Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018482 Carpinus fangiana HOM05D004388 ORTHO05D005106 2.1e-59 232.3 127 100.0
CiPaw.16G051700 Carya illinoinensis HOM05D004388 ORTHO05D005106 3.0e-37 158.7 124 73.4
TWI56G1138 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 1.5e-36 156.4 126 71.4
GSVIVG01009587001 Vitis vinifera HOM05D004388 ORTHO05D005106 4.3e-36 154.8 125 70.4
TAR625G0696 Trochodendron aralioides HOM05D004388 ORTHO05D005106 5.6e-36 154.5 127 67.7
Dinv36015 Davidia involucrata HOM05D004388 ORTHO05D005106 1.6e-35 152.9 126 70.6
Manes.05G168800 Manihot esculenta HOM05D004388 ORTHO05D005106 6.2e-35 151.0 125 64.8
Nn5g29406 Nelumbo nucifera HOM05D004388 ORTHO05D005106 8.1e-35 150.6 126 66.7
Cc02_g18220 Coffea canephora HOM05D004388 ORTHO05D005106 1.1e-34 150.2 125 67.2
EL10Ac1g01755 Beta vulgaris HOM05D004388 ORTHO05D005106 1.8e-34 149.4 126 66.7
Potri.014G037000 Populus trichocarpa HOM05D004388 ORTHO05D005106 2.4e-34 149.1 125 64.0
Nn6g32144 Nelumbo nucifera HOM05D004388 ORTHO05D005106 5.3e-34 147.9 128 66.4
AUR62040093 Chenopodium quinoa HOM05D004388 ORTHO05D005106 5.8e-33 144.4 124 63.7
Phvul.009G061900 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 5.8e-33 144.4 127 65.4
AUR62033874 Chenopodium quinoa HOM05D004388 ORTHO05D005106 7.6e-33 144.1 122 63.9
TAR376G0986 Trochodendron aralioides HOM05D004388 ORTHO05D005106 7.6e-33 144.1 127 67.7
Cfa004944 Carpinus fangiana HOM05D004388 ORTHO05D005106 9.9e-33 143.7 99 75.8
FvH4_7g04430 Fragaria vesca HOM05D004388 ORTHO05D005106 9.9e-33 143.7 129 65.9
FAN06G3575 Fragaria x ananassa HOM05D004388 ORTHO05D005106 9.9e-33 143.7 129 65.9
FAN10G0172 Fragaria x ananassa HOM05D004388 ORTHO05D005106 9.9e-33 143.7 129 65.1
Glyma.07G163600 Glycine max HOM05D004388 ORTHO05D005106 9.9e-33 143.7 125 64.8
FAN06G4461 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.7e-32 142.9 129 65.9
QL03p018404 Quercus lobata HOM05D004388 ORTHO05D005106 1.7e-32 142.9 120 65.0
FAN15G0910 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.8e-32 141.7 127 64.6
QL11p039202 Quercus lobata HOM05D004388 ORTHO05D005106 3.8e-32 141.7 120 63.3
Sabra14G0026600 Salix brachista HOM05D004388 ORTHO05D005106 6.4e-32 141.0 125 61.6
FAN27G3490 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.1e-31 140.2 126 65.1
FvH4_1g27200 Fragaria vesca HOM05D004388 ORTHO05D005106 1.9e-31 139.4 129 64.3
FAN03G2535 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.9e-31 139.4 129 64.3
Lalb_Chr11g0062471 Lupinus albus HOM05D004388 ORTHO05D005106 1.9e-31 139.4 126 61.1
RcHm_v2.0_Chr3g0487591 Rosa chinensis HOM05D004388 ORTHO05D005106 2.4e-31 139.0 129 63.6
FvH4_2g07330 Fragaria vesca HOM05D004388 ORTHO05D005106 3.2e-31 138.7 126 64.3
FAN24G3543 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.2e-31 138.7 126 64.3
Glyma.04G035900 Glycine max HOM05D004388 ORTHO05D005106 3.2e-31 138.7 125 62.4
Manes.15G145400 Manihot esculenta HOM05D004388 ORTHO05D005106 3.2e-31 138.7 127 65.4
Thecc.08G017000 Theobroma cacao HOM05D004388 ORTHO05D005106 3.2e-31 138.7 130 61.5
Ah.09g229630 Amaranthus hybridus HOM05D004388 ORTHO05D005106 4.2e-31 138.3 125 65.6
FAN19G2330 Fragaria x ananassa HOM05D004388 ORTHO05D005106 7.1e-31 137.5 129 63.6
FAN26G1198 Fragaria x ananassa HOM05D004388 ORTHO05D005106 7.1e-31 137.5 129 64.3
FAN28G0470 Fragaria x ananassa HOM05D004388 ORTHO05D005106 7.1e-31 137.5 129 64.3
TWI12G0249 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 9.3e-31 137.1 129 65.9
VMungo1309G1869 Vigna mungo HOM05D004388 ORTHO05D005106 1.2e-30 136.7 125 63.2
CSS0032006 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 1.6e-30 136.3 102 70.6
COL.COLO4_26416 Corchorus olitorius HOM05D004388 ORTHO05D005106 1.6e-30 136.3 127 63.0
Glyma.06G035900 Glycine max HOM05D004388 ORTHO05D005106 1.6e-30 136.3 126 62.7
Sabra09G0082900 Salix brachista HOM05D004388 ORTHO05D005106 1.6e-30 136.3 125 65.6
Ciclev10030439m.g Citrus clementina HOM05D004388 ORTHO05D005106 2.1e-30 136.0 125 62.4
MELO3C018419.2 Cucumis melo HOM05D004388 ORTHO05D005106 2.1e-30 136.0 126 63.5
Lj1g0026402 Lotus japonicus HOM05D004388 ORTHO05D005106 2.7e-30 135.6 131 60.3
Potri.009G108700 Populus trichocarpa HOM05D004388 ORTHO05D005106 2.7e-30 135.6 125 63.2
FAN28G0922 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.5e-30 135.2 129 63.6
Hma1.2p1_1527F.1_g289065 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 3.5e-30 135.2 124 62.9
FAN23G2994 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.6e-30 134.8 129 63.6
Oeu034076.1 Olea europaea HOM05D004388 ORTHO05D005106 6.0e-30 134.4 123 61.8
TWI36G1636 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 6.0e-30 134.4 128 62.5
MBI16_g31481_MAGBIO Magnolia biondii HOM05D004388 ORTHO05D005106 7.9e-30 134.0 125 62.4
arahy.Tifrunner.gnm1.ann1.2I4SWN Arachis hypogaea HOM05D004388 ORTHO05D005106 1.0e-29 133.7 129 61.2
CiPaw.05G058500 Carya illinoinensis HOM05D004388 ORTHO05D005106 1.3e-29 133.3 120 63.3
Thecc.02G028000 Theobroma cacao HOM05D004388 ORTHO05D005106 1.3e-29 133.3 126 63.5
CsaV3_7G010090 Cucumis sativus L. HOM05D004388 ORTHO05D005106 1.8e-29 132.9 126 61.9
VMungo1215G1405 Vigna mungo HOM05D004388 ORTHO05D005106 1.8e-29 132.9 121 62.8
Gohir.D01G173000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 3.0e-29 132.1 121 62.8
Gorai.010G015700 Gossypium raimondii HOM05D004388 ORTHO05D005106 3.0e-29 132.1 128 59.4
Atru.BG.71.p Acer truncatum HOM05D004388 ORTHO05D005106 3.9e-29 131.7 94 76.6
Gorai.002G214600 Gossypium raimondii HOM05D004388 ORTHO05D005106 5.1e-29 131.3 121 62.8
Prupe.8G112900 Prunus persica HOM05D004388 ORTHO05D005106 6.7e-29 131.0 127 64.6
ClCG02G005540 Citrullus lanatus HOM05D004388 ORTHO05D005106 8.7e-29 130.6 126 61.1
Duzib132G0841 Durio zibethinus HOM05D004388 ORTHO05D005106 1.1e-28 130.2 125 60.8
Eucgr.G01518 Eucalyptus grandis HOM05D004388 ORTHO05D005106 1.1e-28 130.2 125 59.2
Sc15g0006590 Simmondsia chinensis HOM05D004388 ORTHO05D005106 1.9e-28 129.4 127 61.4
Duzib248G0675 Durio zibethinus HOM05D004388 ORTHO05D005106 2.5e-28 129.0 95 72.6
BcaB01g03018 Brassica carinata HOM05D004388 ORTHO05D005106 3.3e-28 128.6 122 61.5
CSS0016442 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 3.3e-28 128.6 128 59.4
CSS0020304 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 3.3e-28 128.6 128 59.4
Glyma.20G008600 Glycine max HOM05D004388 ORTHO05D005106 3.3e-28 128.6 128 61.7
Phvul.003G011200 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 4.3e-28 128.3 125 61.6
Lalb_Chr08g0245721 Lupinus albus HOM05D004388 ORTHO05D005106 5.6e-28 127.9 127 59.1
Sp4g07480 Schrenkiella parvula HOM05D004388 ORTHO05D005106 5.6e-28 127.9 127 63.0
Cpa.g.sc64.17 Carica papaya HOM05D004388 ORTHO05D005106 7.4e-28 127.5 126 63.5
Duzib052G1120 Durio zibethinus HOM05D004388 ORTHO05D005106 7.4e-28 127.5 123 59.3
Gohir.A01G181900 Gossypium hirsutum HOM05D004388 ORTHO05D005106 7.4e-28 127.5 121 60.3
BcaC07g40816 Brassica carinata HOM05D004388 ORTHO05D005106 1.3e-27 126.7 127 61.4
C08p38090 Brassica napus HOM05D004388 ORTHO05D005106 1.3e-27 126.7 127 61.4
BolC8t51384H Brassica oleracea HOM05D004388 ORTHO05D005106 1.3e-27 126.7 127 61.4
PSO541G0781 Papaver somniferum HOM05D004388 ORTHO05D005106 1.3e-27 126.7 124 59.7
FAN20G1062 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.6e-27 126.3 103 68.0
PSO170G0356 Papaver somniferum HOM05D004388 ORTHO05D005106 2.1e-27 125.9 125 59.2
CAN.G322.84 Capsicum annuum HOM05D004388 ORTHO05D005106 2.8e-27 125.6 125 59.2
THA.LOC104803691 Tarenaya hassleriana HOM05D004388 ORTHO05D005106 2.8e-27 125.6 126 57.9
Thhalv10001257m.g Eutrema salsugineum HOM05D004388 ORTHO05D005106 3.7e-27 125.2 127 61.4
Peaxi162Scf00684g00563 Petunia axillaris HOM05D004388 ORTHO05D005106 3.7e-27 125.2 126 61.1
MD05G1072400 Malus domestica HOM05D004388 ORTHO05D005106 4.8e-27 124.8 126 57.1
Peaxi162Scf00016g01338 Petunia axillaris HOM05D004388 ORTHO05D005106 4.8e-27 124.8 120 60.8
A09p55160 Brassica napus HOM05D004388 ORTHO05D005106 6.2e-27 124.4 127 60.6
BraA09t40924Z Brassica rapa HOM05D004388 ORTHO05D005106 6.2e-27 124.4 127 60.6
Aa31LG5G9370 Aethionema arabicum HOM05D004388 ORTHO05D005106 1.4e-26 123.2 127 61.4
AL4G19340 Arabidopsis lyrata HOM05D004388 ORTHO05D005106 1.4e-26 123.2 127 61.4
AT2G26500 Arabidopsis thaliana HOM05D004388 ORTHO05D005106 1.4e-26 123.2 127 61.4
Carub.0004s0666 Capsella rubella HOM05D004388 ORTHO05D005106 1.4e-26 123.2 127 61.4
Duzib248G1645 Durio zibethinus HOM05D004388 ORTHO05D005106 1.4e-26 123.2 123 57.7
Ca_12477_v3 Cicer arietinum L. HOM05D004388 ORTHO05D005106 2.4e-26 122.5 124 59.7
Gorai.005G264100 Gossypium raimondii HOM05D004388 ORTHO05D005106 2.4e-26 122.5 127 59.8
CANSAT25G3863 Cannabis sativa HOM05D004388 ORTHO05D005106 3.1e-26 122.1 128 59.4
Duzib248G0127 Durio zibethinus HOM05D004388 ORTHO05D005106 4.0e-26 121.7 123 58.5
Sopen10g022090 Solanum pennellii HOM05D004388 ORTHO05D005106 4.0e-26 121.7 125 57.6
MSTRG.20123 Avicennia marina HOM05D004388 ORTHO05D005106 5.3e-26 121.3 124 60.5
COL.COLO4_17768 Corchorus olitorius HOM05D004388 ORTHO05D005106 5.3e-26 121.3 123 58.5
Medtr1g034260 Medicago truncatula HOM05D004388 ORTHO05D005106 5.3e-26 121.3 125 60.0
ECA236G2461 Erigeron canadensis HOM05D004388 ORTHO05D005106 6.9e-26 120.9 125 60.8
Gohir.A03G214500 Gossypium hirsutum HOM05D004388 ORTHO05D005106 6.9e-26 120.9 127 59.1
Gohir.D02G236000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 6.9e-26 120.9 127 59.1
Migut.B00292 Erythranthe guttata HOM05D004388 ORTHO05D005106 9.0e-26 120.6 121 54.5
Aqoxy6G00936 Aquilegia oxysepala HOM05D004388 ORTHO05D005106 1.2e-25 120.2 127 56.7
CARHR118500 Cardamine hirsuta HOM05D004388 ORTHO05D005106 1.2e-25 120.2 128 59.4
Potri.004G147300 Populus trichocarpa HOM05D004388 ORTHO05D005106 1.5e-25 119.8 123 57.7
DCAR_001610 Daucus carota HOM05D004388 ORTHO05D005106 2.0e-25 119.4 124 57.3
PGSC0003DMG400006208 Solanum tuberosum HOM05D004388 ORTHO05D005106 2.0e-25 119.4 125 57.6
Lalb_Chr01g0003011 Lupinus albus HOM05D004388 ORTHO05D005106 2.6e-25 119.0 111 59.5
SalBow6G5992 Salvia bowleyana HOM05D004388 ORTHO05D005106 4.5e-25 118.2 123 58.5
Nitab4.5_0001401g0180 Nicotiana tabacum HOM05D004388 ORTHO05D005106 1.0e-24 117.1 122 56.6
DCAR_000094 Daucus carota HOM05D004388 ORTHO05D005106 1.3e-24 116.7 113 60.2
DCAR_029046 Daucus carota HOM05D004388 ORTHO05D005106 1.3e-24 116.7 113 60.2
Nitab4.5_0008194g0060 Nicotiana tabacum HOM05D004388 ORTHO05D005106 2.2e-24 115.9 122 55.7
Hma1.2p1_0584F.1_g183220 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 3.8e-24 115.2 127 58.3
Sed0011034 Sechium edule HOM05D004388 ORTHO05D005106 3.8e-24 115.2 126 55.6
MD10G1086700 Malus domestica HOM05D004388 ORTHO05D005106 6.5e-24 114.4 116 56.9
Lsat_1_v5_gn_7_88020 Lactuca sativa HOM05D004388 ORTHO05D005106 8.4e-24 114.0 125 59.2
PGR042G3241 Punica granatum HOM05D004388 ORTHO05D005106 8.4e-24 114.0 118 61.0
Lalb_Chr10g0095391 Lupinus albus HOM05D004388 ORTHO05D005106 1.1e-23 113.6 115 59.1
Sopen01g051240 Solanum pennellii HOM05D004388 ORTHO05D005106 1.1e-23 113.6 125 55.2
PGSC0003DMG402025831 Solanum tuberosum HOM05D004388 ORTHO05D005106 1.9e-23 112.8 125 55.2
unitig_0.g849 Utricularia gibba HOM05D004388 ORTHO05D005106 3.2e-23 112.1 121 57.0
ATR0733G197 Amborella trichopoda HOM05D004388 ORTHO05D005106 4.2e-23 111.7 120 55.8
Solyc01g109040.4 Solanum lycopersicum HOM05D004388 ORTHO05D005106 4.2e-23 111.7 125 54.4
HanXRQChr04g0128391 Helianthus annuus HOM05D004388 ORTHO05D005106 5.5e-23 111.3 112 56.2
HanXRQChr16g0506081 Helianthus annuus HOM05D004388 ORTHO05D005106 1.2e-22 110.2 124 55.6
unitig_744.g24243 Utricularia gibba HOM05D004388 ORTHO05D005106 6.0e-22 107.8 122 53.3
Actinidia00479 Actinidia chinensis HOM05D000395 ORTHO05D005106 1.0e-21 107.1 126 52.4
unitig_21.g20762 Utricularia gibba HOM05D004388 ORTHO05D005106 1.0e-21 107.1 123 53.7
Psat6g097040 Pisum sativum HOM05D004388 ORTHO05D005106 2.3e-21 105.9 132 55.3
Eucgr.I01216 Eucalyptus grandis HOM05D004388 ORTHO05D005106 3.0e-21 105.5 108 56.5
arahy.Tifrunner.gnm1.ann1.RG9LRA Arachis hypogaea HOM05D004388 ORTHO05D005106 1.5e-20 103.2 128 51.6
Potri.002G130000 Populus trichocarpa HOM05D004388 ORTHO05D005106 4.3e-20 101.7 105 57.1
arahy.Tifrunner.gnm1.ann1.ISKM3Z Arachis hypogaea HOM05D004388 ORTHO05D005106 7.4e-20 100.9 127 49.6
SGA_v2.0_scaffold58G20597 Striga asiatica HOM05D004388 ORTHO05D005106 9.7e-20 100.5 124 48.4
HPP92_017776 Vanilla planifolia HOM05D004388 ORTHO05D005106 1.3e-19 100.1 113 54.0
Os03g0765900 Oryza sativa ssp. japonica HOM05D004388 ORTHO05D005106 4.5e-17 91.7 125 46.4
Pp3c5_10730 Physcomitrium patens HOM05D004388 ORTHO05D005106 4.5e-17 91.7 127 43.3
Rhsim05G0079000 Rhododendron simsii HOM05D004388 ORTHO05D005106 1.3e-16 90.1 129 50.4
Zm00001eb058590 Zea mays HOM05D004388 ORTHO05D005106 1.7e-16 89.7 117 47.9
Pp3c6_20300 Physcomitrium patens HOM05D004388 ORTHO05D005106 2.9e-16 89.0 125 41.6
Zm00001eb214080 Zea mays HOM05D004388 ORTHO05D005106 1.4e-15 86.7 124 46.0
SMO361G0239 Selaginella moellendorffii HOM05D004388 ORTHO05D005106 1.9e-15 86.3 126 44.4
AagrBONN_evm.TU.Sc2ySwM_228.5818 Anthoceros agrestis HOM05D004388 ORTHO05D005106 1.6e-14 83.2 132 43.2
TPR.G40836 Trifolium pratense HOM05D004388 ORTHO05D005106 1.6e-14 83.2 77 63.6
BcaB08g35304 Brassica carinata HOM05D004388 ORTHO05D005106 5.1e-13 78.2 51 80.4
CDE01G0191 Ceratophyllum demersum HOM05D004388 ORTHO05D005106 8.8e-13 77.4 58 72.4
Oeu010570.1 Olea europaea HOM05D000395 ORTHO05D000088 2.5e-12 75.9 78 57.7
CBR_g48936 Chara braunii HOM05D004388 ORTHO05D005106 8.2e-11 70.9 120 41.7
GSVIVG01031853001 Vitis vinifera HOM05D008110 ORTHO05D005106 1.8e-10 69.7 73 56.2
Mapoly0043s0110 Marchantia polymorpha HOM05D004388 ORTHO05D005106 3.1e-10 68.9 125 38.4
Psat4g068600 Pisum sativum HOM05D004388 ORTHO05D005106 1.5e-09 66.6 107 46.7
Psat3g122680 Pisum sativum HOM05D004388 ORTHO05D005106 4.7e-06 55.1 110 39.1
SEGI_27588 Sequoiadendron giganteum HOM05D004388 ORTHO05D005106 6.1e-06 54.7 127 37.8


User provided reference genes

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