Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018539 Carpinus fangiana HOM05D000955 ORTHO05D001429 1.4e-53 212.6 99 100.0
Cfa018538 Carpinus fangiana HOM05D000955 ORTHO05D001429 1.2e-33 146.4 92 71.7
Cfa017932 Carpinus fangiana HOM05D000955 ORTHO05D001429 8.0e-30 133.7 98 65.3
Cfa018541 Carpinus fangiana HOM05D000955 ORTHO05D001429 6.4e-27 124.0 96 57.3
Haze_18217 Corylus avellana HOM05D000955 ORTHO05D001429 1.1e-26 123.2 93 62.4
CiPaw.15G059700 Carya illinoinensis HOM05D000955 ORTHO05D001429 2.5e-15 85.5 95 44.2
CiPaw.15G059200 Carya illinoinensis HOM05D000955 ORTHO05D001429 5.6e-15 84.3 80 48.8
CiPaw.15G059500 Carya illinoinensis HOM05D000955 ORTHO05D001429 1.8e-13 79.3 92 44.6
CiPaw.15G059300 Carya illinoinensis HOM05D000955 ORTHO05D001429 2.3e-13 79.0 88 43.2
CiPaw.15G059900 Carya illinoinensis HOM05D000955 ORTHO05D001429 3.1e-13 78.6 79 46.8
QL02p005092 Quercus lobata HOM05D000955 ORTHO05D001429 5.2e-13 77.8 68 57.4
CiPaw.15G059800 Carya illinoinensis HOM05D000955 ORTHO05D001429 8.9e-13 77.0 72 51.4
QL02p004953 Quercus lobata HOM05D000955 ORTHO05D001429 1.5e-12 76.3 98 41.8
QL02p005052 Quercus lobata HOM05D000955 ORTHO05D001429 1.5e-12 76.3 98 41.8
Cfa018540 Carpinus fangiana HOM05D000955 ORTHO05D001429 2.0e-12 75.9 83 43.4
Prupe.1G436800 Prunus persica HOM05D000955 ORTHO05D001429 2.0e-12 75.9 87 46.0
Prupe.1G437000 Prunus persica HOM05D000955 ORTHO05D001429 2.0e-12 75.9 87 46.0
CiPaw.15G059400 Carya illinoinensis HOM05D000955 ORTHO05D001429 3.4e-12 75.1 95 41.1
Gohir.A05G261600 Gossypium hirsutum HOM05D000955 ORTHO05D001429 7.5e-12 73.9 71 47.9
Gohir.D05G263800 Gossypium hirsutum HOM05D000955 ORTHO05D001429 7.5e-12 73.9 71 47.9
Gorai.009G275600 Gossypium raimondii HOM05D000955 ORTHO05D001429 7.5e-12 73.9 71 47.9
FvH4_2g34530 Fragaria vesca HOM05D000955 ORTHO05D001429 1.3e-11 73.2 79 45.6
Prupe.1G436900 Prunus persica HOM05D000955 ORTHO05D001429 1.7e-11 72.8 77 48.1
Cfa018544 Carpinus fangiana HOM05D000955 ORTHO05D001429 2.2e-11 72.4 83 43.4
Prupe.1G437100 Prunus persica HOM05D000955 ORTHO05D001429 2.2e-11 72.4 88 45.5
CiPaw.15G059600 Carya illinoinensis HOM05D000955 ORTHO05D001429 2.9e-11 72.0 79 44.3
FAN27G1403 Fragaria x ananassa HOM05D000955 ORTHO05D001429 2.9e-11 72.0 75 48.0
FAN20G2975 Fragaria x ananassa HOM05D000955 ORTHO05D001429 3.7e-11 71.6 75 46.7
Sed0006046 Sechium edule HOM05D000955 ORTHO05D001429 3.7e-11 71.6 82 41.5
Gohir.A05G261500 Gossypium hirsutum HOM05D000955 ORTHO05D001429 6.4e-11 70.9 71 45.1
Gohir.D05G263600 Gossypium hirsutum HOM05D000955 ORTHO05D001429 8.3e-11 70.5 71 45.1
CAN.G1938.3 Capsicum annuum HOM05D000955 ORTHO05D001429 1.1e-10 70.1 81 43.2
CsaV3_4G034260 Cucumis sativus L. HOM05D000955 ORTHO05D001429 1.1e-10 70.1 96 37.5
ECA246G1916 Erigeron canadensis HOM05D000955 ORTHO05D001429 1.9e-10 69.3 71 39.4
QL02p005085 Quercus lobata HOM05D000955 ORTHO05D001429 1.9e-10 69.3 83 43.4
ClCG05G019810 Citrullus lanatus HOM05D000955 ORTHO05D001429 2.4e-10 68.9 82 40.2
RcHm_v2.0_Chr6g0307631 Rosa chinensis HOM05D000955 ORTHO05D001429 4.1e-10 68.2 79 43.0
CAN.G705.3 Capsicum annuum HOM05D000955 ORTHO05D001429 5.4e-10 67.8 81 42.0
COL.COLO4_08734 Corchorus olitorius HOM05D000955 ORTHO05D001429 5.4e-10 67.8 79 46.8
Lsat_1_v5_gn_6_113880 Lactuca sativa HOM05D000955 ORTHO05D001429 9.2e-10 67.0 76 38.2
QL02p004948 Quercus lobata HOM05D000955 ORTHO05D001429 2.7e-09 65.5 82 40.2
Thecc.08G008700 Theobroma cacao HOM05D000955 ORTHO05D001429 2.7e-09 65.5 86 39.5
Gohir.D05G263700 Gossypium hirsutum HOM05D000955 ORTHO05D001429 6.0e-09 64.3 71 46.5
Gohir.D06G016500 Gossypium hirsutum HOM05D000955 ORTHO05D001429 6.0e-09 64.3 84 41.7
Gorai.009G275500 Gossypium raimondii HOM05D000955 ORTHO05D001429 6.0e-09 64.3 71 46.5
Gorai.010G019400 Gossypium raimondii HOM05D000955 ORTHO05D001429 6.0e-09 64.3 84 41.7
Sed0018620 Sechium edule HOM05D000955 ORTHO05D001429 6.0e-09 64.3 93 37.6
Manes.05G172701 Manihot esculenta HOM05D000955 ORTHO05D001429 7.8e-09 63.9 90 40.0
Manes.05G172901 Manihot esculenta HOM05D000955 ORTHO05D001429 7.8e-09 63.9 90 38.9
Prupe.1G437200 Prunus persica HOM05D000955 ORTHO05D001429 7.8e-09 63.9 95 38.9
QL02p005214 Quercus lobata HOM05D000023 ORTHO05D000014 7.8e-09 63.9 79 40.5
RcHm_v2.0_Chr3g0490571 Rosa chinensis HOM05D000955 ORTHO05D001429 1.0e-08 63.5 75 41.3
Atru.chr13.673 Acer truncatum HOM05D000955 ORTHO05D001429 1.3e-08 63.2 86 36.0
Actinidia22623 Actinidia chinensis HOM05D000955 ORTHO05D001429 1.7e-08 62.8 75 42.7
Gohir.A06G018300 Gossypium hirsutum HOM05D000955 ORTHO05D001429 1.7e-08 62.8 83 41.0
Nitab4.5_0000686g0120 Nicotiana tabacum HOM05D000955 ORTHO05D001429 1.7e-08 62.8 82 39.0
Nitab4.5_0002468g0040 Nicotiana tabacum HOM05D000955 ORTHO05D001429 1.7e-08 62.8 84 36.9
Nitab4.5_0006068g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 1.7e-08 62.8 84 38.1
RcHm_v2.0_Chr6g0278331 Rosa chinensis HOM05D000955 ORTHO05D001429 1.7e-08 62.8 92 39.1
Atru.chr13.662 Acer truncatum HOM05D000955 ORTHO05D001429 2.3e-08 62.4 83 36.1
MELO3C016746.2 Cucumis melo HOM05D000955 ORTHO05D001429 2.3e-08 62.4 93 36.6
Sed0000195 Sechium edule HOM05D000955 ORTHO05D001429 2.3e-08 62.4 78 37.2
Actinidia22622 Actinidia chinensis HOM05D000955 ORTHO05D001429 3.0e-08 62.0 84 41.7
Manes.04G102700 Manihot esculenta HOM05D000955 ORTHO05D001429 3.9e-08 61.6 88 37.5
Atru.chr13.685 Acer truncatum HOM05D000955 ORTHO05D001429 5.1e-08 61.2 87 39.1
Nitab4.5_0002501g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 5.1e-08 61.2 84 40.5
Potri.002G126900 Populus trichocarpa HOM05D000955 ORTHO05D001429 5.1e-08 61.2 83 39.8
Thecc.08G009000 Theobroma cacao HOM05D000955 ORTHO05D001429 5.1e-08 61.2 69 39.1
COL.COLO4_26493 Corchorus olitorius HOM05D000955 ORTHO05D001429 6.6e-08 60.8 82 36.6
Nitab4.5_0000686g0180 Nicotiana tabacum HOM05D000955 ORTHO05D001429 6.6e-08 60.8 82 37.8
PGSC0003DMG400004460 Solanum tuberosum HOM05D000955 ORTHO05D001429 6.6e-08 60.8 81 40.7
CiPaw.15G058900 Carya illinoinensis HOM05D000955 ORTHO05D001429 8.6e-08 60.5 84 41.7
Gohir.D02G091500 Gossypium hirsutum HOM05D000955 ORTHO05D001429 8.6e-08 60.5 87 39.1
Gorai.005G102600 Gossypium raimondii HOM05D000955 ORTHO05D001429 8.6e-08 60.5 87 39.1
Nitab4.5_0001024g0060 Nicotiana tabacum HOM05D000955 ORTHO05D001429 8.6e-08 60.5 84 39.3
Nitab4.5_0001101g0050 Nicotiana tabacum HOM05D000955 ORTHO05D001429 8.6e-08 60.5 79 40.5
Prupe.1G436700 Prunus persica HOM05D000955 ORTHO05D001429 8.6e-08 60.5 79 38.0
Gorai.010G019300 Gossypium raimondii HOM05D000955 ORTHO05D001429 1.1e-07 60.1 79 38.0
Nitab4.5_0000686g0100 Nicotiana tabacum HOM05D000955 ORTHO05D001429 1.1e-07 60.1 81 38.3
Nitab4.5_0000686g0170 Nicotiana tabacum HOM05D000955 ORTHO05D001429 1.1e-07 60.1 82 37.8
CAN.G371.22 Capsicum annuum HOM05D000955 ORTHO05D001429 1.5e-07 59.7 84 38.1
Gohir.A06G018101 Gossypium hirsutum HOM05D000955 ORTHO05D001429 1.5e-07 59.7 79 38.0
EL10Ac1g00552 Beta vulgaris HOM05D000955 ORTHO05D001429 1.9e-07 59.3 83 37.3
Manes.05G172801 Manihot esculenta HOM05D000955 ORTHO05D001429 1.9e-07 59.3 88 38.6
Nitab4.5_0000686g0110 Nicotiana tabacum HOM05D000955 ORTHO05D003340 1.9e-07 59.3 76 40.8
QL02p005180 Quercus lobata HOM05D000955 ORTHO05D001429 1.9e-07 59.3 93 34.4
RcHm_v2.0_Chr6g0307841 Rosa chinensis HOM05D000955 ORTHO05D001429 1.9e-07 59.3 75 38.7
Sc26g0000780 Simmondsia chinensis HOM05D000955 ORTHO05D001429 1.9e-07 59.3 84 38.1
Atru.chr13.681 Acer truncatum HOM05D000955 ORTHO05D001429 2.5e-07 58.9 77 39.0
EL10Ac5g12897 Beta vulgaris HOM05D006501 ORTHO05D008241 2.5e-07 58.9 86 37.2
MELO3C010863.2 Cucumis melo HOM05D000955 ORTHO05D001429 2.5e-07 58.9 82 37.8
Gohir.A03G076800 Gossypium hirsutum HOM05D000955 ORTHO05D001429 2.5e-07 58.9 90 37.8
Haze_17535 Corylus avellana HOM05D000955 ORTHO05D001429 3.3e-07 58.5 85 40.0
CsaV3_2G027870 Cucumis sativus L. HOM05D000955 ORTHO05D001429 3.3e-07 58.5 74 36.5
Gohir.D06G016400 Gossypium hirsutum HOM05D000955 ORTHO05D001429 3.3e-07 58.5 79 38.0
Manes.05G173000 Manihot esculenta HOM05D000955 ORTHO05D001429 3.3e-07 58.5 90 37.8
Thecc.08G009900 Theobroma cacao HOM05D000955 ORTHO05D001429 3.3e-07 58.5 82 36.6
Nitab4.5_0001101g0030 Nicotiana tabacum HOM05D000955 ORTHO05D001429 4.3e-07 58.2 81 37.0
Peaxi162Scf00303g00141 Petunia axillaris HOM05D000955 ORTHO05D001429 4.3e-07 58.2 83 37.3
Peaxi162Scf01890g00010 Petunia axillaris HOM05D000955 ORTHO05D001429 4.3e-07 58.2 86 38.4
QL02p005235 Quercus lobata HOM05D000955 ORTHO05D001429 4.3e-07 58.2 73 39.7
RcHm_v2.0_Chr6g0278301 Rosa chinensis HOM05D000955 ORTHO05D001429 4.3e-07 58.2 76 40.8
Sopen12g030730 Solanum pennellii HOM05D000955 ORTHO05D001429 4.3e-07 58.2 83 37.3
CAN.G445.5 Capsicum annuum HOM05D000955 ORTHO05D001429 5.6e-07 57.8 81 37.0
FAN20G2972 Fragaria x ananassa HOM05D017863 ORTHO05D020646 5.6e-07 57.8 80 38.8
Gohir.A05G261550 Gossypium hirsutum HOM05D000955 ORTHO05D001429 5.6e-07 57.8 71 42.3
Nitab4.5_0008115g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 5.6e-07 57.8 77 37.7
MELO3C010868.2 Cucumis melo HOM05D000955 ORTHO05D001429 7.3e-07 57.4 74 36.5
Dinv35967 Davidia involucrata HOM05D000955 ORTHO05D001429 7.3e-07 57.4 73 38.4
Manes.04G102900 Manihot esculenta HOM05D000955 ORTHO05D001429 7.3e-07 57.4 86 34.9
Sed0021895 Sechium edule HOM05D000955 ORTHO05D001429 7.3e-07 57.4 72 38.9
Sc15g0003430 Simmondsia chinensis HOM05D000955 ORTHO05D001429 7.3e-07 57.4 81 37.0
Sc26g0000770 Simmondsia chinensis HOM05D000955 ORTHO05D001429 7.3e-07 57.4 79 36.7
Thecc.08G009100 Theobroma cacao HOM05D000955 ORTHO05D001429 7.3e-07 57.4 73 37.0
Thecc.08G009700 Theobroma cacao HOM05D000955 ORTHO05D001429 7.3e-07 57.4 87 36.8
CiPaw.15G060100 Carya illinoinensis HOM05D000955 ORTHO05D001429 9.5e-07 57.0 90 32.2
Manes.04G102800 Manihot esculenta HOM05D000955 ORTHO05D001429 9.5e-07 57.0 88 35.2
Nitab4.5_0006312g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 9.5e-07 57.0 83 34.9
Nitab4.5_0015075g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 9.5e-07 57.0 82 37.8
Atru.chr13.682 Acer truncatum HOM05D000955 ORTHO05D001429 1.2e-06 56.6 78 38.5
PGSC0003DMG400023125 Solanum tuberosum HOM05D000955 ORTHO05D001429 1.2e-06 56.6 84 35.7
Atru.chr13.660 Acer truncatum HOM05D000955 ORTHO05D001429 1.6e-06 56.2 82 34.1
Nitab4.5_0000686g0190 Nicotiana tabacum HOM05D000955 ORTHO05D001429 1.6e-06 56.2 82 35.4
Sopen01g015530 Solanum pennellii HOM05D000955 ORTHO05D001429 1.6e-06 56.2 86 34.9
PGSC0003DMG400015414 Solanum tuberosum HOM05D000955 ORTHO05D001429 1.6e-06 56.2 85 36.5
Cfa018535 Carpinus fangiana HOM05D000955 ORTHO05D001429 2.1e-06 55.8 76 42.1
Peaxi162Scf00252g00112 Petunia axillaris HOM05D000955 ORTHO05D001429 2.1e-06 55.8 75 38.7
COL.COLO4_26488 Corchorus olitorius HOM05D000955 ORTHO05D001429 2.8e-06 55.5 82 34.1
MELO3C010869.2 Cucumis melo HOM05D000955 ORTHO05D001429 2.8e-06 55.5 81 33.3
Sed0019911 Sechium edule HOM05D000955 ORTHO05D001429 2.8e-06 55.5 74 32.4
Sopen04g032660 Solanum pennellii HOM05D000955 ORTHO05D001429 2.8e-06 55.5 77 36.4
Ah.05g171940 Amaranthus hybridus HOM05D000955 ORTHO05D001429 3.6e-06 55.1 78 38.5
CiPaw.15G059000 Carya illinoinensis HOM05D000955 ORTHO05D001429 3.6e-06 55.1 81 40.7
COL.COLO4_26489 Corchorus olitorius HOM05D000955 ORTHO05D001429 3.6e-06 55.1 89 37.1
Solyc12g088840.1 Solanum lycopersicum HOM05D000955 ORTHO05D001429 3.6e-06 55.1 83 37.3
Thecc.08G009300 Theobroma cacao HOM05D000955 ORTHO05D001429 3.6e-06 55.1 73 38.4
CAN.G1518.8 Capsicum annuum HOM05D000955 ORTHO05D001429 4.7e-06 54.7 83 36.1
Cfa018537 Carpinus fangiana HOM05D000955 ORTHO05D001429 4.7e-06 54.7 82 35.4
ClCG08G015850 Citrullus lanatus HOM05D000955 ORTHO05D001429 4.7e-06 54.7 81 33.3
ClCG08G015860 Citrullus lanatus HOM05D000955 ORTHO05D001429 4.7e-06 54.7 74 36.5
Manes.18G036100 Manihot esculenta HOM05D000955 ORTHO05D001429 4.7e-06 54.7 77 33.8
QL02p005158 Quercus lobata HOM05D000955 ORTHO05D001429 4.7e-06 54.7 77 35.1
MELO3C026462.2 Cucumis melo HOM05D000955 ORTHO05D001429 6.2e-06 54.3 79 34.2
CsaV3_2G027880 Cucumis sativus L. HOM05D000955 ORTHO05D001429 6.2e-06 54.3 81 33.3
Nitab4.5_0001847g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 6.2e-06 54.3 81 34.6
Nitab4.5_0010940g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 6.2e-06 54.3 85 34.1
Sed0019916 Sechium edule HOM05D000955 ORTHO05D001429 6.2e-06 54.3 77 39.0
Sopen07g012140 Solanum pennellii HOM05D000955 ORTHO05D001429 6.2e-06 54.3 84 34.5
PGSC0003DMG400008042 Solanum tuberosum HOM05D000955 ORTHO05D001429 6.2e-06 54.3 77 37.7
Manes.05G173200 Manihot esculenta HOM05D000955 ORTHO05D001429 8.1e-06 53.9 83 32.5
Sed0008712 Sechium edule HOM05D000955 ORTHO05D001429 8.1e-06 53.9 74 33.8
Sed0017113 Sechium edule HOM05D000955 ORTHO05D001429 8.1e-06 53.9 76 34.2
Thecc.04G032600 Theobroma cacao HOM05D000955 ORTHO05D001429 8.1e-06 53.9 76 32.9


User provided reference genes

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