Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018264 Carpinus fangiana HOM05D007372 ORTHO05D009318 7.6e-155 550.4 273 100.0
Haze_17824 Corylus avellana HOM05D007372 ORTHO05D009318 2.7e-136 488.8 273 90.5
CiPaw.15G011400 Carya illinoinensis HOM05D007372 ORTHO05D009318 2.1e-80 303.1 293 60.1
QL02p037053 Quercus lobata HOM05D007372 ORTHO05D009318 1.5e-62 243.8 284 54.9
QL02p036533 Quercus lobata HOM05D007372 ORTHO05D009318 1.3e-53 214.2 257 53.3
Potri.002G062800 Populus trichocarpa HOM05D007372 ORTHO05D009318 3.0e-50 203.0 281 48.4
Manes.02G185100 Manihot esculenta HOM05D007372 ORTHO05D009318 3.1e-47 193.0 276 46.4
Sabra02G0050700 Salix brachista HOM05D007372 ORTHO05D009318 5.2e-47 192.2 266 47.0
Duzib093G1977 Durio zibethinus HOM05D007372 ORTHO05D009318 2.6e-46 189.9 306 41.2
arahy.Tifrunner.gnm1.ann1.1F4W04 Arachis hypogaea HOM05D007372 ORTHO05D009318 3.4e-46 189.5 281 44.8
Dinv02471 Davidia involucrata HOM05D007372 ORTHO05D009318 5.8e-46 188.7 204 52.0
PGR042G0625 Punica granatum HOM05D007372 ORTHO05D009318 7.6e-46 188.3 273 45.1
arahy.Tifrunner.gnm1.ann1.CL5RXG Arachis hypogaea HOM05D007372 ORTHO05D009318 4.9e-45 185.7 280 43.9
Gohir.A02G062200 Gossypium hirsutum HOM05D007372 ORTHO05D009318 1.9e-44 183.7 278 45.7
Gorai.005G076700 Gossypium raimondii HOM05D007372 ORTHO05D009318 5.4e-44 182.2 286 44.4
Gohir.D02G067900 Gossypium hirsutum HOM05D007372 ORTHO05D009318 1.2e-43 181.0 286 44.1
Eucgr.F02675 Eucalyptus grandis HOM05D007372 ORTHO05D009318 2.1e-43 180.3 269 43.5
Nitab4.5_0007403g0010 Nicotiana tabacum HOM05D007372 ORTHO05D009318 7.8e-43 178.3 305 39.7
Glyma.02G077500 Glycine max HOM05D007372 ORTHO05D009318 8.7e-42 174.9 278 41.0
VMungo0464G0612 Vigna mungo HOM05D007372 ORTHO05D009318 3.3e-41 172.9 273 40.7
Psat0ss32450g0040 Pisum sativum HOM05D007372 ORTHO05D009318 4.3e-41 172.6 279 39.8
Phvul.004G088900 Phaseolus vulgaris HOM05D007372 ORTHO05D009318 5.6e-41 172.2 273 41.8
Prupe.8G043800 Prunus persica HOM05D007372 ORTHO05D009318 7.3e-41 171.8 285 40.7
Sed0016879 Sechium edule HOM05D007372 ORTHO05D009318 2.8e-40 169.9 312 38.5
ClCG08G007220 Citrullus lanatus HOM05D007372 ORTHO05D009318 3.6e-40 169.5 324 38.9
Solyc04g072040.1 Solanum lycopersicum HOM05D007372 ORTHO05D009318 4.8e-40 169.1 318 37.7
Nn5g28866 Nelumbo nucifera HOM05D007372 ORTHO05D009318 6.2e-40 168.7 274 41.6
Lalb_Chr19g0129991 Lupinus albus HOM05D007372 ORTHO05D009318 1.8e-39 167.2 281 40.2
CAN.G1183.23 Capsicum annuum HOM05D007372 ORTHO05D009318 5.3e-39 165.6 268 39.2
MD05G1035800 Malus domestica HOM05D007372 ORTHO05D009318 5.3e-39 165.6 269 40.5
Sopen04g028150 Solanum pennellii HOM05D007372 ORTHO05D009318 3.4e-38 162.9 282 40.1
Migut.C00154 Erythranthe guttata HOM05D007372 ORTHO05D009318 5.8e-38 162.2 316 36.4
Cpa.g.sc26.120 Carica papaya HOM05D007372 ORTHO05D009318 9.9e-38 161.4 274 39.1
BolC6t39633H Brassica oleracea HOM05D007372 ORTHO05D009318 2.9e-37 159.8 283 39.6
CANSAT25G1084 Cannabis sativa HOM05D007372 ORTHO05D009318 2.9e-37 159.8 291 40.9
C06p45810 Brassica napus HOM05D007372 ORTHO05D009318 8.4e-37 158.3 273 39.6
Carub.0002s1852 Capsella rubella HOM05D007372 ORTHO05D009318 3.2e-36 156.4 282 38.3
TWI60G0690 Tripterygium wilfordii HOM05D007372 ORTHO05D009318 3.2e-36 156.4 273 41.0
Sp5g26780 Schrenkiella parvula HOM05D007372 ORTHO05D009318 4.2e-36 156.0 283 37.8
TPR.G19684 Trifolium pratense HOM05D007372 ORTHO05D009318 5.4e-36 155.6 281 39.9
Lj2g0008181 Lotus japonicus HOM05D007372 ORTHO05D009318 7.1e-36 155.2 280 36.1
Actinidia17763 Actinidia chinensis HOM05D007372 ORTHO05D009318 1.2e-35 154.5 310 36.8
Ca_04659_v3 Cicer arietinum L. HOM05D007372 ORTHO05D009318 1.6e-35 154.1 268 38.8
THA.LOC104809747 Tarenaya hassleriana HOM05D007372 ORTHO05D009318 1.6e-35 154.1 279 36.6
TAR381G1194 Trochodendron aralioides HOM05D007372 ORTHO05D009318 2.7e-35 153.3 262 40.5
CsaV3_6G004890 Cucumis sativus L. HOM05D007372 ORTHO05D009318 4.6e-35 152.5 320 37.2
Aa31LG4G8880 Aethionema arabicum HOM05D007372 ORTHO05D009318 1.0e-34 151.4 291 37.5
BcaC08g46602 Brassica carinata HOM05D007372 ORTHO05D009318 1.7e-34 150.6 275 39.6
AT1G71760 Arabidopsis thaliana HOM05D007372 ORTHO05D009318 5.1e-34 149.1 284 34.9
Aqoxy6G00438 Aquilegia oxysepala HOM05D007372 ORTHO05D009318 1.5e-33 147.5 278 37.1
A07p37910 Brassica napus HOM05D007372 ORTHO05D009318 1.5e-33 147.5 273 39.6
AL2G31330 Arabidopsis lyrata HOM05D007372 ORTHO05D009318 1.9e-33 147.1 283 36.4
COL.COLO4_24577 Corchorus olitorius HOM05D007372 ORTHO05D009318 7.3e-33 145.2 180 50.6
unitig_46.g18009 Utricularia gibba HOM05D007372 ORTHO05D009318 7.3e-33 145.2 276 37.0
Lsat_1_v5_gn_9_42440 Lactuca sativa HOM05D007372 ORTHO05D009318 1.3e-32 144.4 253 40.3
Rhsim06G0093000 Rhododendron simsii HOM05D007372 ORTHO05D009318 1.3e-32 144.4 304 37.2
Nitab4.5_0004252g0050 Nicotiana tabacum HOM05D007372 ORTHO05D009318 6.2e-32 142.1 285 36.1
SalBow7G3614 Salvia bowleyana HOM05D007372 ORTHO05D009318 1.8e-31 140.6 268 37.3
PSO541G3596 Papaver somniferum HOM05D007372 ORTHO05D009318 2.4e-31 140.2 311 33.4
TPR.G19681 Trifolium pratense HOM05D007372 ORTHO05D009318 2.4e-31 140.2 278 37.1
BraA07t31356Z Brassica rapa HOM05D007372 ORTHO05D009318 9.0e-31 138.3 275 36.4
PSO675G2246 Papaver somniferum HOM05D007372 ORTHO05D009318 1.5e-30 137.5 290 34.8
vmacro22649 Vaccinium macrocarpon HOM05D007372 ORTHO05D009318 1.3e-29 134.4 326 32.5
Sc26g0002770 Simmondsia chinensis HOM05D007372 ORTHO05D009318 2.2e-29 133.7 261 37.9
MELO3C019965.2 Cucumis melo HOM05D007372 ORTHO05D009318 3.8e-29 132.9 303 33.7
Thhalv10019840m.g Eutrema salsugineum HOM05D007372 ORTHO05D009318 3.8e-29 132.9 172 45.3
AUR62034913 Chenopodium quinoa HOM05D007372 ORTHO05D009318 6.4e-29 132.1 301 35.5
Cc10_g06440 Coffea canephora HOM05D007372 ORTHO05D009318 6.4e-29 132.1 144 51.4
Hund17499 Selenicereus undatus HOM05D007372 ORTHO05D009318 1.4e-28 131.0 292 35.6
Hma1.2p1_0678F.1_g202150 Hydrangea macrophylla HOM05D007372 ORTHO05D009318 5.4e-28 129.0 115 57.4
ECA232G4628 Erigeron canadensis HOM05D007372 ORTHO05D009318 1.2e-27 127.9 307 34.5
Ah.05g168260 Amaranthus hybridus HOM05D007372 ORTHO05D009318 1.6e-27 127.5 300 34.0
MBI01_g29001_MAGBIO Magnolia biondii HOM05D007372 ORTHO05D009318 3.5e-27 126.3 267 33.3
vmacro22532 Vaccinium macrocarpon HOM05D007372 ORTHO05D009318 6.0e-27 125.6 320 31.9
FAN24G0386 Fragaria x ananassa HOM05D023021 ORTHO05D025344 1.1e-25 121.3 283 32.2
SGA_v2.0_scaffold82G26208 Striga asiatica HOM05D007372 ORTHO05D009318 1.6e-24 117.5 311 29.9
Psat6g060160 Pisum sativum HOM05D007372 ORTHO05D009318 2.1e-24 117.1 146 47.3
CARHR291030 Cardamine hirsuta HOM05D007372 ORTHO05D009318 2.8e-24 116.7 173 42.8
RcHm_v2.0_Chr6g0273891 Rosa chinensis HOM05D007372 ORTHO05D009318 2.8e-24 116.7 117 55.6
Peaxi162Scf00360g00916 Petunia axillaris HOM05D007372 ORTHO05D009318 1.1e-23 114.8 287 32.8
Ciclev10001857m.g Citrus clementina HOM05D007372 ORTHO05D009318 1.4e-23 114.4 240 36.2
ATR1120G103 Amborella trichopoda HOM05D007372 ORTHO05D009318 1.8e-23 114.0 260 31.9
FvH4_2g12850 Fragaria vesca HOM05D007372 ORTHO05D009318 1.8e-23 114.0 112 54.5
GSVIVG01013700001 Vitis vinifera HOM05D007372 ORTHO05D009318 5.3e-23 112.5 153 43.1
HPP92_004582 Vanilla planifolia HOM05D007372 ORTHO05D009318 1.0e-21 108.2 139 46.8
MBI01_g42373_MAGBIO Magnolia biondii HOM05D007372 ORTHO05D009318 1.7e-21 107.5 203 38.4
MSTRG.969 Avicennia marina HOM05D007372 ORTHO05D009318 3.8e-21 106.3 106 52.8
Medtr1191s0010 Medicago truncatula HOM05D007372 ORTHO05D009318 6.5e-21 105.5 116 51.7
EL10Ac1g01626 Beta vulgaris HOM05D007372 ORTHO05D009318 2.1e-19 100.5 294 31.6
Os01g0716300 Oryza sativa ssp. japonica HOM05D007372 ORTHO05D009318 8.7e-18 95.1 137 43.1
Oeu046069.1 Olea europaea HOM05D007372 ORTHO05D009318 6.2e-16 89.0 151 41.1
Zm00001eb361480 Zea mays HOM05D007372 ORTHO05D009318 6.9e-15 85.5 134 41.8
Medtr0571s0030 Medicago truncatula HOM05D007372 ORTHO05D009318 1.5e-14 84.3 110 45.5
Mapoly0147s0022 Marchantia polymorpha HOM05D007372 ORTHO05D009318 1.7e-13 80.9 133 39.1
PGSC0003DMG400025053 Solanum tuberosum HOM05D007372 ORTHO05D009318 3.2e-12 76.6 223 33.2
HanXRQChr11g0343631 Helianthus annuus HOM05D007372 ORTHO05D009318 4.2e-12 76.3 125 40.8
AagrBONN_evm.TU.Sc2ySwM_117.786 Anthoceros agrestis HOM05D007372 ORTHO05D009318 7.1e-12 75.5 231 26.8
Ah.05g168300 Amaranthus hybridus HOM05D007372 ORTHO05D009318 1.3e-10 71.2 231 31.2
Rhsim04G0161000 Rhododendron simsii HOM05D007372 ORTHO05D009318 6.7e-10 68.9 70 50.0
SpUn0095_0010 Schrenkiella parvula HOM05D007372 ORTHO05D009318 1.1e-09 68.2 209 31.1
FAN20G1411 Fragaria x ananassa HOM05D023021 ORTHO05D025344 9.7e-09 65.1 143 32.9
Rhsim06G0189600 Rhododendron simsii HOM05D007372 ORTHO05D009318 3.7e-08 63.2 76 42.1
FvH4_2g12851 Fragaria vesca HOM05D023021 ORTHO05D025344 6.3e-08 62.4 143 32.2
SMO304G0033 Selaginella moellendorffii HOM05D007372 ORTHO05D009318 1.5e-06 57.8 116 32.8
DCAR_014326 Daucus carota HOM05D007372 ORTHO05D009318 2.0e-06 57.4 209 29.2
RcHm_v2.0_Chr6g0273881 Rosa chinensis HOM05D023021 ORTHO05D025344 2.0e-06 57.4 90 36.7


User provided reference genes

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