Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018287 Carpinus fangiana HOM05D005519 ORTHO05D006423 4.2e-83 311.6 194 100.0
Haze_17800 Corylus avellana HOM05D005519 ORTHO05D006423 1.7e-63 246.5 194 86.6
CiPaw.15G012900 Carya illinoinensis HOM05D005519 ORTHO05D006423 1.4e-62 243.4 194 77.8
Phvul.004G091300 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 9.4e-59 230.7 196 70.4
Glyma.20G169500 Glycine max HOM05D005519 ORTHO05D006423 2.1e-58 229.6 197 68.0
QL02p037831 Quercus lobata HOM05D005519 ORTHO05D006423 3.6e-58 228.8 194 79.9
Glyma.10G222100 Glycine max HOM05D005519 ORTHO05D006423 1.4e-57 226.9 197 67.5
QL02p038173 Quercus lobata HOM05D005519 ORTHO05D006423 1.2e-56 223.8 196 79.6
Psat6g190880 Pisum sativum HOM05D005519 ORTHO05D006423 2.6e-56 222.6 196 66.8
CiPaw.16G008800 Carya illinoinensis HOM05D005519 ORTHO05D006423 5.7e-56 221.5 194 78.4
Glyma.16G163800 Glycine max HOM05D005519 ORTHO05D006423 5.7e-56 221.5 201 65.7
VMungo0720G0436 Vigna mungo HOM05D005519 ORTHO05D006423 7.5e-56 221.1 197 67.5
Glyma.02G079400 Glycine max HOM05D005519 ORTHO05D006423 9.8e-56 220.7 199 67.3
VMungo0464G1678 Vigna mungo HOM05D005519 ORTHO05D006423 1.8e-54 216.5 198 71.7
Phvul.007G083000 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 2.4e-54 216.1 197 68.5
TPR.G17016 Trifolium pratense HOM05D005519 ORTHO05D006423 4.1e-54 215.3 196 69.4
Ca_10667_v3 Cicer arietinum L. HOM05D005519 ORTHO05D006423 5.4e-54 214.9 195 68.7
Lalb_Chr03g0035541 Lupinus albus HOM05D005519 ORTHO05D006423 1.2e-53 213.8 197 64.0
TWI32G0061 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 4.5e-53 211.8 194 68.6
Medtr1g098280 Medicago truncatula HOM05D005519 ORTHO05D006423 1.0e-52 210.7 196 66.8
Potri.005G196100 Populus trichocarpa HOM05D005519 ORTHO05D006423 5.0e-52 208.4 195 71.8
Lalb_Chr19g0130091 Lupinus albus HOM05D005519 ORTHO05D006423 1.5e-51 206.8 197 62.4
Hma1.2p1_0358F.1_g134710 Hydrangea macrophylla HOM05D005519 ORTHO05D006423 3.3e-51 205.7 196 71.9
Potri.002G065000 Populus trichocarpa HOM05D005519 ORTHO05D006423 9.5e-51 204.1 195 67.7
Manes.02G182800 Manihot esculenta HOM05D005519 ORTHO05D006423 3.6e-50 202.2 196 75.0
ClCG08G008840 Citrullus lanatus HOM05D005519 ORTHO05D006423 4.7e-50 201.8 197 73.6
arahy.Tifrunner.gnm1.ann1.8F5AL7 Arachis hypogaea HOM05D005519 ORTHO05D006423 4.0e-49 198.7 203 63.5
Cpa.g.sc49.79 Carica papaya HOM05D005519 ORTHO05D006423 4.0e-49 198.7 197 71.1
Lj5g0019555 Lotus japonicus HOM05D005519 ORTHO05D006423 4.0e-49 198.7 199 65.3
PGSC0003DMG400018793 Solanum tuberosum HOM05D005519 ORTHO05D006423 4.0e-49 198.7 150 72.0
arahy.Tifrunner.gnm1.ann1.SKG6R6 Arachis hypogaea HOM05D005519 ORTHO05D006423 6.8e-49 198.0 203 63.1
Manes.18G094400 Manihot esculenta HOM05D005519 ORTHO05D006423 6.8e-49 198.0 194 70.1
Sed0015682 Sechium edule HOM05D005519 ORTHO05D006423 2.0e-48 196.4 190 72.6
Peaxi162Scf00160g01746 Petunia axillaris HOM05D005519 ORTHO05D006423 2.6e-48 196.1 196 64.3
Lj2g0026694 Lotus japonicus HOM05D005519 ORTHO05D006423 5.7e-48 194.9 194 63.4
PGSC0003DMG400025068 Solanum tuberosum HOM05D005519 ORTHO05D006423 5.7e-48 194.9 191 66.5
Nitab4.5_0001103g0040 Nicotiana tabacum HOM05D005519 ORTHO05D006423 9.8e-48 194.1 196 64.8
Sabra05G0149500 Salix brachista HOM05D005519 ORTHO05D006423 9.8e-48 194.1 195 71.8
Gohir.A05G246000 Gossypium hirsutum HOM05D005519 ORTHO05D006423 1.7e-47 193.4 154 76.6
CANSAT25G1666 Cannabis sativa HOM05D005519 ORTHO05D006423 2.9e-47 192.6 203 66.0
Sabra02G0051900 Salix brachista HOM05D005519 ORTHO05D006423 2.9e-47 192.6 198 61.1
Dinv25895 Davidia involucrata HOM05D005519 ORTHO05D006423 3.7e-47 192.2 196 69.9
TAR381G0167 Trochodendron aralioides HOM05D005519 ORTHO05D006423 3.7e-47 192.2 197 67.0
Cc10_g15180 Coffea canephora HOM05D005519 ORTHO05D006423 6.4e-47 191.4 196 68.4
TWI34G0476 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 8.3e-47 191.0 194 68.6
CAN.G26.8 Capsicum annuum HOM05D005519 ORTHO05D006423 1.4e-46 190.3 154 72.1
Rhsim11G0087200 Rhododendron simsii HOM05D005519 ORTHO05D006423 1.4e-46 190.3 156 71.8
Sopen04g027910 Solanum pennellii HOM05D005519 ORTHO05D006423 1.4e-46 190.3 191 63.4
Prupe.8G039900 Prunus persica HOM05D005519 ORTHO05D006423 1.8e-46 189.9 199 69.8
Solyc12g056620.2 Solanum lycopersicum HOM05D005519 ORTHO05D006423 3.2e-46 189.1 149 69.1
Sopen12g029280 Solanum pennellii HOM05D005519 ORTHO05D006423 3.2e-46 189.1 149 68.5
Thecc.08G158600 Theobroma cacao HOM05D005519 ORTHO05D006423 4.1e-46 188.7 195 70.8
CsaV3_6G005050 Cucumis sativus L. HOM05D005519 ORTHO05D006423 5.4e-46 188.3 196 69.4
PGR042G3808 Punica granatum HOM05D005519 ORTHO05D006423 5.4e-46 188.3 198 65.2
CAN.G495.8 Capsicum annuum HOM05D005519 ORTHO05D006423 9.2e-46 187.6 191 63.9
Duzib116G0927 Durio zibethinus HOM05D005519 ORTHO05D006423 1.2e-45 187.2 155 71.0
Gohir.D02G068600 Gossypium hirsutum HOM05D005519 ORTHO05D006423 1.6e-45 186.8 195 66.2
FvH4_2g13070 Fragaria vesca HOM05D005519 ORTHO05D006423 3.5e-45 185.7 194 70.1
Nitab4.5_0002812g0030 Nicotiana tabacum HOM05D005519 ORTHO05D006423 4.6e-45 185.3 143 77.6
THA.LOC104806763 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 4.6e-45 185.3 195 66.2
Gohir.D05G247500 Gossypium hirsutum HOM05D005519 ORTHO05D006423 1.0e-44 184.1 154 73.4
Nitab4.5_0000872g0010 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.0e-44 184.1 154 70.8
RcHm_v2.0_Chr6g0274331 Rosa chinensis HOM05D005519 ORTHO05D006423 1.0e-44 184.1 200 67.5
Solyc04g071930.4 Solanum lycopersicum HOM05D005519 ORTHO05D006423 1.7e-44 183.3 191 62.8
Lsat_1_v5_gn_6_101660 Lactuca sativa HOM05D005519 ORTHO05D006423 2.3e-44 183.0 153 69.9
Nn5g28816 Nelumbo nucifera HOM05D005519 ORTHO05D006423 2.3e-44 183.0 156 69.9
CSS0002205 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 3.0e-44 182.6 195 70.3
Gorai.009G258300 Gossypium raimondii HOM05D005519 ORTHO05D006423 3.0e-44 182.6 154 72.7
Lsat_1_v5_gn_9_42101 Lactuca sativa HOM05D005519 ORTHO05D006423 3.0e-44 182.6 152 69.7
MD05G1032800 Malus domestica HOM05D005519 ORTHO05D006423 3.0e-44 182.6 199 61.3
unitig_26.g9895 Utricularia gibba HOM05D005519 ORTHO05D006423 3.0e-44 182.6 155 69.7
AL1G48440 Arabidopsis lyrata HOM05D005519 ORTHO05D006423 3.9e-44 182.2 155 72.3
Carub.0001s3208 Capsella rubella HOM05D005519 ORTHO05D006423 3.9e-44 182.2 195 68.2
Aa31LG6G8220 Aethionema arabicum HOM05D005519 ORTHO05D006423 5.0e-44 181.8 195 62.1
DCAR_001160 Daucus carota HOM05D005519 ORTHO05D006423 5.0e-44 181.8 193 56.5
Gorai.005G077500 Gossypium raimondii HOM05D005519 ORTHO05D006423 1.1e-43 180.6 195 64.1
Peaxi162Scf00360g00028 Petunia axillaris HOM05D005519 ORTHO05D006423 1.5e-43 180.3 144 74.3
AT1G34000 Arabidopsis thaliana HOM05D005519 ORTHO05D006423 1.9e-43 179.9 195 63.6
Lj7A382T71 Lonicera japonica HOM05D005519 ORTHO05D006423 1.9e-43 179.9 155 69.7
Nitab4.5_0000099g0170 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.9e-43 179.9 146 75.3
MSTRG.25301 Avicennia marina HOM05D005519 ORTHO05D006423 2.5e-43 179.5 158 72.8
Duzib093G1843 Durio zibethinus HOM05D005519 ORTHO05D006423 3.3e-43 179.1 198 59.6
Lj4A703G50 Lonicera japonica HOM05D005519 ORTHO05D006423 3.3e-43 179.1 155 71.6
vmacro01488 Vaccinium macrocarpon HOM05D005519 ORTHO05D006423 4.3e-43 178.7 202 58.9
BraA09t38789Z Brassica rapa HOM05D005519 ORTHO05D006423 5.6e-43 178.3 195 63.6
Thhalv10008704m.g Eutrema salsugineum HOM05D005519 ORTHO05D006423 5.6e-43 178.3 154 68.8
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 5.6e-43 178.3 140 72.1
SGA_v2.0_scaffold108G30869 Striga asiatica HOM05D005519 ORTHO05D006423 5.6e-43 178.3 142 76.8
THA.LOC104825113 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 5.6e-43 178.3 156 70.5
BcaB04g17909 Brassica carinata HOM05D005519 ORTHO05D006423 7.3e-43 177.9 195 59.5
MD10G1033800 Malus domestica HOM05D005519 ORTHO05D006423 7.3e-43 177.9 198 64.6
Sc26g0002910 Simmondsia chinensis HOM05D005519 ORTHO05D006423 1.2e-42 177.2 195 57.4
MBI04_g08940_MAGBIO Magnolia biondii HOM05D005519 ORTHO05D006423 2.1e-42 176.4 144 71.5
BolC6t36346H Brassica oleracea HOM05D005519 ORTHO05D006423 2.8e-42 176.0 158 70.9
BcaC08g43825 Brassica carinata HOM05D005519 ORTHO05D006423 6.2e-42 174.9 158 70.3
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 4.0e-41 172.2 140 70.7
A09p32470 Brassica napus HOM05D005519 ORTHO05D006423 5.2e-41 171.8 195 62.1
CARHR033380 Cardamine hirsuta HOM05D005519 ORTHO05D006423 5.2e-41 171.8 195 64.1
A08p08390 Brassica napus HOM05D005519 ORTHO05D006423 8.9e-41 171.0 195 59.5
BraA08t32855Z Brassica rapa HOM05D005519 ORTHO05D006423 8.9e-41 171.0 195 59.5
BcaB07g33022 Brassica carinata HOM05D005519 ORTHO05D006423 2.6e-40 169.5 194 61.3
PSO541G5828 Papaver somniferum HOM05D005519 ORTHO05D006423 2.6e-40 169.5 199 58.3
C06p12090 Brassica napus HOM05D005519 ORTHO05D006423 4.4e-40 168.7 195 62.1
Atru.chr13.2018 Acer truncatum HOM05D005519 ORTHO05D006423 9.8e-40 167.5 196 62.2
BolC8t47881H Brassica oleracea HOM05D005519 ORTHO05D006423 9.8e-40 167.5 194 57.7
Migut.C00964 Erythranthe guttata HOM05D005519 ORTHO05D006423 9.8e-40 167.5 198 57.1
Sed0018725 Sechium edule HOM05D005519 ORTHO05D006423 9.8e-40 167.5 157 63.1
Ciclev10002625m.g Citrus clementina HOM05D005519 ORTHO05D006423 6.4e-39 164.9 195 60.5
Migut.N03201 Erythranthe guttata HOM05D005519 ORTHO05D006423 6.4e-39 164.9 149 68.5
FAN27G0467 Fragaria x ananassa HOM05D005519 ORTHO05D006423 6.4e-39 164.9 185 58.9
HPP92_000679 Vanilla planifolia HOM05D005519 ORTHO05D006423 5.4e-38 161.8 155 58.7
Ah.05g168160 Amaranthus hybridus HOM05D005519 ORTHO05D006423 7.0e-38 161.4 199 55.8
ATR0580G316 Amborella trichopoda HOM05D005519 ORTHO05D006423 9.2e-38 161.0 196 57.7
PSO675G0400 Papaver somniferum HOM05D005519 ORTHO05D006423 1.6e-37 160.2 200 61.0
GSVIVG01034578001 Vitis vinifera HOM05D005519 ORTHO05D006423 1.6e-37 160.2 84 92.9
CDE04G2354 Ceratophyllum demersum HOM05D005519 ORTHO05D006423 3.5e-37 159.1 195 53.8
HanXRQChr11g0320251 Helianthus annuus HOM05D005519 ORTHO05D006423 4.6e-37 158.7 193 57.0
Zm00001eb160790 Zea mays HOM05D005519 ORTHO05D006423 7.8e-37 157.9 220 47.7
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 1.3e-36 157.1 131 66.4
Sp1g29260 Schrenkiella parvula HOM05D005519 ORTHO05D006423 1.7e-36 156.8 189 55.0
Zm00001eb357520 Zea mays HOM05D005519 ORTHO05D006423 8.6e-36 154.5 218 46.8
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 2.5e-35 152.9 94 83.0
Nn1g06007 Nelumbo nucifera HOM05D005519 ORTHO05D006423 2.1e-34 149.8 138 65.9
MSTRG.1105 Avicennia marina HOM05D000084 ORTHO05D006423 2.3e-33 146.4 180 55.0
AUR62034898 Chenopodium quinoa HOM05D005519 ORTHO05D006423 4.1e-30 135.6 75 88.0
Os01g0589800 Oryza sativa ssp. japonica HOM05D005519 ORTHO05D006423 7.1e-30 134.8 70 91.4
COL.COLO4_03361 Corchorus olitorius HOM05D005519 ORTHO05D006423 2.5e-27 126.3 69 81.2
Dinv41044 Davidia involucrata HOM05D005519 ORTHO05D006423 9.5e-27 124.4 120 70.8
Actinidia17771 Actinidia chinensis HOM05D005519 ORTHO05D006423 3.4e-24 115.9 110 60.9
AagrBONN_evm.TU.Sc2ySwM_117.629 Anthoceros agrestis HOM05D005519 ORTHO05D006423 3.4e-24 115.9 155 51.0
Mapoly0065s0010 Marchantia polymorpha HOM05D005519 ORTHO05D006423 1.4e-22 110.5 82 63.4
SMO139G0065 Selaginella moellendorffii HOM05D005519 ORTHO05D006423 4.1e-22 109.0 134 52.2
A05p24090 Brassica napus HOM05D011378 ORTHO05D006423 9.2e-22 107.8 67 80.6
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 2.1e-21 106.7 72 79.2
Oeu051280.1 Olea europaea HOM05D005519 ORTHO05D006423 7.8e-21 104.8 154 53.2
MELO3C029825.2 Cucumis melo HOM05D005519 ORTHO05D006423 1.0e-20 104.4 173 59.0
Hund30143 Selenicereus undatus HOM05D005519 ORTHO05D006423 1.1e-19 100.9 124 57.3
Cre06.g251150 Chlamydomonas reinhardtii HOM05D005519 ORTHO05D006423 1.4e-17 94.0 82 56.1
CSS0025090 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 2.4e-17 93.2 78 74.4
MCO05G699 Micromonas commoda HOM05D005519 ORTHO05D006423 2.4e-17 93.2 80 52.5
CBR_g32244 Chara braunii HOM05D005519 ORTHO05D006423 3.1e-17 92.8 153 39.9
Eucgr.L00901 Eucalyptus grandis HOM05D005519 ORTHO05D006423 3.4e-16 89.4 165 50.3
PRCOL_00003386 Prasinoderma coloniale HOM05D005519 ORTHO05D006423 1.8e-09 67.0 67 52.2
Pp3c1_8300 Physcomitrium patens HOM05D005519 ORTHO05D006423 1.1e-06 57.8 39 59.0


User provided reference genes

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