Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018365 Carpinus fangiana HOM05D003899 ORTHO05D003655 8.7e-75 284.3 235 100.0
Haze_17704 Corylus avellana HOM05D003899 ORTHO05D003655 2.5e-61 239.6 231 81.0
CiPaw.16G017800 Carya illinoinensis HOM05D003899 ORTHO05D003655 9.1e-32 141.4 128 58.6
MD05G1014900 Malus domestica HOM05D003899 ORTHO05D003655 2.7e-31 139.8 100 69.0
Dinv24330 Davidia involucrata HOM05D003899 ORTHO05D003655 7.7e-31 138.3 121 55.4
Prupe.8G018800 Prunus persica HOM05D003899 ORTHO05D003655 1.0e-30 137.9 115 63.5
FvH4_2g14670 Fragaria vesca HOM05D003899 ORTHO05D003655 5.0e-30 135.6 84 77.4
FAN24G0119 Fragaria x ananassa HOM05D003899 ORTHO05D003655 5.0e-30 135.6 84 77.4
CANSAT25G0207 Cannabis sativa HOM05D003899 ORTHO05D003655 1.5e-29 134.0 126 57.9
FAN20G0153 Fragaria x ananassa HOM05D003899 ORTHO05D003655 5.5e-29 132.1 84 75.0
FAN15G3500 Fragaria x ananassa HOM05D003899 ORTHO05D003655 2.7e-28 129.8 84 75.0
RcHm_v2.0_Chr6g0277141 Rosa chinensis HOM05D003899 ORTHO05D003655 2.3e-27 126.7 86 72.1
Glyma.14G121800 Glycine max HOM05D003899 ORTHO05D003655 3.0e-27 126.3 125 56.0
Thecc.08G144600 Theobroma cacao HOM05D003899 ORTHO05D003655 5.2e-27 125.6 126 54.0
QL02p025320 Quercus lobata HOM05D003899 ORTHO05D003655 2.0e-26 123.6 110 59.1
Manes.12G153900 Manihot esculenta HOM05D003899 ORTHO05D003655 3.4e-26 122.9 125 52.0
Gohir.A02G066500 Gossypium hirsutum HOM05D003899 ORTHO05D003655 4.4e-26 122.5 127 54.3
arahy.Tifrunner.gnm1.ann1.UE47UQ Arachis hypogaea HOM05D003899 ORTHO05D003655 1.7e-25 120.6 112 56.2
Psat6g039960 Pisum sativum HOM05D003899 ORTHO05D003655 2.2e-25 120.2 123 50.4
TWI32G0122 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 2.2e-25 120.2 119 49.6
Potri.007G108100 Populus trichocarpa HOM05D003899 ORTHO05D003655 6.3e-25 118.6 125 49.6
Medtr1g029140 Medicago truncatula HOM05D003899 ORTHO05D003655 1.1e-24 117.9 125 51.2
Potri.005G060700 Populus trichocarpa HOM05D003899 ORTHO05D003655 1.1e-24 117.9 125 48.8
Actinidia06640 Actinidia chinensis HOM05D003899 ORTHO05D003655 1.4e-24 117.5 121 52.1
Atru.chr4.839 Acer truncatum HOM05D003899 ORTHO05D003655 3.1e-24 116.3 126 48.4
Oeu030532.1 Olea europaea HOM05D003899 ORTHO05D003655 9.2e-24 114.8 90 61.1
Thecc.01G128000 Theobroma cacao HOM05D003899 ORTHO05D003655 9.2e-24 114.8 125 48.8
Ciclev10003780m.g Citrus clementina HOM05D003899 ORTHO05D003655 1.6e-23 114.0 123 50.4
Gorai.005G081600 Gossypium raimondii HOM05D003899 ORTHO05D003655 3.5e-23 112.8 129 52.7
Duzib041G0166 Durio zibethinus HOM05D003899 ORTHO05D003655 7.7e-23 111.7 127 52.0
Rhsim10G0136200 Rhododendron simsii HOM05D003899 ORTHO05D003655 1.0e-22 111.3 117 50.4
RhsimUnG0132700 Rhododendron simsii HOM05D003899 ORTHO05D003655 1.0e-22 111.3 117 50.4
Lj1g0026176 Lotus japonicus HOM05D003899 ORTHO05D003655 1.3e-22 110.9 122 52.5
QL06p029227 Quercus lobata HOM05D003899 ORTHO05D003655 2.3e-22 110.2 124 49.2
MSTRG.1375 Avicennia marina HOM05D003899 ORTHO05D003655 2.9e-22 109.8 101 53.5
Gohir.A11G224804 Gossypium hirsutum HOM05D003899 ORTHO05D003655 6.6e-22 108.6 99 57.6
PSO017G4320 Papaver somniferum HOM05D003899 ORTHO05D003655 6.6e-22 108.6 116 50.0
A10p07750 Brassica napus HOM05D003899 ORTHO05D003655 1.1e-21 107.8 89 55.1
BolC6t35162H Brassica oleracea HOM05D003899 ORTHO05D003655 1.1e-21 107.8 89 55.1
BraSC36t46027Z Brassica rapa HOM05D003899 ORTHO05D003655 1.1e-21 107.8 89 55.1
Thhalv10012331m.g Eutrema salsugineum HOM05D003899 ORTHO05D003655 1.1e-21 107.8 89 55.1
Duzib264G1053 Durio zibethinus HOM05D003899 ORTHO05D003655 9.5e-21 104.8 121 45.5
THA.LOC104806849 Tarenaya hassleriana HOM05D003899 ORTHO05D003655 9.5e-21 104.8 89 56.2
Sed0026893 Sechium edule HOM05D003899 ORTHO05D003655 1.6e-20 104.0 118 49.2
Aqoxy3G00817 Aquilegia oxysepala HOM05D003899 ORTHO05D003655 2.1e-20 103.6 130 49.2
BcaB07g33974 Brassica carinata HOM05D003899 ORTHO05D003655 2.1e-20 103.6 89 52.8
Dinv41123 Davidia involucrata HOM05D000043 ORTHO05D002577 2.1e-20 103.6 82 58.5
DCAR_007049 Daucus carota HOM05D003899 ORTHO05D003655 2.8e-20 103.2 118 50.8
ClCG08G006450 Citrullus lanatus HOM05D000058 ORTHO05D000077 3.6e-20 102.8 111 48.6
TAR381G0487 Trochodendron aralioides HOM05D003899 ORTHO05D003655 3.6e-20 102.8 84 60.7
Ca_12820_v3 Cicer arietinum L. HOM05D003899 ORTHO05D003655 4.7e-20 102.4 128 44.5
Gohir.D11G228940 Gossypium hirsutum HOM05D003899 ORTHO05D003655 6.1e-20 102.1 90 57.8
Lalb_Chr25g0281721 Lupinus albus HOM05D003899 ORTHO05D003655 6.1e-20 102.1 116 51.7
Gorai.003G068900 Gossypium raimondii HOM05D003899 ORTHO05D003655 8.0e-20 101.7 90 56.7
HanXRQChr04g0125201 Helianthus annuus HOM05D003899 ORTHO05D003655 8.0e-20 101.7 111 54.1
Nn5g28623 Nelumbo nucifera HOM05D003899 ORTHO05D003655 1.8e-19 100.5 120 50.0
Dinv25809 Davidia involucrata HOM05D003899 ORTHO05D003655 2.3e-19 100.1 62 72.6
CiPaw.15G021500 Carya illinoinensis HOM05D003899 ORTHO05D003655 3.0e-19 99.8 82 62.2
Medtr1g008620 Medicago truncatula HOM05D003899 ORTHO05D003655 3.0e-19 99.8 96 53.1
MELO3C027328.2 Cucumis melo HOM05D003899 ORTHO05D003655 4.0e-19 99.4 94 54.3
MBI06_g43012_MAGBIO Magnolia biondii HOM05D003899 ORTHO05D003655 4.0e-19 99.4 124 50.0
Aqoxy5G02188 Aquilegia oxysepala HOM05D003899 ORTHO05D003655 5.2e-19 99.0 137 40.1
CsaV3_6G030980 Cucumis sativus L. HOM05D003899 ORTHO05D003655 5.2e-19 99.0 96 53.1
CARHR035480 Cardamine hirsuta HOM05D003899 ORTHO05D003655 6.8e-19 98.6 87 52.9
COL.COLO4_08943 Corchorus olitorius HOM05D003899 ORTHO05D003655 6.8e-19 98.6 110 51.8
PSO170G2020 Papaver somniferum HOM05D003899 ORTHO05D003655 6.8e-19 98.6 117 47.9
AL1G51910 Arabidopsis lyrata HOM05D003899 ORTHO05D003655 2.6e-18 96.7 89 50.6
Medtr1g008675 Medicago truncatula HOM05D003899 ORTHO05D003655 2.6e-18 96.7 101 46.5
CAN.G375.87 Capsicum annuum HOM05D003899 ORTHO05D003655 3.4e-18 96.3 91 51.6
BcaB03g16849 Brassica carinata HOM05D003899 ORTHO05D003655 4.4e-18 95.9 104 48.1
C06p00330 Brassica napus HOM05D003899 ORTHO05D003655 4.4e-18 95.9 89 51.7
AT1G43790 Arabidopsis thaliana HOM05D003899 ORTHO05D003655 5.7e-18 95.5 89 49.4
AUR62017911 Chenopodium quinoa HOM05D003899 ORTHO05D003655 5.7e-18 95.5 123 44.7
PGR044G0858 Punica granatum HOM05D003899 ORTHO05D003655 7.5e-18 95.1 74 64.9
EL10Ac6g15278 Beta vulgaris HOM05D003899 ORTHO05D003655 1.3e-17 94.4 102 47.1
Nn1g06205 Nelumbo nucifera HOM05D003899 ORTHO05D003655 2.2e-17 93.6 84 54.8
MD10G1014900 Malus domestica HOM05D003899 ORTHO05D003655 4.9e-17 92.4 83 57.8
QL02p025328 Quercus lobata HOM05D003899 ORTHO05D003655 4.9e-17 92.4 83 57.8
Manes.18G087500 Manihot esculenta HOM05D003899 ORTHO05D003655 6.4e-17 92.0 84 53.6
EL10Ac7g17632 Beta vulgaris HOM05D003899 ORTHO05D003655 8.3e-17 91.7 102 46.1
Gohir.D02G072400 Gossypium hirsutum HOM05D003899 ORTHO05D003655 8.3e-17 91.7 130 48.5
MELO3C023688.2 Cucumis melo HOM05D003899 ORTHO05D003655 1.4e-16 90.9 97 51.5
Psat6g033720 Pisum sativum HOM05D003899 ORTHO05D003655 1.4e-16 90.9 96 52.1
Sc02g0004420 Simmondsia chinensis HOM05D003899 ORTHO05D003655 1.8e-16 90.5 108 50.9
PGR044G1758 Punica granatum HOM05D003899 ORTHO05D003655 3.2e-16 89.7 134 44.8
Sp1g32910 Schrenkiella parvula HOM05D003899 ORTHO05D003655 3.2e-16 89.7 77 55.8
COL.COLO4_14024 Corchorus olitorius HOM05D003899 ORTHO05D003655 5.4e-16 89.0 100 49.0
BcaC08g42822 Brassica carinata HOM05D003899 ORTHO05D003655 7.0e-16 88.6 74 55.4
Cpa.g.sc49.66 Carica papaya HOM05D003899 ORTHO05D003655 7.0e-16 88.6 86 54.7
TWI60G1060 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 7.0e-16 88.6 86 55.8
ECA246G5022 Erigeron canadensis HOM05D003899 ORTHO05D003655 9.2e-16 88.2 96 47.9
SGA_v2.0_scaffold73G24343 Striga asiatica HOM05D003899 ORTHO05D003655 9.2e-16 88.2 97 47.4
Phvul.001G052300 Phaseolus vulgaris HOM05D003899 ORTHO05D003655 1.6e-15 87.4 137 40.9
Sed0020885 Sechium edule HOM05D003899 ORTHO05D003655 2.7e-15 86.7 118 48.3
AUR62043709 Chenopodium quinoa HOM05D003899 ORTHO05D003655 3.5e-15 86.3 110 43.6
Duzib093G0910 Durio zibethinus HOM05D003899 ORTHO05D003655 4.6e-15 85.9 87 52.9
Thhalv10012251m.g Eutrema salsugineum HOM05D003899 ORTHO05D003655 4.6e-15 85.9 114 43.9
Nn5g28622 Nelumbo nucifera HOM05D003899 ORTHO05D003655 5.9e-15 85.5 82 52.4
Sp1g41920 Schrenkiella parvula HOM05D003899 ORTHO05D003655 5.9e-15 85.5 98 45.9
Carub.0001s3477 Capsella rubella HOM05D003899 ORTHO05D003655 7.8e-15 85.1 89 46.1
TPR.G12083 Trifolium pratense HOM05D003899 ORTHO05D003655 7.8e-15 85.1 80 51.2
TPR.G33315 Trifolium pratense HOM05D003899 ORTHO05D003655 7.8e-15 85.1 66 57.6
Dinv03732 Davidia involucrata HOM05D000043 ORTHO05D002577 1.3e-14 84.3 88 46.6
Migut.N03236 Erythranthe guttata HOM05D003899 ORTHO05D003655 1.3e-14 84.3 122 46.7
CSS0000461 Camellia sinensis var. sinensis HOM05D003899 ORTHO05D003655 1.7e-14 84.0 72 62.5
Glyma.14G122000 Glycine max HOM05D003899 ORTHO05D003655 1.7e-14 84.0 69 65.2
Phvul.001G073300 Phaseolus vulgaris HOM05D003899 ORTHO05D003655 1.7e-14 84.0 57 66.7
Psat6g033800 Pisum sativum HOM05D003899 ORTHO05D003655 1.7e-14 84.0 97 47.4
Lsat_1_v5_gn_5_108780 Lactuca sativa HOM05D003899 ORTHO05D003655 3.0e-14 83.2 91 48.4
Lsat_1_v5_gn_9_107661 Lactuca sativa HOM05D003899 ORTHO05D003655 3.9e-14 82.8 91 47.3
AUR62003600 Chenopodium quinoa HOM05D003899 ORTHO05D003655 5.0e-14 82.4 119 41.2
Lj2C604T4 Lonicera japonica HOM05D003899 ORTHO05D003655 8.6e-14 81.6 82 48.8
Carub.0001s4477 Capsella rubella HOM05D003899 ORTHO05D003655 1.1e-13 81.3 104 43.3
Lj2C604T3 Lonicera japonica HOM05D003899 ORTHO05D003655 1.5e-13 80.9 85 45.9
Sabra07G0088500 Salix brachista HOM05D000850 ORTHO05D000266 3.3e-13 79.7 84 50.0
AL1G64600 Arabidopsis lyrata HOM05D003899 ORTHO05D003655 5.6e-13 79.0 106 42.5
CARHR046070 Cardamine hirsuta HOM05D003899 ORTHO05D003655 5.6e-13 79.0 106 41.5
Lsat_1_v5_gn_5_108760 Lactuca sativa HOM05D003899 ORTHO05D003655 7.3e-13 78.6 90 46.7
PGSC0003DMG400027629 Solanum tuberosum HOM05D003899 ORTHO05D003655 7.3e-13 78.6 107 41.1
HanXRQChr05g0161081 Helianthus annuus HOM05D003899 ORTHO05D003655 1.2e-12 77.8 94 42.6
CANSAT11G1227 Cannabis sativa HOM05D003899 ORTHO05D003655 2.1e-12 77.0 74 51.4
ClCG09G009790 Citrullus lanatus HOM05D003899 ORTHO05D003655 2.1e-12 77.0 102 45.1
CsaV3_7G024950 Cucumis sativus L. HOM05D000219 ORTHO05D000226 2.8e-12 76.6 102 44.1
Cpa.g.sc42.130 Carica papaya HOM05D003899 ORTHO05D003655 3.6e-12 76.3 85 48.2
AUR62026786 Chenopodium quinoa HOM05D003899 ORTHO05D003655 3.6e-12 76.3 118 37.3
DCAR_001362 Daucus carota HOM05D003899 ORTHO05D003655 3.6e-12 76.3 80 53.8
Ah.05g167520 Amaranthus hybridus HOM05D000219 ORTHO05D000226 6.2e-12 75.5 103 45.6
Nitab4.5_0002974g0030 Nicotiana tabacum HOM05D003899 ORTHO05D003655 8.0e-12 75.1 120 43.3
CSS0023777 Camellia sinensis var. sinensis HOM05D003899 ORTHO05D003655 1.0e-11 74.7 83 48.2
Nitab4.5_0015327g0010 Nicotiana tabacum HOM05D003899 ORTHO05D003655 1.0e-11 74.7 127 40.2
HanXRQChr08g0232541 Helianthus annuus HOM05D003899 ORTHO05D003655 3.1e-11 73.2 88 46.6
AT5G48920 Arabidopsis thaliana HOM05D003899 ORTHO05D003655 4.0e-11 72.8 113 38.9
C07p00500 Brassica napus HOM05D003899 ORTHO05D003655 4.0e-11 72.8 79 45.6
AUR62013490 Chenopodium quinoa HOM05D003899 ORTHO05D003655 4.0e-11 72.8 118 39.0
Hma1.2p1_0528F.1_g173010 Hydrangea macrophylla HOM05D003899 ORTHO05D003655 4.0e-11 72.8 75 49.3
VMungo0647G2071 Vigna mungo HOM05D003899 ORTHO05D003655 5.2e-11 72.4 60 53.3
Nn1g06203 Nelumbo nucifera HOM05D003899 ORTHO05D003655 6.8e-11 72.0 115 43.5
Peaxi162Scf00263g00033 Petunia axillaris HOM05D003899 ORTHO05D003655 8.9e-11 71.6 113 41.6
ECA246G3613 Erigeron canadensis HOM05D003899 ORTHO05D003655 1.5e-10 70.9 105 42.9
PSO126G0001 Papaver somniferum HOM05D003899 ORTHO05D003655 1.5e-10 70.9 74 51.4
BcaC06g36741 Brassica carinata HOM05D003899 ORTHO05D003655 2.0e-10 70.5 79 44.3
BolC7t40496H Brassica oleracea HOM05D003899 ORTHO05D003655 2.0e-10 70.5 79 44.3
ECA238G1798 Erigeron canadensis HOM05D003899 ORTHO05D003655 9.8e-10 68.2 91 44.0
PGR002G0009 Punica granatum HOM05D003899 ORTHO05D003655 9.8e-10 68.2 45 71.1
Lalb_Chr23g0271351 Lupinus albus HOM05D003899 ORTHO05D003655 1.3e-09 67.8 82 41.5
Solyc03g033290.1 Solanum lycopersicum HOM05D003899 ORTHO05D003655 1.7e-09 67.4 89 46.1
Nitab4.5_0001140g0230 Nicotiana tabacum HOM05D003899 ORTHO05D003655 2.2e-09 67.0 83 44.6
Cfa013717 Carpinus fangiana HOM05D009119 ORTHO05D003655 2.9e-09 66.6 110 35.5
THA.LOC104800071 Tarenaya hassleriana HOM05D003899 ORTHO05D003655 2.9e-09 66.6 85 43.5
Solyc07g045590.1 Solanum lycopersicum HOM05D003899 ORTHO05D003655 3.7e-09 66.2 100 40.0
TWI79G1413 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 4.9e-09 65.9 76 42.1
Nitab4.5_0004770g0030 Nicotiana tabacum HOM05D003899 ORTHO05D003655 6.4e-09 65.5 122 38.5
PGSC0003DMG400030777 Solanum tuberosum HOM05D003899 ORTHO05D003655 6.4e-09 65.5 96 42.7
PGR002G0007 Punica granatum HOM05D003899 ORTHO05D003655 8.3e-09 65.1 99 43.4
Sc16g0003890 Simmondsia chinensis HOM05D003899 ORTHO05D003655 8.3e-09 65.1 93 36.6
PGSC0003DMG400024810 Solanum tuberosum HOM05D003899 ORTHO05D003655 1.1e-08 64.7 94 41.5
BraA07t27814Z Brassica rapa HOM05D003899 ORTHO05D003655 1.9e-08 63.9 79 41.8
Nitab4.5_0008388g0020 Nicotiana tabacum HOM05D003899 ORTHO05D003655 1.9e-08 63.9 83 42.2
CAN.G1012.7 Capsicum annuum HOM05D003899 ORTHO05D003655 2.4e-08 63.5 81 40.7
PGSC0003DMG400024811 Solanum tuberosum HOM05D003899 ORTHO05D003655 3.2e-08 63.2 114 41.2
Nitab4.5_0000299g0020 Nicotiana tabacum HOM05D003899 ORTHO05D003655 4.1e-08 62.8 119 38.7
Atru.chr13.1710 Acer truncatum HOM05D003899 ORTHO05D003655 5.4e-08 62.4 88 43.2
COL.COLO4_11973 Corchorus olitorius HOM05D009119 ORTHO05D003655 5.4e-08 62.4 109 39.4
Haze_22364 Corylus avellana HOM05D009119 ORTHO05D003655 7.0e-08 62.0 101 35.6
CAN.G833.2 Capsicum annuum HOM05D003899 ORTHO05D003655 9.2e-08 61.6 77 45.5
Thecc.08G065300 Theobroma cacao HOM05D009119 ORTHO05D003655 1.2e-07 61.2 104 38.5
Actinidia15159 Actinidia chinensis HOM05D000043 ORTHO05D002577 1.6e-07 60.8 39 64.1
THA.LOC104827412 Tarenaya hassleriana HOM05D009119 ORTHO05D003655 2.7e-07 60.1 88 43.2
Solyc03g033280.1 Solanum lycopersicum HOM05D003899 ORTHO05D003655 7.8e-07 58.5 94 39.4
Potri.002G072000 Populus trichocarpa HOM05D003899 ORTHO05D003655 1.7e-06 57.4 87 40.2
PGSC0003DMG400030778 Solanum tuberosum HOM05D003899 ORTHO05D003655 6.6e-06 55.5 79 38.0
Migut.M00600 Erythranthe guttata HOM05D003899 ORTHO05D003655 8.6e-06 55.1 47 44.7


User provided reference genes

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