Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018254 Carpinus fangiana HOM05D005529 ORTHO05D006800 8.8e-134 480.3 250 100.0
Haze_17835 Corylus avellana HOM05D005529 ORTHO05D006800 1.4e-131 473.0 256 93.0
Haze_17841 Corylus avellana HOM05D005529 ORTHO05D006800 1.4e-131 473.0 256 93.0
MD05G1037000 Malus domestica HOM05D005529 ORTHO05D006800 1.5e-125 453.0 256 88.7
Prupe.8G045100 Prunus persica HOM05D005529 ORTHO05D006800 2.8e-124 448.7 256 87.9
CiPaw.15G011100 Carya illinoinensis HOM05D005529 ORTHO05D006800 1.4e-123 446.4 254 87.4
QL02p036323 Quercus lobata HOM05D005529 ORTHO05D006800 5.4e-123 444.5 255 86.7
QL02p036742 Quercus lobata HOM05D005529 ORTHO05D006800 5.4e-123 444.5 255 86.7
CANSAT25G1808 Cannabis sativa HOM05D005529 ORTHO05D006800 2.0e-122 442.6 256 85.2
RcHm_v2.0_Chr6g0273541 Rosa chinensis HOM05D005529 ORTHO05D006800 2.9e-121 438.7 256 85.2
CiPaw.16G006900 Carya illinoinensis HOM05D005529 ORTHO05D006800 1.5e-120 436.4 254 85.0
Phvul.007G085400 Phaseolus vulgaris HOM05D005529 ORTHO05D006800 6.1e-119 431.0 257 84.0
Atru.chr13.1964 Acer truncatum HOM05D005529 ORTHO05D006800 1.0e-118 430.3 256 83.2
PGR042G1245 Punica granatum HOM05D005529 ORTHO05D006800 1.8e-118 429.5 257 84.0
Glyma.20G171800 Glycine max HOM05D005529 ORTHO05D006800 6.8e-118 427.6 256 83.2
Eucgr.F02670 Eucalyptus grandis HOM05D005529 ORTHO05D006800 8.9e-118 427.2 257 83.7
FvH4_2g12750 Fragaria vesca HOM05D005529 ORTHO05D006800 8.9e-118 427.2 256 83.2
FAN15G0152 Fragaria x ananassa HOM05D005529 ORTHO05D006800 8.9e-118 427.2 256 83.2
FAN27G2439 Fragaria x ananassa HOM05D005529 ORTHO05D006800 8.9e-118 427.2 256 83.2
Glyma.10G219900 Glycine max HOM05D005529 ORTHO05D006800 8.9e-118 427.2 256 83.2
Lj5g0011658 Lotus japonicus HOM05D005529 ORTHO05D006800 1.2e-117 426.8 257 82.5
Medtr1g097380 Medicago truncatula HOM05D005529 ORTHO05D006800 5.7e-117 424.5 257 82.5
FAN24G1078 Fragaria x ananassa HOM05D005529 ORTHO05D006800 9.8e-117 423.7 256 82.8
Psat6g189800 Pisum sativum HOM05D005529 ORTHO05D006800 9.8e-117 423.7 257 82.1
Ciclev10002214m.g Citrus clementina HOM05D005529 ORTHO05D006800 2.2e-116 422.5 255 82.4
Cpa.g.sc26.128 Carica papaya HOM05D005529 ORTHO05D006800 3.7e-116 421.8 257 82.9
Thecc.08G196300 Theobroma cacao HOM05D005529 ORTHO05D006800 3.7e-116 421.8 257 82.1
Lalb_Chr21g0305631 Lupinus albus HOM05D005529 ORTHO05D006800 3.2e-115 418.7 257 81.3
Lalb_Chr06g0161811 Lupinus albus HOM05D005529 ORTHO05D006800 4.1e-115 418.3 257 81.7
CSS0023417 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 7.0e-115 417.5 257 80.2
arahy.Tifrunner.gnm1.ann1.MD2PB3 Arachis hypogaea HOM05D005529 ORTHO05D006800 1.2e-114 416.8 257 80.9
arahy.Tifrunner.gnm1.ann1.PZ5J07 Arachis hypogaea HOM05D005529 ORTHO05D006800 1.2e-114 416.8 257 80.9
CAN.G26.7 Capsicum annuum HOM05D005529 ORTHO05D006800 1.2e-114 416.8 257 80.5
CsaV3_6G004830 Cucumis sativus L. HOM05D005529 ORTHO05D006800 1.2e-114 416.8 257 80.9
Actinidia15622 Actinidia chinensis HOM05D005529 ORTHO05D006800 1.6e-114 416.4 257 80.5
GSVIVG01013675001 Vitis vinifera HOM05D005529 ORTHO05D006800 2.0e-114 416.0 257 80.2
Cc10_g06360 Coffea canephora HOM05D005529 ORTHO05D006800 2.7e-114 415.6 257 80.5
VMungo0720G3143 Vigna mungo HOM05D005529 ORTHO05D006800 3.5e-114 415.2 257 82.1
Aqoxy6G00458 Aquilegia oxysepala HOM05D005529 ORTHO05D006800 4.6e-114 414.8 257 80.9
COL.COLO4_05242 Corchorus olitorius HOM05D005529 ORTHO05D006800 5.9e-114 414.5 257 80.5
Potri.005G199600 Populus trichocarpa HOM05D005529 ORTHO05D006800 5.9e-114 414.5 253 81.8
Peaxi162Scf00160g01637 Petunia axillaris HOM05D005529 ORTHO05D006800 2.3e-113 412.5 257 80.9
Solyc12g056770.3 Solanum lycopersicum HOM05D005529 ORTHO05D006800 2.3e-113 412.5 257 80.5
Sopen12g029450 Solanum pennellii HOM05D005529 ORTHO05D006800 2.3e-113 412.5 257 80.5
Manes.02G186100 Manihot esculenta HOM05D005529 ORTHO05D006800 6.6e-113 411.0 257 78.6
Sed0025527 Sechium edule HOM05D005529 ORTHO05D006800 8.6e-113 410.6 257 80.2
TPR.G23153 Trifolium pratense HOM05D005529 ORTHO05D006800 8.6e-113 410.6 257 79.4
Sabra05G0151800 Salix brachista HOM05D005529 ORTHO05D006800 1.1e-112 410.2 253 81.0
Lj4A706T78 Lonicera japonica HOM05D005529 ORTHO05D006800 5.6e-112 407.9 256 78.5
Sc26g0003120 Simmondsia chinensis HOM05D005529 ORTHO05D006800 5.6e-112 407.9 257 78.6
Migut.C00162 Erythranthe guttata HOM05D005529 ORTHO05D006800 9.5e-112 407.1 256 78.5
Migut.O00737 Erythranthe guttata HOM05D005529 ORTHO05D006800 9.5e-112 407.1 256 78.5
Nitab4.5_0004541g0010 Nicotiana tabacum HOM05D005529 ORTHO05D006800 6.2e-111 404.4 264 78.4
THA.LOC104800098 Tarenaya hassleriana HOM05D005529 ORTHO05D006800 6.2e-111 404.4 257 79.4
Gohir.A05G247200 Gossypium hirsutum HOM05D005529 ORTHO05D006800 1.0e-110 403.7 257 79.4
Gohir.D05G248700 Gossypium hirsutum HOM05D005529 ORTHO05D006800 1.0e-110 403.7 257 79.4
Gorai.009G259800 Gossypium raimondii HOM05D005529 ORTHO05D006800 1.0e-110 403.7 257 79.4
BcaC08g46609 Brassica carinata HOM05D005529 ORTHO05D006800 1.4e-110 403.3 257 79.8
A07p37940 Brassica napus HOM05D005529 ORTHO05D006800 1.4e-110 403.3 257 79.8
C06p45850 Brassica napus HOM05D005529 ORTHO05D006800 1.4e-110 403.3 257 79.8
BolC6t39637H Brassica oleracea HOM05D005529 ORTHO05D006800 1.4e-110 403.3 257 79.8
BraA07t31359Z Brassica rapa HOM05D005529 ORTHO05D006800 1.4e-110 403.3 257 79.8
Thhalv10019028m.g Eutrema salsugineum HOM05D005529 ORTHO05D006800 2.3e-110 402.5 257 79.4
MSTRG.965 Avicennia marina HOM05D005529 ORTHO05D006800 5.2e-110 401.4 257 78.6
DCAR_019977 Daucus carota HOM05D005529 ORTHO05D006800 5.2e-110 401.4 254 78.0
AL2G31360 Arabidopsis lyrata HOM05D005529 ORTHO05D006800 6.8e-110 401.0 257 79.0
Carub.0002s1855 Capsella rubella HOM05D005529 ORTHO05D006800 6.8e-110 401.0 257 79.0
AT1G71790 Arabidopsis thaliana HOM05D005529 ORTHO05D006800 1.5e-109 399.8 257 79.0
Sp5g26810 Schrenkiella parvula HOM05D005529 ORTHO05D006800 3.4e-109 398.7 257 78.6
SpUn0095_0040 Schrenkiella parvula HOM05D005529 ORTHO05D006800 3.4e-109 398.7 257 78.6
Oeu027223.1 Olea europaea HOM05D005529 ORTHO05D006800 5.8e-109 397.9 257 79.4
CSS0035962 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 7.5e-109 397.5 257 77.4
Ah.05g168410 Amaranthus hybridus HOM05D005529 ORTHO05D006800 1.7e-108 396.4 257 77.0
TWI34G1474 Tripterygium wilfordii HOM05D005529 ORTHO05D006800 1.7e-108 396.4 257 78.2
CSS0031927 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 8.3e-108 394.0 257 76.7
AUR62032105 Chenopodium quinoa HOM05D005529 ORTHO05D006800 1.4e-107 393.3 271 73.8
PSO675G2610 Papaver somniferum HOM05D005529 ORTHO05D006800 1.4e-107 393.3 249 77.9
Nn1g05167 Nelumbo nucifera HOM05D005529 ORTHO05D006800 5.4e-107 391.3 257 77.4
PSO541G1243 Papaver somniferum HOM05D005529 ORTHO05D006800 5.4e-107 391.3 249 77.5
Aa31LG4G8850 Aethionema arabicum HOM05D005529 ORTHO05D006800 7.0e-107 391.0 257 77.4
AUR62034931 Chenopodium quinoa HOM05D005529 ORTHO05D006800 7.0e-107 391.0 271 73.1
PGSC0003DMG400016963 Solanum tuberosum HOM05D005529 ORTHO05D006800 9.2e-107 390.6 302 68.2
Manes.18G096400 Manihot esculenta HOM05D005529 ORTHO05D006800 1.2e-106 390.2 257 75.5
TAR381G0607 Trochodendron aralioides HOM05D005529 ORTHO05D006800 1.2e-106 390.2 280 72.5
unitig_32.g11170 Utricularia gibba HOM05D005529 ORTHO05D006800 6.0e-106 387.9 257 75.9
HanXRQChr11g0320531 Helianthus annuus HOM05D005529 ORTHO05D006800 2.5e-104 382.5 258 73.3
SGA_v2.0_scaffold161G37858 Striga asiatica HOM05D005529 ORTHO05D006800 3.3e-104 382.1 263 73.8
vmacro21201 Vaccinium macrocarpon HOM05D005529 ORTHO05D006800 3.3e-104 382.1 213 85.4
CDE04G0217 Ceratophyllum demersum HOM05D005529 ORTHO05D006800 1.6e-103 379.8 257 73.9
ClCG08G007150 Citrullus lanatus HOM05D005529 ORTHO05D006800 6.2e-103 377.9 257 74.3
Dinv41017 Davidia involucrata HOM05D005529 ORTHO05D006800 4.0e-102 375.2 230 80.9
ECA247G3042 Erigeron canadensis HOM05D005529 ORTHO05D006800 3.4e-101 372.1 255 72.5
ECA232G2783 Erigeron canadensis HOM05D005529 ORTHO05D006800 9.8e-101 370.5 257 71.6
Lsat_1_v5_gn_9_42620 Lactuca sativa HOM05D005529 ORTHO05D006800 1.3e-100 370.2 253 73.1
Nn5g28882 Nelumbo nucifera HOM05D005529 ORTHO05D006800 3.7e-100 368.6 250 73.6
Hma1.2p1_0358F.1_g134920 Hydrangea macrophylla HOM05D005529 ORTHO05D006800 8.3e-100 367.5 212 83.5
Nitab4.5_0004295g0010 Nicotiana tabacum HOM05D005529 ORTHO05D006800 1.9e-99 366.3 220 82.3
Os03g0381200 Oryza sativa ssp. japonica HOM05D005529 ORTHO05D006800 1.6e-98 363.2 257 71.2
Lsat_1_v5_gn_1_5401 Lactuca sativa HOM05D005529 ORTHO05D006800 5.1e-97 358.2 249 71.9
ATR0564G028 Amborella trichopoda HOM05D005529 ORTHO05D006800 2.2e-92 342.8 231 73.2
MELO3C019956.2 Cucumis melo HOM05D005529 ORTHO05D006800 2.7e-90 335.9 257 70.0
Duzib093G1833 Durio zibethinus HOM05D005529 ORTHO05D006800 3.5e-90 335.5 257 69.6
Lj7C387G8 Lonicera japonica HOM05D005529 ORTHO05D006800 2.7e-82 309.3 249 63.1
Mapoly0006s0028 Marchantia polymorpha HOM05D005529 ORTHO05D006800 3.5e-82 308.9 247 63.6
Pp3c1_32040 Physcomitrium patens HOM05D005529 ORTHO05D006800 4.6e-82 308.5 251 62.5
SMO141G0273 Selaginella moellendorffii HOM05D005529 ORTHO05D006800 5.6e-80 301.6 250 62.0
TAR625G0192 Trochodendron aralioides HOM05D005529 ORTHO05D006800 3.1e-78 295.8 198 76.3
AagrBONN_evm.TU.Sc2ySwM_228.4378 Anthoceros agrestis HOM05D005529 ORTHO05D006800 1.4e-75 287.0 251 60.2
CDE07G0226 Ceratophyllum demersum HOM05D005529 ORTHO05D006800 9.3e-75 284.3 203 70.4
Zm00001eb018520 Zea mays HOM05D005529 ORTHO05D006800 8.1e-71 271.2 170 76.5
CARHR290990 Cardamine hirsuta HOM05D005529 ORTHO05D006800 1.3e-68 263.8 153 84.3
MD10G1039400 Malus domestica HOM05D005529 ORTHO05D006800 2.7e-66 256.1 159 81.1
Ca_10643_v3 Cicer arietinum L. HOM05D005529 ORTHO05D006800 6.0e-66 255.0 142 88.0
MD10G1040900 Malus domestica HOM05D005529 ORTHO05D006800 3.4e-61 239.2 192 67.7
Glyma.06G212500 Glycine max HOM05D005529 ORTHO05D006800 4.6e-58 228.8 130 85.4
PRCOL_00004850 Prasinoderma coloniale HOM05D005529 ORTHO05D006800 1.1e-54 217.6 254 48.4
Haze_27340 Corylus avellana HOM05D005529 ORTHO05D006800 2.0e-53 213.4 248 45.6
Glyma.09G074800 Glycine max HOM05D005529 ORTHO05D006800 3.2e-51 206.1 114 87.7
Dinv13098 Davidia involucrata HOM05D005529 ORTHO05D006800 2.7e-50 203.0 132 75.0
CSS0032133 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 3.0e-49 199.5 113 78.8
Lsat_1_v5_gn_8_71180 Lactuca sativa HOM05D005529 ORTHO05D006800 4.8e-47 192.2 192 54.7
Cfa022509 Carpinus fangiana HOM05D005529 ORTHO05D006800 1.0e-44 184.5 272 39.0
Glyma.04G140500 Glycine max HOM05D005529 ORTHO05D006800 6.1e-42 175.3 104 83.7
Actinidia02780 Actinidia chinensis HOM05D005529 ORTHO05D006800 2.4e-38 163.3 112 72.3
AUR62022308 Chenopodium quinoa HOM05D005529 ORTHO05D006800 5.3e-38 162.2 102 78.4
Glyma.20G171766 Glycine max HOM05D005529 ORTHO05D006800 1.4e-35 154.1 105 74.3
Actinidia17753 Actinidia chinensis HOM05D005529 ORTHO05D006800 2.5e-35 153.3 117 67.5
Rhsim06G0089200 Rhododendron simsii HOM05D005529 ORTHO05D006800 1.8e-33 147.1 105 69.5
BcaC08g46606 Brassica carinata HOM05D005529 ORTHO05D006800 3.9e-33 146.0 105 73.3
Lsat_1_v5_gn_3_73520 Lactuca sativa HOM05D005529 ORTHO05D006800 4.8e-31 139.0 89 68.5
HPP92_020840 Vanilla planifolia HOM05D005529 ORTHO05D006800 2.4e-30 136.7 105 64.8
HPP92_020744 Vanilla planifolia HOM05D005529 ORTHO05D006800 4.2e-27 125.9 102 61.8
MD10G1041000 Malus domestica HOM05D005529 ORTHO05D006800 1.3e-23 114.4 59 91.5
HPP92_020745 Vanilla planifolia HOM05D005529 ORTHO05D006800 2.2e-23 113.6 89 64.0
HPP92_020839 Vanilla planifolia HOM05D005529 ORTHO05D006800 1.1e-14 84.7 55 72.7
SalBow7G1408 Salvia bowleyana HOM05D005529 ORTHO05D006800 2.7e-13 80.1 67 64.2
Glyma.16G101900 Glycine max HOM05D005529 ORTHO05D006800 8.8e-09 65.1 54 59.3


User provided reference genes

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