Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018297 Carpinus fangiana HOM05D004894 ORTHO05D005689 1.6e-109 399.4 200 100.0
Cfa018299 Carpinus fangiana HOM05D004894 ORTHO05D005689 1.8e-57 226.5 200 62.5
Haze_17791 Corylus avellana HOM05D004894 ORTHO05D009560 1.6e-56 223.4 176 64.8
TWI34G1211 Tripterygium wilfordii HOM05D004894 ORTHO05D005689 1.1e-28 131.0 151 49.0
Haze_17792 Corylus avellana HOM05D004894 ORTHO05D005689 3.1e-28 129.4 150 46.7
Haze_17777 Corylus avellana HOM05D004894 ORTHO05D005689 1.2e-27 127.5 153 43.8
Cfa018298 Carpinus fangiana HOM05D004894 ORTHO05D005689 1.3e-26 124.0 153 44.4
CiPaw.16G009500 Carya illinoinensis HOM05D004894 ORTHO05D005689 4.1e-25 119.0 155 40.6
QL02p037592 Quercus lobata HOM05D004894 ORTHO05D005689 3.0e-23 112.8 158 39.9
QL02p038562 Quercus lobata HOM05D004894 ORTHO05D005689 3.0e-23 112.8 158 39.9
Ciclev10003770m.g Citrus clementina HOM05D004894 ORTHO05D005689 8.6e-23 111.3 186 40.3
MD10G1032600 Malus domestica HOM05D004894 ORTHO05D005689 1.6e-21 107.1 160 39.4
MD10G1032700 Malus domestica HOM05D004894 ORTHO05D005689 2.1e-21 106.7 163 37.4
QL02p038558 Quercus lobata HOM05D004894 ORTHO05D005689 3.6e-21 105.9 153 36.6
QL02p037589 Quercus lobata HOM05D004894 ORTHO05D005689 6.8e-20 101.7 153 35.3
Manes.02G182200 Manihot esculenta HOM05D004894 ORTHO05D009560 1.2e-19 100.9 148 37.8
Manes.02G182301 Manihot esculenta HOM05D004894 ORTHO05D005689 4.4e-19 99.0 155 38.7
Prupe.8G038100 Prunus persica HOM05D004894 ORTHO05D005689 5.8e-19 98.6 146 37.0
Ciclev10003123m.g Citrus clementina HOM05D004894 ORTHO05D005689 6.4e-18 95.1 156 34.6
MD10G1032400 Malus domestica HOM05D004894 ORTHO05D005689 6.4e-18 95.1 131 40.5
SHI09078 Sapria himalayana HOM05D004894 ORTHO05D005689 1.6e-16 90.5 162 35.2
CiPaw.15G014000 Carya illinoinensis HOM05D004894 ORTHO05D005689 2.1e-16 90.1 164 34.1
RcHm_v2.0_Chr6g0274541 Rosa chinensis HOM05D004894 ORTHO05D009560 3.5e-16 89.4 163 33.7
FAN24G0571 Fragaria x ananassa HOM05D004894 ORTHO05D005689 5.6e-14 82.0 137 36.5
Cpa.g.sc49.91 Carica papaya HOM05D007679 ORTHO05D009560 3.6e-13 79.3 155 28.4
Psat1g100960 Pisum sativum HOM05D004894 ORTHO05D005689 4.7e-13 79.0 158 32.3
Sabra13G0011900 Salix brachista HOM05D004894 ORTHO05D009560 4.7e-13 79.0 166 34.9
Cpa.g.sc49.90 Carica papaya HOM05D007679 ORTHO05D009560 8.1e-13 78.2 157 29.9
FAN27G2788 Fragaria x ananassa HOM05D004894 ORTHO05D009560 8.1e-13 78.2 137 33.6
Oeu046059.1 Olea europaea HOM05D011489 ORTHO05D014472 3.1e-12 76.3 201 30.3
Ciclev10002638m.g Citrus clementina HOM05D004894 ORTHO05D005689 6.8e-12 75.1 154 31.8
PGR042G1870 Punica granatum HOM05D027166 ORTHO05D022406 6.8e-12 75.1 159 33.3
TPR.G9011 Trifolium pratense HOM05D004894 ORTHO05D005689 8.9e-12 74.7 117 37.6
FvH4_2g13220 Fragaria vesca HOM05D004894 ORTHO05D005689 1.5e-11 73.9 135 34.8
Psat6g191520 Pisum sativum HOM05D004894 ORTHO05D005689 2.0e-11 73.6 150 29.3
Psat6g191960 Pisum sativum HOM05D004894 ORTHO05D005689 2.0e-11 73.6 150 29.3
FAN24G3270 Fragaria x ananassa HOM05D004894 ORTHO05D005689 3.4e-11 72.8 135 34.1
Oeu061438.1 Olea europaea HOM05D011489 ORTHO05D014472 3.4e-11 72.8 168 30.4
TPR.G12635 Trifolium pratense HOM05D004894 ORTHO05D005689 5.8e-11 72.0 140 33.6
Nn1g08310 Nelumbo nucifera HOM05D008403 ORTHO05D010317 9.9e-11 71.2 156 30.8
CSS0042410 Camellia sinensis var. sinensis HOM05D007679 ORTHO05D009560 1.3e-10 70.9 204 28.9
PGR042G2832 Punica granatum HOM05D027166 ORTHO05D005689 1.3e-10 70.9 167 31.7
Lalb_Chr03g0035451 Lupinus albus HOM05D004894 ORTHO05D005689 1.7e-10 70.5 158 29.1
Cfa018296 Carpinus fangiana HOM05D004894 ORTHO05D005689 3.8e-10 69.3 128 36.7
FAN20G3174 Fragaria x ananassa HOM05D004894 ORTHO05D005689 8.4e-10 68.2 155 32.9
Medtr4g062290 Medicago truncatula HOM05D004894 ORTHO05D005689 1.1e-09 67.8 155 29.0
CSS0029866 Camellia sinensis var. sinensis HOM05D008403 ORTHO05D010317 1.4e-09 67.4 143 34.3
Lj2g0017521 Lotus japonicus HOM05D004894 ORTHO05D005689 1.4e-09 67.4 154 29.2
Psat7g222760 Pisum sativum HOM05D004894 ORTHO05D005689 1.9e-09 67.0 136 29.4
arahy.Tifrunner.gnm1.ann1.P5DTJP Arachis hypogaea HOM05D004894 ORTHO05D005689 2.4e-09 66.6 153 31.4
Glyma.16G164600 Glycine max HOM05D004894 ORTHO05D005689 2.4e-09 66.6 159 26.4
Psat6g191440 Pisum sativum HOM05D004894 ORTHO05D005689 4.1e-09 65.9 136 29.4
PGR004G1501 Punica granatum HOM05D008403 ORTHO05D010317 7.1e-09 65.1 164 28.7
Rhsim02G0088000 Rhododendron simsii HOM05D008403 ORTHO05D010317 9.2e-09 64.7 165 27.9
VMungo0464G0707 Vigna mungo HOM05D004894 ORTHO05D005689 9.2e-09 64.7 143 35.0
Glyma.02G080000 Glycine max HOM05D004894 ORTHO05D005689 1.6e-08 63.9 136 29.4
Glyma.20G168700 Glycine max HOM05D004894 ORTHO05D005689 1.6e-08 63.9 136 34.6
TAR627G0317 Trochodendron aralioides HOM05D008403 ORTHO05D010317 2.1e-08 63.5 98 34.7
Phvul.004G091800 Phaseolus vulgaris HOM05D004894 ORTHO05D005689 2.7e-08 63.2 142 32.4
Sabra01G0083000 Salix brachista HOM05D023468 ORTHO05D022406 2.7e-08 63.2 120 34.2
MBI18_g04557_MAGBIO Magnolia biondii HOM05D008403 ORTHO05D010317 3.5e-08 62.8 111 37.8
Potri.001G109700 Populus trichocarpa HOM05D023468 ORTHO05D022406 3.5e-08 62.8 125 32.8
Sabra08G0008100 Salix brachista HOM05D008403 ORTHO05D010317 3.5e-08 62.8 158 31.0
PSO675G0961 Papaver somniferum HOM05D008403 ORTHO05D010317 6.0e-08 62.0 129 33.3
Potri.003G122000 Populus trichocarpa HOM05D023468 ORTHO05D022406 6.0e-08 62.0 120 33.3
Potri.008G013400 Populus trichocarpa HOM05D008403 ORTHO05D010317 7.8e-08 61.6 158 30.4
PSO732G0092 Papaver somniferum HOM05D008403 ORTHO05D010317 1.0e-07 61.2 123 34.1
Psat3g039600 Pisum sativum HOM05D004894 ORTHO05D005689 1.0e-07 61.2 166 25.9
Ca_10673_v3 Cicer arietinum L. HOM05D004894 ORTHO05D005689 2.3e-07 60.1 131 32.8
AT5G64620 Arabidopsis thaliana HOM05D004113 ORTHO05D005233 3.9e-07 59.3 161 28.0
PGR004G1348 Punica granatum HOM05D008403 ORTHO05D010317 3.9e-07 59.3 150 32.0
Ciclev10002604m.g Citrus clementina HOM05D004113 ORTHO05D005233 5.1e-07 58.9 151 27.2
MBI18_g04554_MAGBIO Magnolia biondii HOM05D004113 ORTHO05D005233 5.1e-07 58.9 85 34.1
PGR004G2081 Punica granatum HOM05D003146 ORTHO05D001819 5.1e-07 58.9 131 28.2
AL8G42030 Arabidopsis lyrata HOM05D004113 ORTHO05D005233 6.6e-07 58.5 120 29.2
Dinv29549 Davidia involucrata HOM05D003146 ORTHO05D001819 6.6e-07 58.5 148 28.4
PSO541G3674 Papaver somniferum HOM05D008403 ORTHO05D010317 6.6e-07 58.5 125 34.4
MBI09_g40718_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D001207 8.7e-07 58.2 161 24.2
Nitab4.5_0023902g0010 Nicotiana tabacum HOM05D011489 ORTHO05D014472 8.7e-07 58.2 154 27.3
Rhsim02G0087900 Rhododendron simsii HOM05D008403 ORTHO05D010317 8.7e-07 58.2 120 33.3
MBI11_g08231_MAGBIO Magnolia biondii HOM05D020019 ORTHO05D001207 1.1e-06 57.8 109 29.4
TAR636G0184 Trochodendron aralioides HOM05D004113 ORTHO05D005233 1.1e-06 57.8 94 31.9
TAR636G1790 Trochodendron aralioides HOM05D004113 ORTHO05D005233 1.1e-06 57.8 94 31.9
arahy.Tifrunner.gnm1.ann1.VH20NJ Arachis hypogaea HOM05D004894 ORTHO05D005689 1.5e-06 57.4 140 27.9
Nn3g20356 Nelumbo nucifera HOM05D003146 ORTHO05D001819 1.5e-06 57.4 96 34.4
PSO675G4416 Papaver somniferum HOM05D008403 ORTHO05D010317 1.5e-06 57.4 107 37.4
Lj6g0020324 Lotus japonicus HOM05D008403 ORTHO05D010317 1.9e-06 57.0 114 31.6
Oeu016936.1 Olea europaea HOM05D008403 ORTHO05D010317 1.9e-06 57.0 156 28.2
TAR636G3366 Trochodendron aralioides HOM05D004113 ORTHO05D005233 1.9e-06 57.0 94 31.9
PSO081G0055 Papaver somniferum HOM05D001445 ORTHO05D001261 2.5e-06 56.6 138 27.5
PSO832G2548 Papaver somniferum HOM05D004113 ORTHO05D001207 2.5e-06 56.6 120 28.3
Potri.013G012800 Populus trichocarpa HOM05D010921 ORTHO05D013092 2.5e-06 56.6 134 29.1
Aqoxy4G02379 Aquilegia oxysepala HOM05D008403 ORTHO05D010317 3.3e-06 56.2 165 29.7
Nn1g00664 Nelumbo nucifera HOM05D001445 ORTHO05D001261 3.3e-06 56.2 137 26.3
Psat0s6062g0040 Pisum sativum HOM05D004894 ORTHO05D005689 3.3e-06 56.2 139 28.8
THA.LOC104824471 Tarenaya hassleriana HOM05D001445 ORTHO05D001261 3.3e-06 56.2 130 31.5
Atru.chr2.427 Acer truncatum HOM05D008403 ORTHO05D010317 4.3e-06 55.8 121 32.2
Gohir.D10G180600 Gossypium hirsutum HOM05D001578 ORTHO05D001207 4.3e-06 55.8 142 26.8
Gorai.011G202100 Gossypium raimondii HOM05D001578 ORTHO05D001207 4.3e-06 55.8 142 26.8
QL06p012819 Quercus lobata HOM05D001578 ORTHO05D001207 4.3e-06 55.8 128 28.1
TAR629G3049 Trochodendron aralioides HOM05D001445 ORTHO05D001261 4.3e-06 55.8 104 32.7
Actinidia04549 Actinidia chinensis HOM05D008403 ORTHO05D010317 5.6e-06 55.5 116 35.3
AL1G65050 Arabidopsis lyrata HOM05D008727 ORTHO05D011379 5.6e-06 55.5 147 23.1
Haze_03215 Corylus avellana HOM05D003146 ORTHO05D001819 5.6e-06 55.5 112 33.0
Sp2g27680 Schrenkiella parvula HOM05D004113 ORTHO05D005233 5.6e-06 55.5 118 30.5
TAR633G1609 Trochodendron aralioides HOM05D004113 ORTHO05D005233 5.6e-06 55.5 120 29.2
Atru.chr2.423 Acer truncatum HOM05D008403 ORTHO05D010317 7.3e-06 55.1 145 32.4
Actinidia18487 Actinidia chinensis HOM05D003146 ORTHO05D001819 7.3e-06 55.1 113 31.9
MSTRG.1100 Avicennia marina HOM05D011489 ORTHO05D014472 7.3e-06 55.1 187 26.7
Manes.03G207000 Manihot esculenta HOM05D001578 ORTHO05D001207 7.3e-06 55.1 123 29.3
TAR627G0557 Trochodendron aralioides HOM05D008403 ORTHO05D010317 7.3e-06 55.1 95 31.6
HPP92_012697 Vanilla planifolia HOM05D004113 ORTHO05D005233 7.3e-06 55.1 136 30.9
CARHR278590 Cardamine hirsuta HOM05D004113 ORTHO05D005233 9.6e-06 54.7 118 28.8
Dinv29548 Davidia involucrata HOM05D003146 ORTHO05D001819 9.6e-06 54.7 126 27.8
Nn1g00654 Nelumbo nucifera HOM05D001445 ORTHO05D001261 9.6e-06 54.7 104 30.8
Nitab4.5_0000099g0040 Nicotiana tabacum HOM05D011489 ORTHO05D014472 9.6e-06 54.7 171 26.3
PSO732G0597 Papaver somniferum HOM05D008403 ORTHO05D010317 9.6e-06 54.7 142 28.9
Rhsim07G0095800 Rhododendron simsii HOM05D003146 ORTHO05D001819 9.6e-06 54.7 106 34.9
Sabra05G0148700 Salix brachista HOM05D010921 ORTHO05D013092 9.6e-06 54.7 132 30.3
TAR375G1152 Trochodendron aralioides HOM05D001445 ORTHO05D001261 9.6e-06 54.7 140 28.6
HPP92_012690 Vanilla planifolia HOM05D004113 ORTHO05D005233 9.6e-06 54.7 136 30.9


User provided reference genes

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