Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018307 Carpinus fangiana HOM05D015223 ORTHO05D010674 0.0e+00 4598.1 2415 100.0
Haze_17782 Corylus avellana HOM05D015223 ORTHO05D010674 0.0e+00 2944.5 1896 85.2
CiPaw.16G010100 Carya illinoinensis HOM05D015223 ORTHO05D010674 0.0e+00 1192.6 2216 41.8
Prupe.8G035200 Prunus persica HOM05D012764 ORTHO05D017940 3.4e-73 282.3 2616 24.5
Potri.005G194350 Populus trichocarpa HOM05D015223 ORTHO05D037420 1.9e-63 250.0 2631 23.6
MD05G1029500 Malus domestica HOM05D012764 ORTHO05D017940 6.9e-58 231.5 2654 24.5
Potri.002G066450 Populus trichocarpa HOM05D015223 ORTHO05D037420 3.4e-57 229.2 2650 23.3
Atru.chr13.2071 Acer truncatum HOM05D036810 ORTHO05D030759 7.4e-52 211.5 1427 26.4
Duzib116G0432 Durio zibethinus HOM05D013130 ORTHO05D022454 5.5e-39 168.7 2563 23.6
CiPaw.16G010200 Carya illinoinensis HOM05D013130 ORTHO05D030758 1.0e-37 164.5 164 61.6
Thecc.08G155200 Theobroma cacao HOM05D013130 ORTHO05D022454 2.4e-34 153.3 2589 24.0
TAR628G0624 Trochodendron aralioides HOM05D013130 ORTHO05D010674 5.3e-34 152.1 1017 26.6
Dinv41063 Davidia involucrata HOM05D011323 ORTHO05D010674 9.1e-34 151.4 536 31.5
Sabra02G0052900 Salix brachista HOM05D015223 ORTHO05D037420 3.8e-32 146.0 2619 22.5
Dinv41064 Davidia involucrata HOM05D016043 ORTHO05D015789 4.2e-31 142.5 531 31.1
Dinv25882 Davidia involucrata HOM05D016043 ORTHO05D010674 2.8e-27 129.8 864 26.3
Gohir.A05G244401 Gossypium hirsutum HOM05D013130 ORTHO05D022454 6.3e-27 128.6 820 28.2
Gohir.D05G245401 Gossypium hirsutum HOM05D013130 ORTHO05D022454 2.0e-25 123.6 739 28.0
Dinv25881 Davidia involucrata HOM05D016043 ORTHO05D015789 2.1e-22 113.6 623 27.9
Gorai.009G255200 Gossypium raimondii HOM05D013130 ORTHO05D022454 1.0e-21 111.3 796 26.9
PGR044G2651 Punica granatum HOM05D012764 ORTHO05D010674 1.4e-21 110.9 330 33.6
Lj4C698G20 Lonicera japonica HOM05D011323 ORTHO05D010674 8.8e-21 108.2 537 28.7
CANSAT25G2759 Cannabis sativa HOM05D013130 ORTHO05D010674 5.7e-20 105.5 302 35.4
Peaxi162Scf00079g00245 Petunia axillaris HOM05D011323 ORTHO05D010674 8.2e-19 101.7 375 29.1
Nitab4.5_0001344g0010 Nicotiana tabacum HOM05D011323 ORTHO05D010674 4.1e-18 99.4 388 28.6
RcHm_v2.0_Chr6g0274831 Rosa chinensis HOM05D012764 ORTHO05D010674 9.1e-18 98.2 209 37.3
Cc10_g15040 Coffea canephora HOM05D011323 ORTHO05D010674 3.5e-17 96.3 499 28.1
PGSC0003DMG400006365 Solanum tuberosum HOM05D011323 ORTHO05D010674 7.7e-17 95.1 510 28.4
Solyc04g071660.3 Solanum lycopersicum HOM05D011323 ORTHO05D010674 2.2e-16 93.6 515 28.3
FvH4_2g13370 Fragaria vesca HOM05D012764 ORTHO05D017940 5.0e-16 92.4 173 37.0
Actinidia10638 Actinidia chinensis HOM05D016043 ORTHO05D015789 8.5e-16 91.7 1218 23.9
FAN24G2902 Fragaria x ananassa HOM05D012764 ORTHO05D017940 8.5e-16 91.7 173 37.0
ECA247G3667 Erigeron canadensis HOM05D011323 ORTHO05D010674 1.1e-15 91.3 457 26.7
FAN20G3084 Fragaria x ananassa HOM05D012764 ORTHO05D017940 1.9e-15 90.5 548 27.0
Nn1g06053 Nelumbo nucifera HOM05D011323 ORTHO05D010674 1.9e-15 90.5 320 31.6
AUR62040588 Chenopodium quinoa HOM05D018884 ORTHO05D010674 2.5e-15 90.1 144 40.3
CSS0012606 Camellia sinensis var. sinensis HOM05D033310 ORTHO05D010674 3.2e-15 89.7 84 57.1
AUR62026679 Chenopodium quinoa HOM05D018884 ORTHO05D010674 4.2e-15 89.4 81 55.6
MSTRG.1096 Avicennia marina HOM05D027784 ORTHO05D010674 7.2e-15 88.6 171 38.0
Lj7A375T60 Lonicera japonica HOM05D011323 ORTHO05D010674 7.2e-15 88.6 186 34.9
Atru.chr13.2072 Acer truncatum HOM05D015223 ORTHO05D030758 1.2e-14 87.8 1051 23.0
HanXRQChr11g0343441 Helianthus annuus HOM05D011323 ORTHO05D010674 1.0e-13 84.7 171 35.1
DCAR_001148 Daucus carota HOM05D033900 ORTHO05D010674 6.8e-13 82.0 83 48.2
EL10Ac1g01580 Beta vulgaris HOM05D018884 ORTHO05D010674 8.8e-13 81.6 81 54.3
Sopen04g027650 Solanum pennellii HOM05D011323 ORTHO05D010674 1.5e-12 80.9 741 25.2
Oeu051274.3 Olea europaea HOM05D027784 ORTHO05D010674 2.0e-12 80.5 804 24.5
FAN24G0895 Fragaria x ananassa HOM05D012764 ORTHO05D010674 4.4e-12 79.3 206 32.5
FvH4_2g13350 Fragaria vesca HOM05D012764 ORTHO05D010674 1.7e-11 77.4 194 33.5
Nitab4.5_0001187g0020 Nicotiana tabacum HOM05D011323 ORTHO05D010674 1.4e-10 74.3 642 23.4
SGA_v2.0_scaffold108G30881 Striga asiatica HOM05D001241 ORTHO05D010674 1.4e-10 74.3 183 33.9
THA.LOC104812032 Tarenaya hassleriana HOM05D010491 ORTHO05D010674 1.4e-10 74.3 155 36.8
GSVIVG01034553001 Vitis vinifera HOM05D016043 ORTHO05D015789 2.4e-10 73.6 136 39.0
CARHR070280 Cardamine hirsuta HOM05D010491 ORTHO05D012559 1.2e-09 71.2 81 49.4
Aa31LG4G6810 Aethionema arabicum HOM05D010491 ORTHO05D012559 1.6e-09 70.9 83 47.0
Hund26684 Selenicereus undatus HOM05D011323 ORTHO05D010674 1.6e-09 70.9 83 48.2
Thhalv10018017m.g Eutrema salsugineum HOM05D010491 ORTHO05D012559 2.0e-09 70.5 80 50.0
FAN15G3692 Fragaria x ananassa HOM05D012764 ORTHO05D017940 3.5e-09 69.7 474 27.2
Migut.C00977 Erythranthe guttata HOM05D027784 ORTHO05D010674 1.3e-08 67.8 891 24.0
Sp5g31880 Schrenkiella parvula HOM05D010491 ORTHO05D012559 3.8e-08 66.2 133 32.3
A07p42390 Brassica napus HOM05D010491 ORTHO05D012559 5.0e-08 65.9 105 41.0
Glyma.02G080700 Glycine max HOM05D028233 ORTHO05D015681 8.5e-08 65.1 41 68.3
C06p50950 Brassica napus HOM05D010491 ORTHO05D012559 1.5e-07 64.3 105 39.0
BolC6t40120H Brassica oleracea HOM05D010491 ORTHO05D012559 1.5e-07 64.3 105 39.0
Phvul.004G092800 Phaseolus vulgaris HOM05D028233 ORTHO05D015681 4.2e-07 62.8 37 75.7
Glyma.16G165600 Glycine max HOM05D028233 ORTHO05D015681 7.2e-07 62.0 35 74.3
Ciclev10002431m.g Citrus clementina HOM05D013130 ORTHO05D030758 9.5e-07 61.6 127 37.8
BolC6t38310H Brassica oleracea HOM05D010491 ORTHO05D012559 1.6e-06 60.8 83 42.2
VMungo0464G2099 Vigna mungo HOM05D028233 ORTHO05D012559 1.6e-06 60.8 37 73.0
arahy.Tifrunner.gnm1.ann1.UU4M73 Arachis hypogaea HOM05D053442 ORTHO05D010674 4.7e-06 59.3 76 47.4
BcaC08g45512 Brassica carinata HOM05D010491 ORTHO05D012559 4.7e-06 59.3 59 49.2
C06p31820 Brassica napus HOM05D010491 ORTHO05D012559 4.7e-06 59.3 59 49.2
Psat1g100480 Pisum sativum HOM05D014873 ORTHO05D015681 4.7e-06 59.3 55 52.7
BcaB02g07074 Brassica carinata HOM05D010491 ORTHO05D012559 6.1e-06 58.9 41 58.5
Eucgr.F04210 Eucalyptus grandis HOM05D015223 ORTHO05D010674 6.1e-06 58.9 70 48.6
arahy.Tifrunner.gnm1.ann1.R835TB Arachis hypogaea HOM05D053442 ORTHO05D010674 8.0e-06 58.5 38 68.4


User provided reference genes

Program Settings