Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018312 Carpinus fangiana HOM05D006715 ORTHO05D008345 0.0e+00 1308.9 654 100.0
CiPaw.16G011000 Carya illinoinensis HOM05D006715 ORTHO05D008345 5.0e-245 851.3 622 71.9
Haze_17767 Corylus avellana HOM05D006715 ORTHO05D008345 1.8e-218 763.1 402 94.0
QL09p013340 Quercus lobata HOM05D006715 ORTHO05D008345 2.8e-216 755.7 662 63.6
MD05G1027900 Malus domestica HOM05D006715 ORTHO05D008345 7.3e-196 688.0 682 59.2
Prupe.8G033600 Prunus persica HOM05D006715 ORTHO05D008345 2.6e-193 679.5 683 58.1
RcHm_v2.0_Chr6g0275051 Rosa chinensis HOM05D006715 ORTHO05D008345 6.6e-189 664.8 674 55.5
FvH4_2g13430 Fragaria vesca HOM05D006715 ORTHO05D008345 2.6e-185 652.9 669 55.3
FAN24G1213 Fragaria x ananassa HOM05D006715 ORTHO05D008345 4.4e-185 652.1 669 55.3
TWI34G0194 Tripterygium wilfordii HOM05D006715 ORTHO05D008345 3.2e-183 646.0 718 52.9
Manes.02G180601 Manihot esculenta HOM05D006715 ORTHO05D008345 1.0e-181 641.0 677 54.8
CANSAT25G3857 Cannabis sativa HOM05D006715 ORTHO05D008345 2.1e-179 633.3 689 55.2
Potri.005G193500 Populus trichocarpa HOM05D006715 ORTHO05D008345 3.5e-174 615.9 664 55.3
Thecc.08G154500 Theobroma cacao HOM05D006715 ORTHO05D008345 1.1e-172 610.9 659 53.4
Duzib093G1010 Durio zibethinus HOM05D006715 ORTHO05D008345 6.2e-171 605.1 660 52.1
TAR381G1273 Trochodendron aralioides HOM05D006715 ORTHO05D008345 2.0e-169 600.1 689 51.1
ClCG08G002210 Citrullus lanatus HOM05D006715 ORTHO05D008345 1.1e-167 594.3 668 51.3
Lj2g0009741 Lotus japonicus HOM05D006715 ORTHO05D008345 2.4e-167 593.2 662 52.4
Actinidia17784 Actinidia chinensis HOM05D006715 ORTHO05D008345 1.3e-165 587.4 667 51.9
Atru.chr13.2084 Acer truncatum HOM05D006715 ORTHO05D008345 1.8e-165 587.0 647 52.9
arahy.Tifrunner.gnm1.ann1.6MC3QX Arachis hypogaea HOM05D006715 ORTHO05D008345 4.3e-164 582.4 687 49.9
arahy.Tifrunner.gnm1.ann1.SG7PGU Arachis hypogaea HOM05D006715 ORTHO05D008345 1.3e-163 580.9 709 49.1
Gorai.010G134600 Gossypium raimondii HOM05D006715 ORTHO05D008345 1.6e-163 580.5 646 52.3
Phvul.004G094200 Phaseolus vulgaris HOM05D006715 ORTHO05D008345 1.4e-162 577.4 653 53.6
Ciclev10000601m.g Citrus clementina HOM05D006715 ORTHO05D008345 1.8e-162 577.0 665 52.3
Cpa.g.sc1027.1 Carica papaya HOM05D006715 ORTHO05D008345 3.1e-162 576.2 645 51.5
Gohir.A06G112504 Gossypium hirsutum HOM05D006715 ORTHO05D008345 5.3e-162 575.5 648 51.5
Lj7A376T34 Lonicera japonica HOM05D006715 ORTHO05D008345 2.0e-161 573.5 669 49.8
RcHm_v2.0_Chr5g0050861 Rosa chinensis HOM05D006715 ORTHO05D008345 7.6e-161 571.6 560 55.0
Psat1g102000 Pisum sativum HOM05D006715 ORTHO05D008345 9.9e-161 571.2 659 51.3
Medtr2g045070 Medicago truncatula HOM05D006715 ORTHO05D008345 2.4e-159 566.6 653 51.0
VMungo0464G1764 Vigna mungo HOM05D006715 ORTHO05D008345 5.5e-159 565.5 668 51.0
MELO3C025024.2 Cucumis melo HOM05D006715 ORTHO05D008345 8.7e-157 558.1 673 48.4
Sed0009104 Sechium edule HOM05D006715 ORTHO05D008345 2.9e-152 543.1 675 48.9
Eucgr.F02698 Eucalyptus grandis HOM05D006715 ORTHO05D008345 5.5e-151 538.9 680 48.5
FAN27G2814 Fragaria x ananassa HOM05D006715 ORTHO05D008345 8.7e-149 531.6 554 55.2
PGR042G1662 Punica granatum HOM05D006715 ORTHO05D008345 1.5e-148 530.8 666 50.2
Glyma.16G166500 Glycine max HOM05D006715 ORTHO05D008345 2.6e-145 520.0 659 48.6
Hund26691 Selenicereus undatus HOM05D006715 ORTHO05D008345 1.0e-144 518.1 686 46.6
Nn5g28769 Nelumbo nucifera HOM05D006715 ORTHO05D008345 2.2e-144 516.9 712 46.5
Nitab4.5_0001187g0100 Nicotiana tabacum HOM05D006715 ORTHO05D008345 2.2e-144 516.9 671 46.2
CAN.G1215.10 Capsicum annuum HOM05D006715 ORTHO05D008345 7.2e-143 511.9 671 44.9
COL.COLO4_29857 Corchorus olitorius HOM05D006715 ORTHO05D008345 9.3e-143 511.5 509 53.6
GSVIVG01034549001 Vitis vinifera HOM05D006715 ORTHO05D008345 6.1e-142 508.8 518 55.6
Aqoxy5G00857 Aquilegia oxysepala HOM05D006715 ORTHO05D008345 1.5e-140 504.2 662 48.0
TPR.G23114 Trifolium pratense HOM05D006715 ORTHO05D008345 9.7e-140 501.5 480 54.6
Sopen04g027550 Solanum pennellii HOM05D006715 ORTHO05D008345 4.8e-139 499.2 680 43.8
Rhsim05G0181200 Rhododendron simsii HOM05D006715 ORTHO05D008345 7.2e-135 485.3 547 49.0
CsaV3_6G002600 Cucumis sativus L. HOM05D006715 ORTHO05D008345 2.0e-132 477.2 549 51.4
vmacro20039 Vaccinium macrocarpon HOM05D006715 ORTHO05D008345 4.4e-132 476.1 660 44.8
PSO675G4790 Papaver somniferum HOM05D006715 ORTHO05D008345 1.7e-131 474.2 685 44.2
Lsat_1_v5_gn_9_41180 Lactuca sativa HOM05D006715 ORTHO05D008345 1.8e-130 470.7 656 45.3
SGA_v2.0_scaffold25G11186 Striga asiatica HOM05D006715 ORTHO05D008345 3.1e-130 469.9 682 44.1
Peaxi162Scf00599g00121 Petunia axillaris HOM05D006715 ORTHO05D008345 9.1e-130 468.4 631 45.5
THA.LOC104804670 Tarenaya hassleriana HOM05D006715 ORTHO05D008345 2.6e-129 466.8 653 44.0
MSTRG.24217 Avicennia marina HOM05D006715 ORTHO05D008345 4.8e-123 446.0 728 40.7
Migut.N03207 Erythranthe guttata HOM05D006715 ORTHO05D008345 5.3e-122 442.6 684 43.6
ECA232G1953 Erigeron canadensis HOM05D006715 ORTHO05D008345 1.5e-119 434.5 652 43.7
Gohir.D06G116900 Gossypium hirsutum HOM05D006715 ORTHO05D008345 2.1e-110 404.1 452 52.4
Sp1g32410 Schrenkiella parvula HOM05D006715 ORTHO05D008345 2.7e-110 403.7 647 41.4
DCAR_010095 Daucus carota HOM05D006715 ORTHO05D008345 1.7e-107 394.4 480 47.7
Ca_26954_v3 Cicer arietinum L. HOM05D006715 ORTHO05D008345 2.2e-107 394.0 502 51.6
Thhalv10003905m.g Eutrema salsugineum HOM05D006715 ORTHO05D008345 6.3e-107 392.5 650 40.0
AL1G51600 Arabidopsis lyrata HOM05D006715 ORTHO05D008345 2.0e-105 387.5 640 40.2
HanXRQChr11g0320291 Helianthus annuus HOM05D006715 ORTHO05D008345 5.0e-104 382.9 673 42.2
unitig_21.g20147 Utricularia gibba HOM05D006715 ORTHO05D008345 4.7e-102 376.3 671 40.2
CDE12G0089 Ceratophyllum demersum HOM05D006715 ORTHO05D008345 5.2e-101 372.9 668 38.3
SHI09071 Sapria himalayana HOM05D006715 ORTHO05D008345 5.7e-100 369.4 745 38.1
Aa31LG6G9940 Aethionema arabicum HOM05D006715 ORTHO05D008345 9.8e-100 368.6 677 39.0
EL10Ac1g01568 Beta vulgaris HOM05D006715 ORTHO05D008345 2.2e-99 367.5 645 40.9
AT1G43245 Arabidopsis thaliana HOM05D006715 ORTHO05D008345 4.9e-99 366.3 654 38.5
BcaB01g02294 Brassica carinata HOM05D006715 ORTHO05D008345 6.6e-96 355.9 647 38.6
Dinv41067 Davidia involucrata HOM05D006715 ORTHO05D008345 8.6e-96 355.5 342 56.4
BcaC04g24108 Brassica carinata HOM05D006715 ORTHO05D008345 4.7e-94 349.7 641 39.8
SalBow6G6609 Salvia bowleyana HOM05D006715 ORTHO05D008345 2.0e-92 344.4 670 38.4
PGSC0003DMG400024094 Solanum tuberosum HOM05D006715 ORTHO05D008345 4.4e-92 343.2 392 44.9
ATR0820G173 Amborella trichopoda HOM05D006715 ORTHO05D008345 1.7e-91 341.3 675 38.8
Lalb_Chr01g0009561 Lupinus albus HOM05D006715 ORTHO05D008345 2.7e-89 334.0 307 56.4
Zm00001eb083170 Zea mays HOM05D006715 ORTHO05D008345 5.8e-84 316.2 668 36.2
Os04g0423600 Oryza sativa ssp. japonica HOM05D006715 ORTHO05D008345 1.2e-81 308.5 676 34.9
AUR62026687 Chenopodium quinoa HOM05D006715 ORTHO05D008345 2.1e-81 307.8 321 52.0
BolC9t53031H Brassica oleracea HOM05D006715 ORTHO05D008345 3.5e-81 307.0 643 37.2
Nitab4.5_0002764g0020 Nicotiana tabacum HOM05D006715 ORTHO05D008345 6.0e-81 306.2 363 43.8
A09p00880 Brassica napus HOM05D006715 ORTHO05D008345 1.7e-80 304.7 551 38.5
C09p00980 Brassica napus HOM05D006715 ORTHO05D008345 8.6e-80 302.4 643 37.6
BraA09t35760Z Brassica rapa HOM05D006715 ORTHO05D008345 1.9e-79 301.2 603 37.5
CSS0020422 Camellia sinensis var. sinensis HOM05D006715 ORTHO05D008345 1.5e-76 291.6 256 58.2
Potri.005G193701 Populus trichocarpa HOM05D006715 ORTHO05D008345 1.5e-71 275.0 312 50.3
Glyma.16G166333 Glycine max HOM05D006715 ORTHO05D008345 4.4e-68 263.5 260 52.7
TAR381G1110 Trochodendron aralioides HOM05D006715 ORTHO05D008345 4.4e-68 263.5 313 47.9
AUR62040600 Chenopodium quinoa HOM05D006715 ORTHO05D008345 2.9e-67 260.8 364 43.7
Cc10_g14930 Coffea canephora HOM05D006715 ORTHO05D008345 2.7e-65 254.2 351 45.6
MBI17_g41095_MAGBIO Magnolia biondii HOM05D006715 ORTHO05D008345 2.7e-65 254.2 365 46.8
Lj2g0026984 Lotus japonicus HOM05D006715 ORTHO05D008345 3.0e-64 250.8 199 65.3
CARHR035370 Cardamine hirsuta HOM05D006715 ORTHO05D008345 8.7e-64 249.2 424 41.5
Lalb_Chr01g0009551 Lupinus albus HOM05D006715 ORTHO05D008345 5.3e-61 240.0 320 45.9
Sc02g0003950 Simmondsia chinensis HOM05D006715 ORTHO05D008345 3.4e-52 210.7 238 49.2
CSS0028068 Camellia sinensis var. sinensis HOM05D006715 ORTHO05D008345 4.5e-52 210.3 309 44.0
Carub.0001s3453 Capsella rubella HOM05D006715 ORTHO05D008345 5.8e-52 209.9 364 36.8
Glyma.16G166267 Glycine max HOM05D006715 ORTHO05D008345 6.0e-49 199.9 227 54.6
SEGI_11470 Sequoiadendron giganteum HOM05D006715 ORTHO05D008345 6.7e-48 196.4 363 38.3
HPP92_009296 Vanilla planifolia HOM05D006715 ORTHO05D008345 1.3e-46 192.2 351 39.3
Oeu031098.1 Olea europaea HOM05D006715 ORTHO05D008345 3.2e-42 177.6 376 38.0
HPP92_009297 Vanilla planifolia HOM05D006715 ORTHO05D008345 7.4e-39 166.4 289 37.4
SEGI_34185 Sequoiadendron giganteum HOM05D006715 ORTHO05D008345 3.1e-37 161.0 434 27.6
Gohir.1Z049355 Gossypium hirsutum HOM05D006715 ORTHO05D008345 1.3e-35 155.6 135 59.3
Carub.0001s3454 Capsella rubella HOM05D006715 ORTHO05D008345 1.9e-31 141.7 208 46.2
SEGI_20433 Sequoiadendron giganteum HOM05D006715 ORTHO05D008345 7.2e-26 123.2 241 40.2
CSS0046539 Camellia sinensis var. sinensis HOM05D006715 ORTHO05D008345 1.8e-24 118.6 147 51.0
Medtr3g062560 Medicago truncatula HOM05D006715 ORTHO05D008345 3.4e-20 104.4 189 42.9
QL02p038810 Quercus lobata HOM05D006715 ORTHO05D008345 1.2e-17 95.9 169 39.6
TAR381G0879 Trochodendron aralioides HOM05D006715 ORTHO05D008345 7.0e-13 80.1 171 33.3
CSS0020713 Camellia sinensis var. sinensis HOM05D006715 ORTHO05D008345 7.7e-12 76.6 146 40.4
arahy.Tifrunner.gnm1.ann1.12T13Y Arachis hypogaea HOM05D006715 ORTHO05D008345 2.2e-11 75.1 48 66.7
Sc02g0003960 Simmondsia chinensis HOM05D006715 ORTHO05D008345 9.4e-10 69.7 101 49.5
MCO09G489 Micromonas commoda HOM05D006715 ORTHO05D008345 1.4e-08 65.9 383 24.0
SEGI_02927 Sequoiadendron giganteum HOM05D006715 ORTHO05D008345 1.8e-08 65.5 222 26.6
MCO04G092 Micromonas commoda HOM05D004492 ORTHO05D005602 6.7e-08 63.5 391 25.1
PRCOL_00006858 Prasinoderma coloniale HOM05D004492 ORTHO05D005602 2.6e-07 61.6 131 26.7
CSS0011701 Camellia sinensis var. sinensis HOM05D006715 ORTHO05D008345 1.3e-06 59.3 33 75.8


User provided reference genes

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