Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018298 Carpinus fangiana HOM05D004894 ORTHO05D005689 1.3e-86 323.2 174 100.0
Haze_17792 Corylus avellana HOM05D004894 ORTHO05D005689 1.3e-80 303.1 174 93.1
Haze_17777 Corylus avellana HOM05D004894 ORTHO05D005689 6.7e-80 300.8 172 93.6
QL02p037592 Quercus lobata HOM05D004894 ORTHO05D005689 2.2e-43 179.5 168 58.9
QL02p038562 Quercus lobata HOM05D004894 ORTHO05D005689 2.2e-43 179.5 168 58.9
CiPaw.16G009500 Carya illinoinensis HOM05D004894 ORTHO05D005689 3.2e-42 175.6 166 57.8
QL02p038558 Quercus lobata HOM05D004894 ORTHO05D005689 4.7e-41 171.8 154 59.1
Cfa018296 Carpinus fangiana HOM05D004894 ORTHO05D005689 8.0e-41 171.0 141 71.6
QL02p037589 Quercus lobata HOM05D004894 ORTHO05D005689 1.5e-39 166.8 175 54.9
MD10G1032700 Malus domestica HOM05D004894 ORTHO05D005689 7.7e-36 154.5 159 55.3
MD10G1032600 Malus domestica HOM05D004894 ORTHO05D005689 1.0e-32 144.1 154 51.9
CiPaw.15G014000 Carya illinoinensis HOM05D004894 ORTHO05D005689 1.4e-32 143.7 161 53.4
Prupe.8G038100 Prunus persica HOM05D004894 ORTHO05D005689 8.8e-32 141.0 155 51.0
Ciclev10003770m.g Citrus clementina HOM05D004894 ORTHO05D005689 2.6e-31 139.4 176 46.0
RcHm_v2.0_Chr6g0274541 Rosa chinensis HOM05D004894 ORTHO05D009560 3.7e-30 135.6 165 47.3
Ciclev10003123m.g Citrus clementina HOM05D004894 ORTHO05D005689 7.0e-29 131.3 149 50.3
Haze_17791 Corylus avellana HOM05D004894 ORTHO05D009560 9.5e-26 120.9 183 42.1
MD10G1032400 Malus domestica HOM05D004894 ORTHO05D005689 3.6e-25 119.0 127 52.8
Cfa018299 Carpinus fangiana HOM05D004894 ORTHO05D005689 1.0e-24 117.5 180 41.7
Cfa018297 Carpinus fangiana HOM05D004894 ORTHO05D005689 4.0e-24 115.5 153 44.4
TWI34G1211 Tripterygium wilfordii HOM05D004894 ORTHO05D005689 8.3e-22 107.8 170 38.8
Sabra13G0011900 Salix brachista HOM05D004894 ORTHO05D009560 2.4e-21 106.3 181 37.6
FAN24G0571 Fragaria x ananassa HOM05D004894 ORTHO05D005689 5.4e-21 105.1 131 45.0
Ciclev10002638m.g Citrus clementina HOM05D004894 ORTHO05D005689 1.2e-20 104.0 168 38.7
FAN27G2788 Fragaria x ananassa HOM05D004894 ORTHO05D009560 1.6e-20 103.6 131 43.5
Psat1g100960 Pisum sativum HOM05D004894 ORTHO05D005689 5.9e-20 101.7 162 40.1
FvH4_2g13220 Fragaria vesca HOM05D004894 ORTHO05D005689 3.8e-19 99.0 149 41.6
FAN24G3270 Fragaria x ananassa HOM05D004894 ORTHO05D005689 8.6e-19 97.8 149 40.9
Lalb_Chr02g0141491 Lupinus albus HOM05D004894 ORTHO05D005689 7.3e-18 94.7 181 35.4
Lalb_Chr03g0035461 Lupinus albus HOM05D004894 ORTHO05D005689 1.2e-17 94.0 162 35.8
TPR.G9011 Trifolium pratense HOM05D004894 ORTHO05D005689 1.2e-17 94.0 164 36.6
FAN20G3174 Fragaria x ananassa HOM05D004894 ORTHO05D005689 1.6e-17 93.6 166 38.6
TPR.G12635 Trifolium pratense HOM05D004894 ORTHO05D005689 4.7e-17 92.0 167 34.1
arahy.Tifrunner.gnm1.ann1.VH20NJ Arachis hypogaea HOM05D004894 ORTHO05D005689 6.1e-17 91.7 172 35.5
Glyma.16G164600 Glycine max HOM05D004894 ORTHO05D005689 8.0e-17 91.3 163 34.4
Lalb_Chr19g0130151 Lupinus albus HOM05D004894 ORTHO05D005689 2.3e-16 89.7 165 35.2
Lalb_Chr19g0130161 Lupinus albus HOM05D004894 ORTHO05D005689 2.3e-16 89.7 165 35.2
Psat6g191360 Pisum sativum HOM05D004894 ORTHO05D005689 2.3e-16 89.7 144 34.0
Lj2g0017521 Lotus japonicus HOM05D004894 ORTHO05D005689 3.0e-16 89.4 160 34.4
Atru.chr13.2013 Acer truncatum HOM05D004894 ORTHO05D005689 6.8e-16 88.2 183 34.4
SHI09078 Sapria himalayana HOM05D004894 ORTHO05D005689 8.9e-16 87.8 158 36.1
Lj5g0011961 Lotus japonicus HOM05D004894 ORTHO05D005689 1.2e-15 87.4 165 35.8
arahy.Tifrunner.gnm1.ann1.P5DTJP Arachis hypogaea HOM05D004894 ORTHO05D005689 2.6e-15 86.3 153 35.3
Phvul.007G082200 Phaseolus vulgaris HOM05D004894 ORTHO05D005689 2.6e-15 86.3 181 31.5
Lalb_Chr14g0362611 Lupinus albus HOM05D004894 ORTHO05D005689 3.4e-15 85.9 159 33.3
Psat6g191440 Pisum sativum HOM05D004894 ORTHO05D005689 7.5e-15 84.7 132 34.1
Glyma.20G168700 Glycine max HOM05D004894 ORTHO05D005689 9.8e-15 84.3 182 33.5
Lalb_Chr03g0035451 Lupinus albus HOM05D004894 ORTHO05D005689 1.3e-14 84.0 160 31.9
Medtr6g038010 Medicago truncatula HOM05D004894 ORTHO05D005689 1.3e-14 84.0 164 36.0
Psat6g191520 Pisum sativum HOM05D004894 ORTHO05D005689 1.3e-14 84.0 144 31.2
Psat6g191960 Pisum sativum HOM05D004894 ORTHO05D005689 1.3e-14 84.0 144 31.2
PGR042G1870 Punica granatum HOM05D027166 ORTHO05D022406 1.3e-14 84.0 171 37.4
Medtr4g062290 Medicago truncatula HOM05D004894 ORTHO05D005689 1.7e-14 83.6 167 32.3
Lalb_Chr03g0035551 Lupinus albus HOM05D004894 ORTHO05D005689 2.9e-14 82.8 160 38.1
VMungo0720G1196 Vigna mungo HOM05D004894 ORTHO05D005689 2.9e-14 82.8 167 33.5
Ciclev10003802m.g Citrus clementina HOM05D004894 ORTHO05D005689 4.9e-14 82.0 180 35.6
Ca_10673_v3 Cicer arietinum L. HOM05D004894 ORTHO05D005689 6.4e-14 81.6 170 31.2
VMungo0464G0707 Vigna mungo HOM05D004894 ORTHO05D005689 1.1e-13 80.9 162 34.6
Ciclev10003694m.g Citrus clementina HOM05D004894 ORTHO05D005689 1.8e-13 80.1 152 36.2
Glyma.02G080000 Glycine max HOM05D004894 ORTHO05D005689 1.8e-13 80.1 167 31.7
Phvul.007G082100 Phaseolus vulgaris HOM05D004894 ORTHO05D005689 2.4e-13 79.7 170 31.8
Lalb_Chr19g0130051 Lupinus albus HOM05D004894 ORTHO05D005689 4.1e-13 79.0 170 30.6
Lalb_Chr19g0130071 Lupinus albus HOM05D004894 ORTHO05D005689 4.1e-13 79.0 170 30.6
VMungo0720G2185 Vigna mungo HOM05D004894 ORTHO05D005689 4.1e-13 79.0 173 30.1
Glyma.10G223100 Glycine max HOM05D004894 ORTHO05D005689 5.4e-13 78.6 171 33.3
Potri.013G013300 Populus trichocarpa HOM05D004894 ORTHO05D005689 7.0e-13 78.2 175 34.3
Lalb_Chr03g0035581 Lupinus albus HOM05D004894 ORTHO05D005689 9.2e-13 77.8 162 36.4
Glyma.10G223000 Glycine max HOM05D004894 ORTHO05D005689 3.5e-12 75.9 184 29.9
Glyma.10G140100 Glycine max HOM05D004894 ORTHO05D005689 4.6e-12 75.5 164 30.5
Psat7g222760 Pisum sativum HOM05D004894 ORTHO05D005689 7.8e-12 74.7 165 30.3
Phvul.004G091800 Phaseolus vulgaris HOM05D004894 ORTHO05D005689 1.3e-11 73.9 169 31.4
Lalb_Chr19g0130061 Lupinus albus HOM05D004894 ORTHO05D005689 3.9e-11 72.4 160 33.8
Thecc.08G156900 Theobroma cacao HOM05D007679 ORTHO05D009560 3.9e-11 72.4 148 33.1
VMungo0647G0768 Vigna mungo HOM05D004894 ORTHO05D005689 3.9e-11 72.4 177 32.2
Phvul.008G271200 Phaseolus vulgaris HOM05D004894 ORTHO05D005689 6.6e-11 71.6 172 32.0
Manes.02G182301 Manihot esculenta HOM05D004894 ORTHO05D005689 1.1e-10 70.9 177 32.8
Cpa.g.sc49.90 Carica papaya HOM05D007679 ORTHO05D009560 2.5e-10 69.7 158 31.6
PGR042G2832 Punica granatum HOM05D027166 ORTHO05D005689 4.3e-10 68.9 166 28.3
Psat6g191560 Pisum sativum HOM05D004894 ORTHO05D005689 5.6e-10 68.6 104 35.6
TPR.G36349 Trifolium pratense HOM05D004894 ORTHO05D005689 5.6e-10 68.6 166 30.1
Duzib041G0061 Durio zibethinus HOM05D007679 ORTHO05D009560 9.5e-10 67.8 150 32.7
Nn1g08310 Nelumbo nucifera HOM05D008403 ORTHO05D010317 9.5e-10 67.8 162 32.7
TPR.G36348 Trifolium pratense HOM05D004894 ORTHO05D005689 9.5e-10 67.8 161 31.1
Medtr4g065770 Medicago truncatula HOM05D004894 ORTHO05D005689 1.2e-09 67.4 170 30.6
TPR.G17037 Trifolium pratense HOM05D004894 ORTHO05D005689 1.2e-09 67.4 117 32.5
Cpa.g.sc49.91 Carica papaya HOM05D007679 ORTHO05D009560 2.1e-09 66.6 149 30.2
Thecc.08G157300 Theobroma cacao HOM05D007679 ORTHO05D009560 2.1e-09 66.6 170 30.0
Psat6g191480 Pisum sativum HOM05D004894 ORTHO05D005689 3.6e-09 65.9 104 33.7
Oeu046059.1 Olea europaea HOM05D011489 ORTHO05D014472 4.7e-09 65.5 187 29.9
THA.LOC104824471 Tarenaya hassleriana HOM05D001445 ORTHO05D001261 8.0e-09 64.7 181 30.9
Ah.05g179460 Amaranthus hybridus HOM05D001445 ORTHO05D001261 1.1e-08 64.3 167 35.9
Manes.02G182200 Manihot esculenta HOM05D004894 ORTHO05D009560 1.4e-08 63.9 156 32.7
COL.COLO4_34260 Corchorus olitorius HOM05D007679 ORTHO05D009560 1.8e-08 63.5 152 28.3
Psat4g130720 Pisum sativum HOM05D004894 ORTHO05D005689 1.8e-08 63.5 159 30.2
Psat7g222800 Pisum sativum HOM05D004894 ORTHO05D005689 1.8e-08 63.5 104 34.6
TPR.G12614 Trifolium pratense HOM05D004894 ORTHO05D005689 4.0e-08 62.4 162 30.2
Potri.016G001600 Populus trichocarpa HOM05D008403 ORTHO05D010317 6.8e-08 61.6 170 34.1
Medtr6g037940 Medicago truncatula HOM05D004894 ORTHO05D005689 8.9e-08 61.2 175 27.4
Solyc09g092170.3 Solanum lycopersicum HOM05D024866 ORTHO05D024787 1.5e-07 60.5 168 28.6
Medtr1g098430 Medicago truncatula HOM05D004894 ORTHO05D005689 2.6e-07 59.7 143 27.3
Medtr1g098410 Medicago truncatula HOM05D004894 ORTHO05D005689 3.4e-07 59.3 178 29.8
Rhsim02G0087900 Rhododendron simsii HOM05D008403 ORTHO05D010317 3.4e-07 59.3 163 30.1
Atru.chr2.1377 Acer truncatum HOM05D008403 ORTHO05D010317 4.4e-07 58.9 114 37.7
Duzib268G1784 Durio zibethinus HOM05D008403 ORTHO05D010317 4.4e-07 58.9 167 31.1
Lj6g0020324 Lotus japonicus HOM05D008403 ORTHO05D010317 4.4e-07 58.9 150 33.3
Gorai.009G264900 Gossypium raimondii HOM05D007679 ORTHO05D009560 7.5e-07 58.2 178 29.2
MSTRG.1100 Avicennia marina HOM05D011489 ORTHO05D014472 9.8e-07 57.8 174 32.8
Carub.0008s2541 Capsella rubella HOM05D004113 ORTHO05D005233 9.8e-07 57.8 137 33.6
Duzib041G0498 Durio zibethinus HOM05D007679 ORTHO05D009560 9.8e-07 57.8 170 30.0
BcaC04g23305 Brassica carinata HOM05D004113 ORTHO05D005233 1.3e-06 57.4 147 32.7
C09p09900 Brassica napus HOM05D004113 ORTHO05D005233 1.3e-06 57.4 147 32.7
BolC9t53899H Brassica oleracea HOM05D004113 ORTHO05D005233 1.3e-06 57.4 147 32.7
Gohir.A05G245500 Gossypium hirsutum HOM05D007679 ORTHO05D009560 1.3e-06 57.4 158 26.6
MBI19_g05147_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D001207 1.3e-06 57.4 162 30.9
Thecc.01G402600 Theobroma cacao HOM05D001445 ORTHO05D001261 1.3e-06 57.4 172 27.3
Medtr6g037920 Medicago truncatula HOM05D004894 ORTHO05D005689 1.7e-06 57.0 165 27.3
BcaB04g19979 Brassica carinata HOM05D004113 ORTHO05D005233 2.2e-06 56.6 135 33.3
A09p08750 Brassica napus HOM05D004113 ORTHO05D005233 2.2e-06 56.6 147 32.0
BraA09t36524Z Brassica rapa HOM05D004113 ORTHO05D005233 2.2e-06 56.6 147 32.0
Potri.008G013400 Populus trichocarpa HOM05D008403 ORTHO05D010317 2.2e-06 56.6 160 31.9
Potri.013G012733 Populus trichocarpa HOM05D010921 ORTHO05D013092 2.2e-06 56.6 162 31.5
AT5G64620 Arabidopsis thaliana HOM05D004113 ORTHO05D005233 2.9e-06 56.2 144 32.6
Duzib093G1264 Durio zibethinus HOM05D007679 ORTHO05D009560 2.9e-06 56.2 170 29.4
Eucgr.E00321 Eucalyptus grandis HOM05D001445 ORTHO05D001261 2.9e-06 56.2 165 30.3
Thhalv10005004m.g Eutrema salsugineum HOM05D004113 ORTHO05D005233 2.9e-06 56.2 131 31.3
Gohir.D05G252300 Gossypium hirsutum HOM05D007679 ORTHO05D009560 2.9e-06 56.2 178 31.5
Potri.013G012800 Populus trichocarpa HOM05D010921 ORTHO05D013092 2.9e-06 56.2 165 31.5
Rhsim02G0088000 Rhododendron simsii HOM05D008403 ORTHO05D010317 2.9e-06 56.2 138 34.1
AL8G42030 Arabidopsis lyrata HOM05D004113 ORTHO05D005233 3.7e-06 55.8 143 32.2
Oeu061438.1 Olea europaea HOM05D011489 ORTHO05D014472 4.9e-06 55.5 187 28.9
Atru.chr2.423 Acer truncatum HOM05D008403 ORTHO05D010317 6.4e-06 55.1 118 39.0
COL.COLO4_13382 Corchorus olitorius HOM05D007679 ORTHO05D009560 6.4e-06 55.1 103 31.1
Gohir.D05G247000 Gossypium hirsutum HOM05D007679 ORTHO05D009560 6.4e-06 55.1 178 25.8
Gorai.009G257700 Gossypium raimondii HOM05D007679 ORTHO05D009560 6.4e-06 55.1 153 27.5
MD06G1042400 Malus domestica HOM05D001445 ORTHO05D001261 6.4e-06 55.1 185 28.1
Medtr1g098200 Medicago truncatula HOM05D004894 ORTHO05D005689 6.4e-06 55.1 176 27.3
Medtr1g098400 Medicago truncatula HOM05D004894 ORTHO05D005689 6.4e-06 55.1 176 27.3
Psat4g219240 Pisum sativum HOM05D001445 ORTHO05D001261 6.4e-06 55.1 170 27.1
BraA06t26077Z Brassica rapa HOM05D004113 ORTHO05D005233 8.3e-06 54.7 159 33.3
Ca_26810_v3 Cicer arietinum L. HOM05D004894 ORTHO05D005689 8.3e-06 54.7 104 28.8
MBI19_g19942_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D010317 8.3e-06 54.7 168 30.4
Psat1g101000 Pisum sativum HOM05D004894 ORTHO05D005689 8.3e-06 54.7 145 29.0


User provided reference genes

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