Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 1.4e-96 356.3 176 100.0
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 2.1e-89 332.4 176 93.2
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 2.1e-89 332.4 176 93.2
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 2.8e-78 295.4 176 80.1
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 1.1e-77 293.5 175 78.9
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 4.5e-76 288.1 176 77.8
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 1.6e-73 279.6 176 74.4
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 4.7e-73 278.1 176 75.0
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 6.1e-73 277.7 176 74.4
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 1.0e-72 276.9 176 75.6
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 1.0e-72 276.9 176 75.6
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 1.8e-72 276.2 163 81.0
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 1.8e-72 276.2 176 75.0
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 6.8e-72 274.2 170 77.1
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 1.2e-71 273.5 176 74.4
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 2.0e-71 272.7 175 72.0
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 4.4e-71 271.6 175 73.1
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 7.5e-71 270.8 176 74.4
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 7.5e-71 270.8 176 72.2
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 1.3e-70 270.0 176 73.9
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 1.3e-70 270.0 176 74.4
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 1.3e-70 270.0 176 72.2
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 1.7e-70 269.6 176 72.7
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 1.7e-70 269.6 176 72.7
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 1.7e-70 269.6 176 72.7
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 2.2e-70 269.2 176 73.3
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 2.8e-70 268.9 176 72.2
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 4.8e-70 268.1 176 72.2
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 6.3e-70 267.7 176 73.3
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 8.3e-70 267.3 176 72.2
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 1.1e-69 266.9 176 72.7
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 1.1e-69 266.9 176 72.7
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 1.8e-69 266.2 176 72.7
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.1e-69 265.4 176 72.7
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 5.4e-69 264.6 176 69.3
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 9.1e-69 263.8 176 72.7
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 9.1e-69 263.8 176 69.3
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 1.2e-68 263.5 176 71.6
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 1.2e-68 263.5 174 72.4
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 1.2e-68 263.5 176 70.5
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 1.6e-68 263.1 176 72.2
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 1.6e-68 263.1 176 69.9
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 1.6e-68 263.1 176 73.3
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 2.0e-68 262.7 176 71.6
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 3.5e-68 261.9 176 69.9
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 4.5e-68 261.5 176 70.5
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 5.9e-68 261.2 176 71.0
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 5.9e-68 261.2 176 71.0
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 5.9e-68 261.2 176 70.5
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 7.7e-68 260.8 174 68.4
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 7.7e-68 260.8 176 69.9
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 1.0e-67 260.4 176 69.3
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 1.0e-67 260.4 175 69.1
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 1.0e-67 260.4 176 70.5
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 1.3e-67 260.0 175 71.4
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 1.3e-67 260.0 175 71.4
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 1.3e-67 260.0 175 71.4
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 1.3e-67 260.0 176 68.2
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 1.7e-67 259.6 176 68.2
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 2.9e-67 258.8 176 69.3
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 2.9e-67 258.8 176 71.0
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 2.9e-67 258.8 176 71.0
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 2.9e-67 258.8 176 71.0
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 2.9e-67 258.8 175 69.7
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 8.6e-67 257.3 176 70.5
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 8.6e-67 257.3 176 70.5
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 1.1e-66 256.9 176 70.5
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 1.5e-66 256.5 176 70.5
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 3.2e-66 255.4 176 68.8
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 4.2e-66 255.0 176 68.8
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 4.2e-66 255.0 176 68.8
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 9.5e-66 253.8 176 68.2
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 1.2e-65 253.4 176 67.0
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 1.2e-65 253.4 176 68.8
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 1.2e-65 253.4 176 68.2
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 1.2e-65 253.4 176 69.3
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 1.6e-65 253.1 170 68.8
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 2.1e-65 252.7 176 68.8
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 2.1e-65 252.7 176 70.5
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 2.8e-65 252.3 176 68.2
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 2.8e-65 252.3 176 67.6
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 2.8e-65 252.3 176 70.5
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 2.8e-65 252.3 176 68.2
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 4.7e-65 251.5 176 68.2
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 6.1e-65 251.1 176 68.8
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 6.1e-65 251.1 176 68.8
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 6.1e-65 251.1 176 67.6
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 6.1e-65 251.1 176 67.0
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 6.1e-65 251.1 176 69.9
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 8.0e-65 250.8 176 69.9
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 8.0e-65 250.8 175 68.0
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 1.8e-64 249.6 176 68.8
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 1.8e-64 249.6 175 67.4
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 2.3e-64 249.2 176 68.2
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 2.3e-64 249.2 176 68.2
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 4.0e-64 248.4 176 67.6
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 5.2e-64 248.1 176 64.2
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 8.8e-64 247.3 176 63.6
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 7.5e-63 244.2 150 77.3
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 9.8e-63 243.8 176 65.3
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 9.8e-63 243.8 176 67.6
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 9.8e-63 243.8 176 67.6
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 2.8e-62 242.3 176 66.5
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 2.8e-62 242.3 176 67.6
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 1.4e-61 240.0 175 65.7
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 1.8e-61 239.6 175 64.6
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 3.1e-61 238.8 176 64.2
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 3.1e-61 238.8 173 64.2
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 4.1e-61 238.4 176 63.1
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 7.0e-61 237.7 176 63.1
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 9.2e-61 237.3 173 64.2
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 1.6e-60 236.5 175 65.1
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 1.6e-60 236.5 164 68.9
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 4.5e-60 235.0 173 64.7
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 5.9e-60 234.6 176 63.1
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 7.8e-60 234.2 175 62.9
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 1.0e-59 233.8 158 69.0
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 1.0e-59 233.8 173 63.0
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 2.3e-59 232.6 166 65.1
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 6.6e-59 231.1 147 74.8
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 1.5e-58 229.9 175 60.6
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 1.5e-58 229.9 173 63.0
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 8.0e-57 224.2 161 65.8
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 2.3e-56 222.6 176 59.1
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 3.0e-56 222.2 174 60.9
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 6.8e-56 221.1 175 60.6
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 1.2e-55 220.3 172 59.9
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 2.0e-55 219.5 161 66.5
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 7.5e-55 217.6 177 59.3
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 9.8e-55 217.2 172 59.3
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 1.7e-54 216.5 158 65.2
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 2.2e-54 216.1 160 64.4
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 2.9e-54 215.7 172 58.7
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 8.3e-54 214.2 169 60.4
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 2.7e-52 209.1 157 63.7
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.0e-51 207.2 164 64.6
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.3e-51 206.8 158 61.4
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 3.6e-49 198.7 163 63.8
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 2.3e-48 196.1 157 62.4
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 4.0e-48 195.3 156 59.0
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.2e-47 193.7 132 67.4
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.4e-45 186.0 147 65.3
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 8.6e-43 177.6 112 75.0
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 1.7e-38 163.3 171 46.2
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 5.4e-37 158.3 106 70.8
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 8.1e-33 144.4 172 43.0
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 2.2e-30 136.3 161 42.2
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 1.9e-29 133.3 150 46.0
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 3.2e-29 132.5 174 39.1
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 9.6e-26 120.9 76 72.4
CBR_g38490 Chara braunii HOM05D004405 ORTHO05D005613 1.2e-25 120.6 147 40.8
PRCOL_00004317 Prasinoderma coloniale HOM05D004405 ORTHO05D005613 1.9e-18 96.7 151 39.1
Lsat_1_v5_gn_2_117301 Lactuca sativa HOM05D004405 ORTHO05D005613 8.1e-17 91.3 86 52.3
Lsat_1_v5_gn_0_36860 Lactuca sativa HOM05D004405 ORTHO05D005613 1.8e-11 73.6 74 43.2
Actinidia22615 Actinidia chinensis HOM05D004405 ORTHO05D005613 3.8e-06 55.8 43 55.8
C08p09120 Brassica napus HOM05D004405 ORTHO05D033353 6.4e-06 55.1 54 42.6
BolC8t47758H Brassica oleracea HOM05D004405 ORTHO05D033353 6.4e-06 55.1 51 45.1


User provided reference genes

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