Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018352 Carpinus fangiana HOM05D006006 ORTHO05D007566 2.2e-207 725.3 351 100.0
Haze_17707 Corylus avellana HOM05D006006 ORTHO05D007566 5.1e-196 687.6 381 88.7
QL02p024995 Quercus lobata HOM05D006006 ORTHO05D007566 7.9e-173 610.5 353 84.1
CiPaw.15G020800 Carya illinoinensis HOM05D006006 ORTHO05D007566 5.9e-168 594.3 345 82.3
CiPaw.16G016900 Carya illinoinensis HOM05D006006 ORTHO05D007566 1.0e-167 593.6 345 82.6
Thecc.08G145800 Theobroma cacao HOM05D006006 ORTHO05D007566 1.7e-162 576.2 346 80.6
COL.COLO4_04848 Corchorus olitorius HOM05D006006 ORTHO05D007566 1.4e-161 573.2 346 80.1
Duzib093G0547 Durio zibethinus HOM05D006006 ORTHO05D007566 2.6e-160 568.9 346 78.9
GSVIVG01010048001 Vitis vinifera HOM05D006006 ORTHO05D007566 9.4e-158 560.5 339 78.8
Prupe.8G021400 Prunus persica HOM05D006006 ORTHO05D007566 4.7e-157 558.1 346 77.7
Cpa.g.sc49.54 Carica papaya HOM05D006006 ORTHO05D007566 1.2e-155 553.5 347 76.9
MD05G1017500 Malus domestica HOM05D006006 ORTHO05D007566 1.1e-153 547.0 351 75.2
Gorai.005G081300 Gossypium raimondii HOM05D006006 ORTHO05D007566 1.8e-153 546.2 346 76.6
MD10G1017500 Malus domestica HOM05D006006 ORTHO05D007566 3.1e-153 545.4 351 75.5
Eucgr.F04261 Eucalyptus grandis HOM05D006006 ORTHO05D007566 5.3e-153 544.7 345 75.1
THA.LOC104813696 Tarenaya hassleriana HOM05D006006 ORTHO05D007566 5.3e-153 544.7 345 76.8
Gohir.D02G072100 Gossypium hirsutum HOM05D006006 ORTHO05D007566 9.1e-153 543.9 346 76.0
Ciclev10001700m.g Citrus clementina HOM05D006006 ORTHO05D007566 1.2e-152 543.5 346 75.1
TAR381G0495 Trochodendron aralioides HOM05D006006 ORTHO05D007566 2.7e-152 542.3 345 75.1
Lj7A365T41 Lonicera japonica HOM05D006006 ORTHO05D007566 1.0e-151 540.4 345 75.4
CSS0049727 Camellia sinensis var. sinensis HOM05D006006 ORTHO05D007566 1.3e-151 540.0 345 76.5
Gohir.A02G066200 Gossypium hirsutum HOM05D006006 ORTHO05D007566 1.7e-151 539.7 346 75.7
Sabra02G0056100 Salix brachista HOM05D006006 ORTHO05D007566 1.7e-151 539.7 333 77.8
Nn1g06190 Nelumbo nucifera HOM05D006006 ORTHO05D007566 1.5e-150 536.6 336 76.8
Potri.002G071300 Populus trichocarpa HOM05D006006 ORTHO05D007566 2.5e-150 535.8 333 77.5
TWI60G1394 Tripterygium wilfordii HOM05D006006 ORTHO05D007566 2.5e-150 535.8 345 75.1
CSS0044653 Camellia sinensis var. sinensis HOM05D006006 ORTHO05D007566 4.2e-150 535.0 345 75.7
Solyc06g060460.3 Solanum lycopersicum HOM05D006006 ORTHO05D007566 1.6e-149 533.1 345 75.7
PGSC0003DMG400017575 Solanum tuberosum HOM05D006006 ORTHO05D007566 2.1e-149 532.7 344 76.2
CANSAT25G3881 Cannabis sativa HOM05D006006 ORTHO05D007566 4.7e-149 531.6 345 72.5
Sopen06g020580 Solanum pennellii HOM05D006006 ORTHO05D007566 4.7e-149 531.6 345 75.4
Gorai.013G105300 Gossypium raimondii HOM05D006006 ORTHO05D007566 6.1e-149 531.2 346 74.6
TWI34G1885 Tripterygium wilfordii HOM05D006006 ORTHO05D007566 6.1e-149 531.2 341 76.0
Atru.chr13.1712 Acer truncatum HOM05D006006 ORTHO05D007566 8.0e-149 530.8 344 74.1
Gohir.D03G061500 Gossypium hirsutum HOM05D006006 ORTHO05D007566 1.0e-148 530.4 346 74.9
Nitab4.5_0000633g0110 Nicotiana tabacum HOM05D006006 ORTHO05D007566 1.0e-148 530.4 344 76.2
PGR042G3502 Punica granatum HOM05D006006 ORTHO05D007566 1.0e-148 530.4 339 76.4
RcHm_v2.0_Chr6g0276791 Rosa chinensis HOM05D006006 ORTHO05D007566 1.4e-148 530.0 347 74.1
Manes.02G175900 Manihot esculenta HOM05D006006 ORTHO05D007566 1.8e-148 529.6 335 75.5
ClCG09G009860 Citrullus lanatus HOM05D006006 ORTHO05D007566 8.8e-148 527.3 346 73.4
FvH4_2g14460 Fragaria vesca HOM05D006006 ORTHO05D007566 4.4e-147 525.0 345 74.5
CAN.G62.45 Capsicum annuum HOM05D006006 ORTHO05D007566 7.5e-147 524.2 346 75.7
Nn5g28652 Nelumbo nucifera HOM05D006006 ORTHO05D007566 9.8e-147 523.9 336 74.4
Aqoxy6G00385 Aquilegia oxysepala HOM05D006006 ORTHO05D007566 1.3e-146 523.5 345 72.8
Glyma.13G039000 Glycine max HOM05D006006 ORTHO05D007566 1.7e-146 523.1 347 72.3
CsaV3_7G024870 Cucumis sativus L. HOM05D006006 ORTHO05D007566 2.2e-146 522.7 346 73.4
FAN24G1565 Fragaria x ananassa HOM05D006006 ORTHO05D007566 4.8e-146 521.5 345 73.9
MBI03_g11319_MAGBIO Magnolia biondii HOM05D006006 ORTHO05D007566 6.3e-146 521.2 343 72.3
Thhalv10008107m.g Eutrema salsugineum HOM05D006006 ORTHO05D007566 8.3e-146 520.8 346 73.4
Lalb_Chr04g0263651 Lupinus albus HOM05D006006 ORTHO05D007566 8.3e-146 520.8 347 73.8
Glyma.14G123000 Glycine max HOM05D006006 ORTHO05D007566 1.4e-145 520.0 347 71.2
Oeu051259.1 Olea europaea HOM05D006006 ORTHO05D007566 1.4e-145 520.0 343 75.5
FAN15G3392 Fragaria x ananassa HOM05D006006 ORTHO05D007566 7.0e-145 517.7 345 73.3
FAN27G0920 Fragaria x ananassa HOM05D006006 ORTHO05D007566 4.5e-144 515.0 345 72.8
DCAR_008158 Daucus carota HOM05D006006 ORTHO05D007566 5.9e-144 514.6 335 71.9
Sp1g18920 Schrenkiella parvula HOM05D006006 ORTHO05D007566 1.0e-143 513.8 347 72.3
Phvul.001G072900 Phaseolus vulgaris HOM05D006006 ORTHO05D007566 2.9e-143 512.3 346 71.7
Carub.0001s2078 Capsella rubella HOM05D006006 ORTHO05D007566 1.9e-142 509.6 348 72.1
Oeu014478.2 Olea europaea HOM05D006006 ORTHO05D007566 2.5e-142 509.2 362 71.0
PSO675G8728 Papaver somniferum HOM05D006006 ORTHO05D007566 7.2e-142 507.7 341 73.0
CARHR021760 Cardamine hirsuta HOM05D006006 ORTHO05D007566 1.6e-141 506.5 350 73.4
PSO541G2188 Papaver somniferum HOM05D006006 ORTHO05D007566 2.1e-141 506.1 341 73.0
Aa31LG7G5530 Aethionema arabicum HOM05D006006 ORTHO05D007566 2.3e-140 502.7 347 71.8
AT1G21370 Arabidopsis thaliana HOM05D006006 ORTHO05D007566 3.0e-140 502.3 348 71.8
FAN20G0686 Fragaria x ananassa HOM05D006006 ORTHO05D007566 4.0e-140 501.9 376 67.0
Lj1g0023019 Lotus japonicus HOM05D006006 ORTHO05D007566 5.2e-140 501.5 350 71.7
Lj4A692T31 Lonicera japonica HOM05D006006 ORTHO05D007566 4.4e-139 498.4 345 69.6
C05p20260 Brassica napus HOM05D006006 ORTHO05D007566 9.8e-139 497.3 355 69.9
BolC5t30719H Brassica oleracea HOM05D006006 ORTHO05D007566 9.8e-139 497.3 355 69.9
HanXRQChr04g0109001 Helianthus annuus HOM05D006006 ORTHO05D007566 1.3e-138 496.9 348 70.4
BcaB07g32125 Brassica carinata HOM05D006006 ORTHO05D007566 1.7e-138 496.5 334 72.5
BraA06t24839Z Brassica rapa HOM05D006006 ORTHO05D007566 1.7e-138 496.5 354 69.8
MELO3C023695.2 Cucumis melo HOM05D006006 ORTHO05D007566 1.7e-138 496.5 405 62.7
BcaC05g26044 Brassica carinata HOM05D006006 ORTHO05D007566 2.2e-138 496.1 355 69.9
Sed0017044 Sechium edule HOM05D006006 ORTHO05D007566 4.9e-138 495.0 338 71.3
Ah.01g005030 Amaranthus hybridus HOM05D006006 ORTHO05D007566 6.3e-138 494.6 345 70.4
A06p17420 Brassica napus HOM05D006006 ORTHO05D007566 8.3e-138 494.2 352 69.6
Cc10_g14250 Coffea canephora HOM05D006006 ORTHO05D007566 1.1e-137 493.8 320 74.7
MSTRG.24200 Avicennia marina HOM05D006006 ORTHO05D007566 1.4e-137 493.4 343 70.3
arahy.Tifrunner.gnm1.ann1.D9Y8GI Arachis hypogaea HOM05D006006 ORTHO05D007566 2.0e-136 489.6 351 67.0
VMungo0647G2124 Vigna mungo HOM05D006006 ORTHO05D007566 1.3e-135 486.9 329 71.7
arahy.Tifrunner.gnm1.ann1.T5RWDG Arachis hypogaea HOM05D006006 ORTHO05D007566 2.3e-135 486.1 351 66.4
Medtr1g029000 Medicago truncatula HOM05D006006 ORTHO05D007566 2.3e-135 486.1 351 69.5
EL10Ac9g20647 Beta vulgaris HOM05D006006 ORTHO05D007566 5.0e-135 485.0 341 69.5
Actinidia15154 Actinidia chinensis HOM05D006006 ORTHO05D007566 1.5e-134 483.4 282 82.6
HanXRQChr08g0217661 Helianthus annuus HOM05D006006 ORTHO05D007566 3.3e-134 482.3 355 69.0
ATR1136G139 Amborella trichopoda HOM05D006006 ORTHO05D007566 9.5e-134 480.7 341 69.2
Lsat_1_v5_gn_1_8980 Lactuca sativa HOM05D006006 ORTHO05D007566 2.8e-133 479.2 290 78.6
AL1G34470 Arabidopsis lyrata HOM05D006006 ORTHO05D007566 3.6e-133 478.8 301 76.4
TPR.G33300 Trifolium pratense HOM05D006006 ORTHO05D007566 1.2e-131 473.8 350 67.7
Os04g0438500 Oryza sativa ssp. japonica HOM05D006006 ORTHO05D007566 1.7e-130 469.9 345 66.7
Psat0s5561g0040 Pisum sativum HOM05D006006 ORTHO05D007566 2.9e-130 469.2 340 67.4
unitig_21.g20180 Utricularia gibba HOM05D006006 ORTHO05D007566 4.9e-130 468.4 343 66.5
HPP92_004629 Vanilla planifolia HOM05D006006 ORTHO05D007566 4.9e-130 468.4 346 65.3
BcaB03g12819 Brassica carinata HOM05D006006 ORTHO05D007566 6.4e-130 468.0 348 67.5
Ca_12665_v3 Cicer arietinum L. HOM05D006006 ORTHO05D007566 8.3e-130 467.6 347 67.1
Migut.N03230 Erythranthe guttata HOM05D006006 ORTHO05D007566 1.4e-129 466.8 339 68.7
Zm00001eb422860 Zea mays HOM05D006006 ORTHO05D007566 3.5e-128 462.2 345 64.9
C08p20770 Brassica napus HOM05D006006 ORTHO05D007566 6.0e-128 461.5 322 70.8
unitig_744.g24565 Utricularia gibba HOM05D006006 ORTHO05D007566 1.0e-127 460.7 347 65.1
SHI09110 Sapria himalayana HOM05D006006 ORTHO05D007566 1.2e-117 427.2 334 64.4
BolC8t49716H Brassica oleracea HOM05D006006 ORTHO05D007566 2.8e-117 426.0 323 65.3
ECA247G2705 Erigeron canadensis HOM05D006006 ORTHO05D007566 3.7e-114 415.6 245 79.2
Peaxi162Scf00051g00516 Petunia axillaris HOM05D006006 ORTHO05D007566 2.4e-113 412.9 232 82.3
Dinv25817 Davidia involucrata HOM05D006006 ORTHO05D007566 6.0e-112 408.3 253 79.8
CDE06G2625 Ceratophyllum demersum HOM05D006006 ORTHO05D007566 3.9e-111 405.6 249 73.5
CDE08G1689 Ceratophyllum demersum HOM05D006006 ORTHO05D007566 1.9e-110 403.3 249 73.5
SEGI_37970 Sequoiadendron giganteum HOM05D006006 ORTHO05D007566 2.7e-104 382.9 330 60.3
Mapoly0050s0105 Marchantia polymorpha HOM05D006006 ORTHO05D007566 3.5e-104 382.5 302 61.3
BcaC07g39093 Brassica carinata HOM05D006006 ORTHO05D007566 1.3e-101 374.0 323 61.3
Pp3c25_12020 Physcomitrium patens HOM05D006006 ORTHO05D007566 2.1e-101 373.2 334 57.8
Nitab4.5_0008475g0010 Nicotiana tabacum HOM05D006006 ORTHO05D007566 8.7e-95 351.3 241 74.7
C06p40100 Brassica napus HOM05D006006 ORTHO05D007566 2.5e-94 349.7 232 72.4
Gohir.A02G108509 Gossypium hirsutum HOM05D006006 ORTHO05D007566 4.3e-94 349.0 243 70.8
Gohir.A02G108508 Gossypium hirsutum HOM05D006006 ORTHO05D007566 5.6e-94 348.6 243 70.8
Sc02g0004370 Simmondsia chinensis HOM05D006006 ORTHO05D007566 1.8e-92 343.6 242 71.1
SGA_v2.0_scaffold25G11170 Striga asiatica HOM05D006006 ORTHO05D007566 3.5e-88 329.3 241 68.9
Pp3c6_4630 Physcomitrium patens HOM05D006006 ORTHO05D007566 7.9e-88 328.2 328 52.1
SMO228G0011 Selaginella moellendorffii HOM05D006006 ORTHO05D007566 1.4e-84 317.4 244 62.3
AagrBONN_evm.TU.Sc2ySwM_344.2333 Anthoceros agrestis HOM05D006006 ORTHO05D007566 3.4e-67 259.6 173 70.5
MCO04G174 Micromonas commoda HOM05D006006 ORTHO05D007566 1.2e-64 251.1 251 49.0
AUR62025132 Chenopodium quinoa HOM05D006006 ORTHO05D007566 7.9e-64 248.4 201 60.7
AUR62037127 Chenopodium quinoa HOM05D006006 ORTHO05D007566 8.8e-63 245.0 201 61.2
TAR625G0955 Trochodendron aralioides HOM05D006006 ORTHO05D007566 2.0e-59 233.8 162 68.5
PRCOL_00006391 Prasinoderma coloniale HOM05D006006 ORTHO05D007566 6.7e-55 218.8 185 55.7
Cre02.g116000 Chlamydomonas reinhardtii HOM05D006006 ORTHO05D007566 7.7e-51 205.3 180 58.9
Pp3c5_24650 Physcomitrium patens HOM05D006006 ORTHO05D007566 2.7e-48 196.8 163 63.2
SGA_v2.0_scaffold35G14089 Striga asiatica HOM05D006006 ORTHO05D007566 3.5e-27 126.7 81 72.8
Ah.02g110550 Amaranthus hybridus HOM05D006006 ORTHO05D007566 2.5e-25 120.6 73 78.1
CDE04G1521 Ceratophyllum demersum HOM05D000566 ORTHO05D000686 8.0e-16 89.0 57 64.9
Pp3c16_22840 Physcomitrium patens HOM05D006006 ORTHO05D318415 8.6e-10 68.9 53 64.2


User provided reference genes

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