Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018528 Carpinus fangiana HOM05D004259 ORTHO05D005014 1.4e-212 742.7 367 100.0
Haze_17552 Corylus avellana HOM05D004259 ORTHO05D005014 3.8e-194 681.4 369 93.5
CiPaw.15G061500 Carya illinoinensis HOM05D004259 ORTHO05D005014 2.2e-181 639.0 371 84.6
QL02p005360 Quercus lobata HOM05D004259 ORTHO05D005014 6.3e-181 637.5 424 76.7
Atru.chr8.1940 Acer truncatum HOM05D004259 ORTHO05D005014 4.1e-172 608.2 367 80.7
Haze_17543 Corylus avellana HOM05D004259 ORTHO05D005014 1.7e-170 602.8 302 99.0
Duzib128G0657 Durio zibethinus HOM05D004259 ORTHO05D005014 3.0e-170 602.1 357 81.2
Thecc.05G042500 Theobroma cacao HOM05D004259 ORTHO05D005014 7.3e-169 597.4 357 81.2
Sed0023883 Sechium edule HOM05D004259 ORTHO05D005014 9.5e-169 597.0 364 78.0
Ciclev10012027m.g Citrus clementina HOM05D004259 ORTHO05D005014 3.6e-168 595.1 367 78.7
CSS0003524 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 1.8e-167 592.8 358 80.7
Manes.08G078200 Manihot esculenta HOM05D004259 ORTHO05D005014 3.1e-167 592.0 367 77.7
TAR376G0692 Trochodendron aralioides HOM05D004259 ORTHO05D005014 6.8e-167 590.9 364 78.6
ClCG08G015740 Citrullus lanatus HOM05D004259 ORTHO05D005014 5.8e-166 587.8 374 76.2
Potri.003G094800 Populus trichocarpa HOM05D004259 ORTHO05D005014 5.8e-166 587.8 367 78.2
Gohir.D11G345100 Gossypium hirsutum HOM05D004259 ORTHO05D005014 7.5e-166 587.4 355 80.3
Gorai.007G375500 Gossypium raimondii HOM05D004259 ORTHO05D005014 7.5e-166 587.4 355 80.3
CANSAT01G2810 Cannabis sativa HOM05D004259 ORTHO05D005014 1.1e-164 583.6 365 78.9
MD08G1103300 Malus domestica HOM05D004259 ORTHO05D005014 1.4e-164 583.2 367 78.5
Cpa.g.sc973.4 Carica papaya HOM05D004259 ORTHO05D005014 2.4e-164 582.4 358 79.1
Gohir.A11G326200 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.5e-163 578.6 355 78.9
CsaV3_2G028020 Cucumis sativus L. HOM05D004259 ORTHO05D005014 7.8e-163 577.4 364 76.6
PSO675G0522 Papaver somniferum HOM05D004259 ORTHO05D005014 8.6e-162 573.9 365 76.4
MSTRG.24327 Avicennia marina HOM05D004259 ORTHO05D005014 1.9e-161 572.8 358 77.7
MELO3C010882.2 Cucumis melo HOM05D004259 ORTHO05D005014 4.3e-161 571.6 364 76.1
Lj3C736T6 Lonicera japonica HOM05D004259 ORTHO05D005014 2.8e-160 568.9 360 78.6
RcHm_v2.0_Chr6g0307691 Rosa chinensis HOM05D004259 ORTHO05D005014 6.2e-160 567.8 360 75.6
PSO339G6255 Papaver somniferum HOM05D004259 ORTHO05D005014 1.8e-159 566.2 365 75.6
EL10Ac3g06655 Beta vulgaris HOM05D004259 ORTHO05D005014 5.2e-159 564.7 367 75.2
FvH4_2g34610 Fragaria vesca HOM05D004259 ORTHO05D005014 1.2e-158 563.5 367 73.6
FAN15G2861 Fragaria x ananassa HOM05D001625 ORTHO05D005014 3.4e-158 562.0 357 75.1
FAN20G1942 Fragaria x ananassa HOM05D004259 ORTHO05D005014 7.5e-158 560.8 360 74.4
Peaxi162Scf00162g00029 Petunia axillaris HOM05D004259 ORTHO05D005014 1.3e-157 560.1 375 73.6
Aqoxy7G01016 Aquilegia oxysepala HOM05D004259 ORTHO05D005014 1.7e-157 559.7 364 75.5
MBI02_g17334_MAGBIO Magnolia biondii HOM05D004259 ORTHO05D005014 2.2e-157 559.3 387 71.3
Migut.N02703 Erythranthe guttata HOM05D004259 ORTHO05D005014 2.9e-157 558.9 358 74.9
THA.LOC104806568 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 2.9e-157 558.9 366 73.2
PSO541G1765 Papaver somniferum HOM05D004259 ORTHO05D005014 1.1e-156 557.0 365 73.7
Peaxi162Scf00929g00211 Petunia axillaris HOM05D004259 ORTHO05D005014 1.1e-156 557.0 375 73.9
Nn1g05830 Nelumbo nucifera HOM05D004259 ORTHO05D005014 1.4e-156 556.6 364 73.6
Oeu018211.1 Olea europaea HOM05D004259 ORTHO05D005014 3.2e-156 555.4 367 73.6
Eucgr.F00239 Eucalyptus grandis HOM05D004259 ORTHO05D005014 7.1e-156 554.3 361 74.0
PGR031G2227 Punica granatum HOM05D004259 ORTHO05D005014 7.1e-156 554.3 365 74.2
Sopen06g029870 Solanum pennellii HOM05D004259 ORTHO05D005014 1.2e-155 553.5 365 74.8
Solyc06g073510.3 Solanum lycopersicum HOM05D004259 ORTHO05D005014 2.1e-155 552.7 365 74.5
AUR62022427 Chenopodium quinoa HOM05D004259 ORTHO05D005014 2.7e-155 552.4 367 73.8
AUR62039303 Chenopodium quinoa HOM05D004259 ORTHO05D005014 3.5e-155 552.0 367 73.6
A05p08400 Brassica napus HOM05D004259 ORTHO05D005014 4.6e-155 551.6 366 73.0
Dinv39327 Davidia involucrata HOM05D004259 ORTHO05D005014 6.0e-155 551.2 322 83.2
BraA05t19805Z Brassica rapa HOM05D004259 ORTHO05D005014 1.0e-154 550.4 366 73.0
HanXRQChr04g0103531 Helianthus annuus HOM05D004259 ORTHO05D005014 1.0e-154 550.4 358 74.3
PGSC0003DMG400027003 Solanum tuberosum HOM05D004259 ORTHO05D005014 1.0e-154 550.4 365 74.0
Lsat_1_v5_gn_1_20280 Lactuca sativa HOM05D004259 ORTHO05D005014 1.3e-154 550.1 361 73.4
THA.LOC104809222 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 2.3e-154 549.3 368 73.1
Glyma.14G082100 Glycine max HOM05D004259 ORTHO05D005014 5.1e-154 548.1 361 72.9
Ca_01811_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 1.5e-153 546.6 365 73.7
Ca_29610_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 1.5e-153 546.6 365 73.7
Sabra03G0064000 Salix brachista HOM05D004259 ORTHO05D005014 1.5e-153 546.6 360 75.6
Phvul.001G021100 Phaseolus vulgaris HOM05D004259 ORTHO05D005014 2.5e-153 545.8 361 72.9
BcaB02g09273 Brassica carinata HOM05D004259 ORTHO05D005014 1.2e-152 543.5 366 71.6
Lj5g0003666 Lotus japonicus HOM05D004259 ORTHO05D005014 1.2e-152 543.5 357 72.0
Sabra11G0061200 Salix brachista HOM05D004259 ORTHO05D005014 1.2e-152 543.5 362 74.9
BcaC02g11869 Brassica carinata HOM05D004259 ORTHO05D005014 1.6e-152 543.1 366 71.9
BolC4t22638H Brassica oleracea HOM05D004259 ORTHO05D005014 3.6e-152 542.0 366 72.1
C04p10400 Brassica napus HOM05D004259 ORTHO05D005014 8.1e-152 540.8 358 72.6
VMungo0647G0522 Vigna mungo HOM05D004259 ORTHO05D005014 2.3e-151 539.3 357 72.8
Thhalv10016846m.g Eutrema salsugineum HOM05D004259 ORTHO05D005014 4.0e-151 538.5 358 72.3
CAN.G65.190 Capsicum annuum HOM05D004259 ORTHO05D005014 1.5e-150 536.6 372 71.8
Carub.0004s1948 Capsella rubella HOM05D004259 ORTHO05D005014 2.6e-150 535.8 366 71.3
Nitab4.5_0002664g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 3.4e-150 535.4 395 68.6
CARHR132030 Cardamine hirsuta HOM05D004259 ORTHO05D005014 4.4e-150 535.0 358 71.8
Sp4g19910 Schrenkiella parvula HOM05D004259 ORTHO05D005014 9.9e-150 533.9 366 71.6
TPR.G17553 Trifolium pratense HOM05D004259 ORTHO05D005014 1.1e-148 530.4 349 73.4
Lalb_Chr19g0129351 Lupinus albus HOM05D004259 ORTHO05D005014 7.1e-148 527.7 364 70.6
AL4G34050 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 9.2e-148 527.3 366 70.8
Nitab4.5_0000111g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 2.1e-147 526.2 377 71.1
TWI53G0519 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 7.8e-147 524.2 360 73.6
Medtr1g019770 Medicago truncatula HOM05D004259 ORTHO05D005014 1.3e-146 523.5 349 72.2
ATR0100G023 Amborella trichopoda HOM05D004259 ORTHO05D005014 3.0e-146 522.3 364 69.2
Nitab4.5_0002045g0130 Nicotiana tabacum HOM05D004259 ORTHO05D005014 3.0e-146 522.3 359 72.7
CDE10G1325 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 1.9e-145 519.6 358 69.3
Psat6g012600 Pisum sativum HOM05D004259 ORTHO05D005014 2.5e-145 519.2 349 72.5
FAN27G2417 Fragaria x ananassa HOM05D004259 ORTHO05D005014 2.8e-144 515.8 360 69.7
SalBow2G2012 Salvia bowleyana HOM05D004259 ORTHO05D005014 8.1e-144 514.2 385 66.2
AT2G37560 Arabidopsis thaliana HOM05D004259 ORTHO05D005014 1.4e-143 513.5 366 68.6
Peaxi162Scf00003g02311 Petunia axillaris HOM05D004259 ORTHO05D005014 1.4e-143 513.5 393 67.4
unitig_26.g10027 Utricularia gibba HOM05D004259 ORTHO05D005014 1.4e-143 513.5 357 69.5
Sc07g0003460 Simmondsia chinensis HOM05D004259 ORTHO05D005014 3.1e-143 512.3 314 78.3
SalBow2G1152 Salvia bowleyana HOM05D004259 ORTHO05D005014 6.9e-143 511.1 385 66.2
Rhsim10G0028600 Rhododendron simsii HOM05D004259 ORTHO05D005014 1.5e-142 510.0 367 70.8
SalBow2G2463 Salvia bowleyana HOM05D004259 ORTHO05D005014 3.4e-142 508.8 385 66.0
arahy.Tifrunner.gnm1.ann1.1PWX74 Arachis hypogaea HOM05D004259 ORTHO05D005014 3.5e-139 498.8 365 68.2
arahy.Tifrunner.gnm1.ann1.63NC9C Arachis hypogaea HOM05D004259 ORTHO05D005014 3.5e-139 498.8 365 68.2
ECA247G2793 Erigeron canadensis HOM05D004259 ORTHO05D005014 7.8e-139 497.7 322 74.5
GSVIVG01009522001 Vitis vinifera HOM05D004259 ORTHO05D005014 8.7e-138 494.2 292 81.2
MD15G1084600 Malus domestica HOM05D004259 ORTHO05D005014 2.8e-136 489.2 371 67.9
Os03g0184700 Oryza sativa ssp. japonica HOM05D004259 ORTHO05D005014 5.3e-135 485.0 354 66.7
CSS0037728 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 1.4e-132 476.9 358 67.6
Zm00001eb248940 Zea mays HOM05D004259 ORTHO05D005014 1.4e-132 476.9 368 63.9
Hma1.2p1_0718F.1_g208420 Hydrangea macrophylla HOM05D004259 ORTHO05D005014 9.3e-132 474.2 294 79.6
Cc10_g04310 Coffea canephora HOM05D004259 ORTHO05D005014 2.1e-131 473.0 358 65.9
SGA_v2.0_scaffold204G41641 Striga asiatica HOM05D004259 ORTHO05D005014 1.9e-129 466.5 360 65.6
Nitab4.5_0004918g0050 Nicotiana tabacum HOM05D004259 ORTHO05D005014 7.4e-129 464.5 354 66.7
SalBow3G4106 Salvia bowleyana HOM05D004259 ORTHO05D005014 2.1e-128 463.0 360 64.7
Glyma.17G243200 Glycine max HOM05D004259 ORTHO05D005014 3.1e-127 459.1 292 74.3
Prupe.1G438300 Prunus persica HOM05D004259 ORTHO05D005014 2.6e-126 456.1 301 75.1
Rhsim07G0229700 Rhododendron simsii HOM05D004259 ORTHO05D005014 9.9e-126 454.1 288 77.1
Ah.05g168820 Amaranthus hybridus HOM05D001625 ORTHO05D005014 7.9e-123 444.5 301 71.4
SalBow2G2610 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.1e-116 424.1 385 59.0
vmacro04457 Vaccinium macrocarpon HOM05D004259 ORTHO05D005014 1.6e-112 410.2 358 61.5
Actinidia29866 Actinidia chinensis HOM05D004259 ORTHO05D005014 6.9e-111 404.8 358 60.1
SalBow2G0695 Salvia bowleyana HOM05D004259 ORTHO05D005014 7.6e-110 401.4 283 69.6
Rhsim10G0028100 Rhododendron simsii HOM05D004259 ORTHO05D005014 1.9e-108 396.7 367 59.9
SEGI_21568 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 6.7e-106 388.3 286 63.6
Pp3c18_14740 Physcomitrium patens HOM05D004259 ORTHO05D005014 2.6e-102 376.3 347 54.5
COL.COLO4_14836 Corchorus olitorius HOM05D004259 ORTHO05D005014 1.0e-101 374.4 357 56.3
AagrBONN_evm.TU.Sc2ySwM_344.5209 Anthoceros agrestis HOM05D004259 ORTHO05D005014 2.9e-101 372.9 356 52.0
RcHm_v2.0_Chr6g0307531 Rosa chinensis HOM05D004259 ORTHO05D005014 5.0e-101 372.1 358 56.4
TWI53G0792 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 6.1e-99 365.2 270 68.5
SHI12655 Sapria himalayana HOM05D004259 ORTHO05D005014 3.9e-98 362.5 367 54.5
Mapoly0106s0035 Marchantia polymorpha HOM05D004259 ORTHO05D005014 1.1e-97 360.9 324 52.2
SMO147G0302 Selaginella moellendorffii HOM05D004259 ORTHO05D005014 1.2e-94 350.9 339 50.7
CBR_g6665 Chara braunii HOM05D004259 ORTHO05D005014 9.4e-92 341.3 336 49.1
HPP92_027219 Vanilla planifolia HOM05D004259 ORTHO05D005014 6.3e-64 248.8 152 74.3
MCO16G222 Micromonas commoda HOM05D004259 ORTHO05D005014 2.6e-57 226.9 328 38.4
CDE10G0377 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 3.5e-54 216.5 135 73.3
PRCOL_00004897 Prasinoderma coloniale HOM05D004259 ORTHO05D005014 7.3e-44 182.2 374 32.1
HPP92_027220 Vanilla planifolia HOM05D004259 ORTHO05D005014 3.7e-40 169.9 120 70.8
Gohir.D10G137766 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.1e-39 166.4 141 58.9
Cre03.g199400 Chlamydomonas reinhardtii HOM05D004259 ORTHO05D005014 5.2e-34 149.4 338 31.1
AL4G34080 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 2.2e-32 144.1 106 70.8
Aa31LG5G22990 Aethionema arabicum HOM05D004259 ORTHO05D005014 8.4e-32 142.1 138 54.3
Nitab4.5_0000017g0120 Nicotiana tabacum HOM05D004259 ORTHO05D005014 3.2e-31 140.2 199 42.2
Gohir.D02G104501 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.3e-29 134.8 85 75.3
Gorai.005G118700 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.7e-29 134.4 85 75.3
Gorai.011G277900 Gossypium raimondii HOM05D004259 ORTHO05D005014 6.6e-29 132.5 83 74.7
Cc00_g16720 Coffea canephora HOM05D004259 ORTHO05D005014 1.1e-28 131.7 110 62.7
Gohir.D12G080700 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.5e-28 131.3 81 75.3
PSO724G0286 Papaver somniferum HOM05D004259 ORTHO05D005014 1.5e-25 121.3 110 55.5
PSO724G0742 Papaver somniferum HOM05D004259 ORTHO05D005014 4.4e-25 119.8 110 55.5
Actinidia38053 Actinidia chinensis HOM05D004259 ORTHO05D005014 4.9e-24 116.3 87 67.8
Gohir.D03G074850 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.2e-23 113.6 73 72.6
Cfa024619 Carpinus fangiana HOM05D004259 ORTHO05D005014 5.4e-23 112.8 351 25.6
Gohir.D01G124400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.2e-22 111.7 72 72.2
Gohir.D02G123750 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.2e-22 111.7 72 72.2
Gorai.008G056700 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.7e-22 110.5 73 71.2
Gorai.005G130400 Gossypium raimondii HOM05D004259 ORTHO05D005014 3.5e-22 110.2 72 70.8
Gohir.D09G120150 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.6e-22 109.8 72 70.8
Aa31sc112G60 Aethionema arabicum HOM05D004259 ORTHO05D005014 7.8e-22 109.0 81 69.1
Gohir.D04G089650 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.3e-21 108.2 73 71.2
Gohir.D10G134400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.3e-21 107.5 70 71.4
Gorai.004G133100 Gossypium raimondii HOM05D004259 ORTHO05D005014 3.0e-21 107.1 74 68.9
Gorai.006G043100 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.5e-20 104.0 95 57.9
Gorai.012G099900 Gossypium raimondii HOM05D004259 ORTHO05D005014 3.3e-20 103.6 73 68.5
Cc06_g20720 Coffea canephora HOM05D004259 ORTHO05D005014 3.6e-19 100.1 104 56.7
SEGI_22221 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 2.4e-18 97.4 77 63.6
EL10Ac4g08135 Beta vulgaris HOM05D004259 ORTHO05D005014 7.1e-15 85.9 45 88.9
Gohir.D09G088725 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.5e-14 83.6 50 80.0
Sabra15G0136400 Salix brachista HOM05D004259 ORTHO05D004947 7.9e-14 82.4 70 65.7
Cc11_g02680 Coffea canephora HOM05D004259 ORTHO05D005014 1.3e-13 81.6 54 72.2
Gorai.011G153000 Gossypium raimondii HOM05D004259 ORTHO05D005014 8.7e-13 79.0 90 48.9
Gohir.D09G037800 Gossypium hirsutum HOM05D004259 ORTHO05D005014 7.6e-09 65.9 37 86.5
Cc00_g00370 Coffea canephora HOM05D004259 ORTHO05D005014 2.2e-08 64.3 46 67.4
Cc01_g09720 Coffea canephora HOM05D004259 ORTHO05D005014 6.4e-08 62.8 37 83.8
Cc02_g31720 Coffea canephora HOM05D004259 ORTHO05D005014 1.9e-07 61.2 36 80.6
Gohir.D01G066700 Gossypium hirsutum HOM05D000706 ORTHO05D013538 3.5e-06 57.0 49 53.1
Sabra07G0018600 Salix brachista HOM05D004259 ORTHO05D003320 6.0e-06 56.2 63 52.4
Sabra18G0120100 Salix brachista HOM05D001081 ORTHO05D003320 6.0e-06 56.2 63 52.4
Cc09_g06650 Coffea canephora HOM05D004259 ORTHO05D005014 7.9e-06 55.8 36 72.2
Gohir.D09G143401 Gossypium hirsutum HOM05D000706 ORTHO05D013538 7.9e-06 55.8 49 53.1
Gorai.007G356500 Gossypium raimondii HOM05D000706 ORTHO05D013538 7.9e-06 55.8 49 53.1


User provided reference genes

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