana HOM05D002966 ORTHO05D003274 6.5e-25 117.1 67 91.0
Haze_20101 Corylus avellana HOM05D002966 ORTHO05D003274 6.5e-25 117.1 67 91.0
QL04p077258 Quercus lobata HOM05D002966 ORTHO05D003274 1.2e-23 112.8 67 88.1
Cpa.g.c29671.3 Carica papaya HOM05D002966 ORTHO05D003274 4.4e-21 104.4 67 83.6
Dinv19602 Davidia involucrata HOM05D002966 ORTHO05D003274 9.7e-21 103.2 67 79.1
CiPaw.11G063400 Carya illinoinensis HOM05D002966 ORTHO05D003274 1.7e-20 102.4 68 80.9
Manes.15G015100 Manihot esculenta HOM05D002966 ORTHO05D003274 1.7e-20 102.4 67 80.6
BcaB06g25505 Brassica carinata HOM05D002966 ORTHO05D003274 6.3e-20 100.5 66 77.3
Ciclev10005912m.g Citrus clementina HOM05D002966 ORTHO05D003274 6.3e-20 100.5 65 80.0
A05p36630 Brassica napus HOM05D002966 ORTHO05D003274 1.1e-19 99.8 66 77.3
BraA05t22467Z Brassica rapa HOM05D002966 ORTHO05D003274 1.1e-19 99.8 66 77.3
TWI38G0569 Tripterygium wilfordii HOM05D002966 ORTHO05D003274 1.1e-19 99.8 67 79.1
Thecc.07G160900 Theobroma cacao HOM05D002966 ORTHO05D003274 1.4e-19 99.4 67 77.6
TWI39G0520 Tripterygium wilfordii HOM05D002966 ORTHO05D003274 1.4e-19 99.4 67 76.1
Gohir.A01G096300 Gossypium hirsutum HOM05D002966 ORTHO05D003274 3.1e-19 98.2 67 77.6
Gohir.D01G080600 Gossypium hirsutum HOM05D002966 ORTHO05D003274 3.1e-19 98.2 67 77.6
Gorai.002G105300 Gossypium raimondii HOM05D002966 ORTHO05D003274 3.1e-19 98.2 67 77.6
Manes.17G045900 Manihot esculenta HOM05D002966 ORTHO05D003274 3.1e-19 98.2 67 76.1
BcaC05g29231 Brassica carinata HOM05D002966 ORTHO05D003274 4.1e-19 97.8 66 75.8
C05p55060 Brassica napus HOM05D002966 ORTHO05D003274 4.1e-19 97.8 66 75.8
BolC5t34174H Brassica oleracea HOM05D002966 ORTHO05D003274 4.1e-19 97.8 66 75.8
CARHR087390 Cardamine hirsuta HOM05D002966 ORTHO05D003274 4.1e-19 97.8 66 75.8
Peaxi162Scf00452g00614 Petunia axillaris HOM05D002966 ORTHO05D003274 4.1e-19 97.8 64 79.7
ClCG09G022620 Citrullus lanatus HOM05D002966 ORTHO05D003274 9.1e-19 96.7 67 76.1
Nn7g37912 Nelumbo nucifera HOM05D002966 ORTHO05D003274 9.1e-19 96.7 67 74.6
Thhalv10021525m.g Eutrema salsugineum HOM05D002966 ORTHO05D003274 1.2e-18 96.3 65 76.9
Sp3g11010 Schrenkiella parvula HOM05D002966 ORTHO05D003274 1.6e-18 95.9 65 75.4
AL3G24540 Arabidopsis lyrata HOM05D002966 ORTHO05D003274 2.0e-18 95.5 66 74.2
AT3G12870 Arabidopsis thaliana HOM05D002966 ORTHO05D003274 2.0e-18 95.5 66 74.2
A01p40690 Brassica napus HOM05D002966 ORTHO05D003274 2.7e-18 95.1 65 75.4
C01p52320 Brassica napus HOM05D002966 ORTHO05D003274 2.7e-18 95.1 65 75.4
BraA01t04103Z Brassica rapa HOM05D002966 ORTHO05D003274 2.7e-18 95.1 65 75.4
Duzib213G0090 Durio zibethinus HOM05D002966 ORTHO05D003274 3.5e-18 94.7 67 74.6
Nitab4.5_0002321g0020 Nicotiana tabacum HOM05D002966 ORTHO05D003274 3.5e-18 94.7 65 80.0
MELO3C012619.2 Cucumis melo HOM05D002966 ORTHO05D003274 4.5e-18 94.4 59 83.1
Lj3g0018587 Lotus japonicus HOM05D002966 ORTHO05D003274 4.5e-18 94.4 62 82.3
Rhsim06G0240500 Rhododendron simsii HOM05D002966 ORTHO05D003274 4.5e-18 94.4 67 74.6
Medtr8g445730 Medicago truncatula HOM05D002966 ORTHO05D003274 5.9e-18 94.0 63 81.0
Sabra05G0079100 Salix brachista HOM05D002966 ORTHO05D003274 5.9e-18 94.0 67 74.6
BolC1t05175H Brassica oleracea HOM05D002966 ORTHO05D003274 7.7e-18 93.6 65 75.4
CSS0037695 Camellia sinensis var. sinensis HOM05D002966 ORTHO05D003274 7.7e-18 93.6 59 83.1
CsaV3_7G022780 Cucumis sativus L. HOM05D002966 ORTHO05D003274 7.7e-18 93.6 59 81.4
MD10G1204600 Malus domestica HOM05D002966 ORTHO05D003274 7.7e-18 93.6 67 73.1
TPR.G28745 Trifolium pratense HOM05D002966 ORTHO05D003274 7.7e-18 93.6 62 82.3
Psat4g176920 Pisum sativum HOM05D002966 ORTHO05D003274 1.0e-17 93.2 58 86.2
Potri.005G096100 Populus trichocarpa HOM05D002966 ORTHO05D003274 1.7e-17 92.4 68 76.5
Prupe.4G137100 Prunus persica HOM05D002966 ORTHO05D003274 1.7e-17 92.4 67 71.6
Glyma.04G098800 Glycine max HOM05D002966 ORTHO05D003274 2.2e-17 92.0 65 76.9
Lj1P909T68 Lonicera japonica HOM05D002966 ORTHO05D003274 2.2e-17 92.0 57 82.5
Actinidia07368 Actinidia chinensis HOM05D002966 ORTHO05D003274 2.9e-17 91.7 65 76.9
Ca_00875_v3 Cicer arietinum L. HOM05D002966 ORTHO05D003274 2.9e-17 91.7 63 77.8
Ca_29620_v3 Cicer arietinum L. HOM05D002966 ORTHO05D003274 2.9e-17 91.7 63 77.8
Lalb_Chr19g0133331 Lupinus albus HOM05D002966 ORTHO05D003274 3.8e-17 91.3 64 75.0
Cc00_g21090 Coffea canephora HOM05D002966 ORTHO05D003274 5.0e-17 90.9 56 83.9
vmacro11714 Vaccinium macrocarpon HOM05D002966 ORTHO05D003274 5.0e-17 90.9 68 75.0
BcaB04g21042 Brassica carinata HOM05D002966 ORTHO05D003274 6.5e-17 90.5 66 74.2
Solyc07g066540.1 Solanum lycopersicum HOM05D002966 ORTHO05D003274 6.5e-17 90.5 56 83.9
THA.LOC104810266 Tarenaya hassleriana HOM05D002966 ORTHO05D003274 6.5e-17 90.5 66 72.7
CANSAT80G1447 Cannabis sativa HOM05D002966 ORTHO05D003274 1.1e-16 89.7 69 72.5
Sed0021245 Sechium edule HOM05D002966 ORTHO05D003274 1.1e-16 89.7 55 83.6
RcHm_v2.0_Chr5g0025961 Rosa chinensis HOM05D002966 ORTHO05D003274 1.5e-16 89.4 67 70.1
Carub.0003s1223 Capsella rubella HOM05D002966 ORTHO05D003274 1.9e-16 89.0 66 72.7
Glyma.06G100500 Glycine max HOM05D002966 ORTHO05D003274 1.9e-16 89.0 62 79.0
MD05G1223200 Malus domestica HOM05D002966 ORTHO05D003274 1.9e-16 89.0 67 70.1
Oeu002798.1 Olea europaea HOM05D002966 ORTHO05D003274 1.9e-16 89.0 70 72.9
CSS0042932 Camellia sinensis var. sinensis HOM05D002966 ORTHO05D003274 2.5e-16 88.6 57 82.5
Nitab4.5_0002633g0040 Nicotiana tabacum HOM05D002966 ORTHO05D003274 2.5e-16 88.6 54 83.3
PGSC0003DMG400022234 Solanum tuberosum HOM05D002966 ORTHO05D003274 2.5e-16 88.6 54 83.3
DCAR_019925 Daucus carota HOM05D002966 ORTHO05D003274 3.2e-16 88.2 66 72.7
Eucgr.F04429 Eucalyptus grandis HOM05D002966 ORTHO05D003274 3.2e-16 88.2 65 75.4
MSTRG.14551 Avicennia marina HOM05D002966 ORTHO05D003274 4.2e-16 87.8 56 82.1
Sopen07g034700 Solanum pennellii HOM05D002966 ORTHO05D003274 5.5e-16 87.4 54 83.3
Sed0002257 Sechium edule HOM05D002966 ORTHO05D003274 9.4e-16 86.7 59 76.3
Phvul.009G033300 Phaseolus vulgaris HOM05D002966 ORTHO05D003274 1.2e-15 86.3 63 76.2
BcaC09g48267 Brassica carinata HOM05D002966 ORTHO05D003274 1.6e-15 85.9 57 77.2
FvH4_3g15460 Fragaria vesca HOM05D002966 ORTHO05D003274 2.7e-15 85.1 67 70.1
FAN11G0046 Fragaria x ananassa HOM05D002966 ORTHO05D003274 2.7e-15 85.1 67 70.1
FAN16G2402 Fragaria x ananassa HOM05D002966 ORTHO05D003274 2.7e-15 85.1 67 70.1
FAN21G2350 Fragaria x ananassa HOM05D002966 ORTHO05D003274 2.7e-15 85.1 67 68.7
Hma1.2p1_0151F.1_g067530 Hydrangea macrophylla HOM05D002966 ORTHO05D003274 3.6e-15 84.7 57 75.4
VMungo1309G0555 Vigna mungo HOM05D002966 ORTHO05D003274 3.6e-15 84.7 56 82.1
Oeu034059.1 Olea europaea HOM05D002966 ORTHO05D003274 4.7e-15 84.3 55 78.2
SGA_v2.0_scaffold7G03599 Striga asiatica HOM05D002966 ORTHO05D003274 4.7e-15 84.3 54 75.9
Lalb_Chr03g0031721 Lupinus albus HOM05D002966 ORTHO05D003274 6.1e-15 84.0 61 73.8
FAN25G2501 Fragaria x ananassa HOM05D002966 ORTHO05D003274 8.0e-15 83.6 67 68.7
HanXRQChr11g0335081 Helianthus annuus HOM05D002966 ORTHO05D003274 2.3e-14 82.0 55 76.4
PGR031G3508 Punica granatum HOM05D002966 ORTHO05D003274 2.3e-14 82.0 51 82.4
Aqoxy1G01476 Aquilegia oxysepala HOM05D002966 ORTHO05D003274 4.0e-14 81.3 56 75.0
SalBow8G2246 Salvia bowleyana HOM05D002966 ORTHO05D003274 5.2e-14 80.9 56 75.0
Atru.BG.175.p Acer truncatum HOM05D002966 ORTHO05D003274 8.8e-14 80.1 51 80.4
unitig_744.g24504 Utricularia gibba HOM05D004000 ORTHO05D004629 8.8e-14 80.1 54 72.2
PSO170G3509 Papaver somniferum HOM05D002966 ORTHO05D003274 1.5e-13 79.3 68 69.1
PSO528G0254 Papaver somniferum HOM05D002966 ORTHO05D003274 1.5e-13 79.3 68 69.1
Ah.16g106440 Amaranthus hybridus HOM05D002966 ORTHO05D003274 2.0e-13 79.0 54 75.9
Eucgr.F04302 Eucalyptus grandis HOM05D002966 ORTHO05D003274 2.0e-13 79.0 55 78.2
Aqoxy6G02814 Aquilegia oxysepala HOM05D002966 ORTHO05D003274 2.6e-13 78.6 69 65.2
Migut.H01679 Erythranthe guttata HOM05D002966 ORTHO05D003274 5.7e-13 77.4 55 76.4
AUR62026777 Chenopodium quinoa HOM05D002966 ORTHO05D003274 7.5e-13 77.0 54 74.1
MBI02_g00520_MAGBIO Magnolia biondii HOM05D002966 ORTHO05D003274 3.7e-12 74.7 51 74.5
Aa31LG8G110 Aethionema arabicum HOM05D002966 ORTHO05D003274 5.4e-11 70.9 58 63.8
SGA_v2.0_scaffold239G44041 Striga asiatica HOM05D002966 ORTHO05D003274 2.7e-10 68.6 51 66.7
ATR0763G105 Amborella trichopoda HOM05D002966 ORTHO05D003274 5.9e-10 67.4 56 64.3
Cfa020466 Carpinus fangiana HOM05D002966 ORTHO05D003274 2.2e-09 65.5 42 81.0
Os03g0778400 Oryza sativa ssp. japonica HOM05D002966 ORTHO05D003274 3.2e-08 61.6 53 56.6
Zm00001eb057330 Zea mays HOM05D002966 ORTHO05D003274 3.2e-08 61.6 64 50.0
Zm00001eb213650 Zea mays HOM05D002966 ORTHO05D003274 3.2e-08 61.6 64 50.0
Lsat_1_v5_gn_2_120921 Lactuca sativa HOM05D002966 ORTHO05D003274 2.1e-07 58.9 59 59.3
Zm00001eb059720 Zea mays HOM05D002966 ORTHO05D003274 3.6e-07 58.2 64 48.4
HPP92_000947 Vanilla planifolia HOM05D002966 ORTHO05D003274 6.1e-07 57.4 52 57.7
Zm00001eb059740 Zea mays HOM05D002966 ORTHO05D003274 1.4e-06 56.2 64 48.4
ATR0053G034 Amborella trichopoda HOM05D002966 ORTHO05D003274 5.2e-06 54.3 59 47.5


User provided reference genes

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