Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018205 Carpinus fangiana HOM05D005137 ORTHO05D006478 1.3e-85 319.7 164 100.0
Haze_17904 Corylus avellana HOM05D005137 ORTHO05D006478 1.5e-78 296.2 188 84.0
CiPaw.15G082700 Carya illinoinensis HOM05D005137 ORTHO05D006478 3.1e-71 271.9 164 82.3
Gohir.D05G253100 Gossypium hirsutum HOM05D005137 ORTHO05D006478 3.2e-68 261.9 164 78.7
Gohir.A05G250700 Gossypium hirsutum HOM05D005137 ORTHO05D006478 4.2e-68 261.5 164 78.0
Eucgr.F04136 Eucalyptus grandis HOM05D005137 ORTHO05D006478 7.2e-68 260.8 164 76.2
Gorai.009G263900 Gossypium raimondii HOM05D005137 ORTHO05D006478 9.4e-68 260.4 164 78.0
CSS0031544 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 2.1e-67 259.2 164 79.3
CSS0044586 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 2.1e-67 259.2 164 79.3
Glyma.09G166500 Glycine max HOM05D005137 ORTHO05D006478 2.1e-67 259.2 164 77.4
CANSAT25G3131 Cannabis sativa HOM05D005137 ORTHO05D006478 2.7e-67 258.8 164 77.4
Duzib116G0364 Durio zibethinus HOM05D005137 ORTHO05D006478 3.6e-67 258.5 164 76.2
Glyma.16G156600 Glycine max HOM05D005137 ORTHO05D006478 3.6e-67 258.5 164 76.8
Glyma.02G074600 Glycine max HOM05D005137 ORTHO05D006478 4.7e-67 258.1 164 76.2
Manes.02G220500 Manihot esculenta HOM05D005137 ORTHO05D006478 4.7e-67 258.1 164 76.8
Prupe.8G054100 Prunus persica HOM05D005137 ORTHO05D006478 6.1e-67 257.7 164 78.0
Oeu039592.1 Olea europaea HOM05D005137 ORTHO05D006478 3.0e-66 255.4 164 76.2
Ciclev10002730m.g Citrus clementina HOM05D005137 ORTHO05D006478 4.0e-66 255.0 164 77.4
Cpa.g.sc66.58 Carica papaya HOM05D005137 ORTHO05D006478 5.2e-66 254.6 164 74.4
Atru.chr13.1812 Acer truncatum HOM05D005137 ORTHO05D006478 8.8e-66 253.8 164 75.6
CANSAT64G0780 Cannabis sativa HOM05D005137 ORTHO05D006478 8.8e-66 253.8 164 76.2
Thecc.08G201900 Theobroma cacao HOM05D005137 ORTHO05D006478 8.8e-66 253.8 164 75.0
Sed0020054 Sechium edule HOM05D005137 ORTHO05D006478 2.0e-65 252.7 164 75.0
Duzib177G1119 Durio zibethinus HOM05D005137 ORTHO05D006478 3.3e-65 251.9 164 75.6
Peaxi162Scf00020g02234 Petunia axillaris HOM05D005137 ORTHO05D006478 3.3e-65 251.9 164 76.2
TWI34G1514 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 3.3e-65 251.9 164 75.0
Phvul.004G084500 Phaseolus vulgaris HOM05D005137 ORTHO05D006478 4.4e-65 251.5 164 74.4
Dinv41687 Davidia involucrata HOM05D005137 ORTHO05D006478 5.7e-65 251.1 164 75.6
CSS0049152 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 9.7e-65 250.4 164 77.4
RcHm_v2.0_Chr6g0272201 Rosa chinensis HOM05D005137 ORTHO05D006478 9.7e-65 250.4 164 74.4
Ca_16220_v3 Cicer arietinum L. HOM05D005137 ORTHO05D006478 2.8e-64 248.8 164 75.6
Oeu021007.1 Olea europaea HOM05D005137 ORTHO05D006478 2.8e-64 248.8 164 75.0
TAR628G0708 Trochodendron aralioides HOM05D005137 ORTHO05D006478 2.8e-64 248.8 164 71.3
MD05G1040400 Malus domestica HOM05D005137 ORTHO05D006478 3.7e-64 248.4 164 75.0
MD10G1046500 Malus domestica HOM05D005137 ORTHO05D006478 3.7e-64 248.4 164 76.2
Sopen08g021770 Solanum pennellii HOM05D005137 ORTHO05D006478 3.7e-64 248.4 164 74.4
Solyc08g067830.3 Solanum lycopersicum HOM05D005137 ORTHO05D006478 4.8e-64 248.1 164 74.4
MELO3C024753.2 Cucumis melo HOM05D005137 ORTHO05D006478 6.3e-64 247.7 164 71.3
Migut.N03340 Erythranthe guttata HOM05D005137 ORTHO05D006478 6.3e-64 247.7 164 73.2
THA.LOC104813096 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 6.3e-64 247.7 164 74.4
CsaV3_2G035870 Cucumis sativus L. HOM05D005137 ORTHO05D006478 8.2e-64 247.3 164 72.0
VMungo0464G1968 Vigna mungo HOM05D005137 ORTHO05D006478 8.2e-64 247.3 164 73.8
Sabra13G0097100 Salix brachista HOM05D005137 ORTHO05D006478 1.1e-63 246.9 166 73.5
PGSC0003DMG400033629 Solanum tuberosum HOM05D005137 ORTHO05D006478 1.1e-63 246.9 164 73.8
Carub.0001s3248 Capsella rubella HOM05D005137 ORTHO05D006478 2.4e-63 245.7 164 73.8
Hund27077 Selenicereus undatus HOM05D005137 ORTHO05D006478 2.4e-63 245.7 162 73.5
TWI32G0414 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 2.4e-63 245.7 164 74.4
THA.LOC104806781 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 3.1e-63 245.4 164 72.6
Nn5g27795 Nelumbo nucifera HOM05D005137 ORTHO05D006478 4.1e-63 245.0 164 70.1
Potri.013G114800 Populus trichocarpa HOM05D005137 ORTHO05D006478 5.3e-63 244.6 166 72.9
PGR004G0411 Punica granatum HOM05D005137 ORTHO05D006478 5.3e-63 244.6 164 73.8
CAN.G623.4 Capsicum annuum HOM05D005137 ORTHO05D006478 7.0e-63 244.2 164 73.2
GSVIVG01023270001 Vitis vinifera HOM05D005137 ORTHO05D006478 7.0e-63 244.2 164 72.6
Lalb_Chr01g0009971 Lupinus albus HOM05D005137 ORTHO05D006478 9.1e-63 243.8 164 73.2
SalBow6G2431 Salvia bowleyana HOM05D005137 ORTHO05D006478 9.1e-63 243.8 164 72.0
SalBow6G5561 Salvia bowleyana HOM05D005137 ORTHO05D006478 9.1e-63 243.8 164 72.0
SGA_v2.0_scaffold149G36609 Striga asiatica HOM05D005137 ORTHO05D006478 1.2e-62 243.4 164 72.6
Potri.019G085500 Populus trichocarpa HOM05D005137 ORTHO05D006478 1.6e-62 243.0 166 72.9
Lalb_Chr03g0035851 Lupinus albus HOM05D005137 ORTHO05D006478 2.0e-62 242.7 164 74.4
AL1G48900 Arabidopsis lyrata HOM05D005137 ORTHO05D006478 4.5e-62 241.5 164 72.0
MSTRG.22441 Avicennia marina HOM05D005137 ORTHO05D006478 5.9e-62 241.1 164 70.1
PSO210G7193 Papaver somniferum HOM05D005137 ORTHO05D006478 5.9e-62 241.1 164 72.0
Lj1g0006567 Lotus japonicus HOM05D005137 ORTHO05D006478 7.7e-62 240.7 164 73.2
AT1G34350 Arabidopsis thaliana HOM05D005137 ORTHO05D006478 1.0e-61 240.4 164 71.3
Thhalv10008956m.g Eutrema salsugineum HOM05D005137 ORTHO05D006478 1.0e-61 240.4 164 71.3
Sp1g29570 Schrenkiella parvula HOM05D005137 ORTHO05D006478 1.0e-61 240.4 164 71.3
arahy.Tifrunner.gnm1.ann1.UQ6TGS Arachis hypogaea HOM05D005137 ORTHO05D006478 1.7e-61 239.6 164 71.3
arahy.Tifrunner.gnm1.ann1.RF3N8D Arachis hypogaea HOM05D005137 ORTHO05D006478 2.9e-61 238.8 164 70.1
PSO238G0018 Papaver somniferum HOM05D005137 ORTHO05D006478 6.5e-61 237.7 164 71.3
Psat5g109360 Pisum sativum HOM05D005137 ORTHO05D006478 6.5e-61 237.7 159 74.2
BcaB03g13677 Brassica carinata HOM05D005137 ORTHO05D006478 8.5e-61 237.3 164 70.1
C06p11610 Brassica napus HOM05D005137 ORTHO05D006478 8.5e-61 237.3 164 70.1
Medtr3g078663 Medicago truncatula HOM05D005137 ORTHO05D006478 1.1e-60 236.9 164 72.0
A08p08280 Brassica napus HOM05D005137 ORTHO05D006478 1.5e-60 236.5 164 70.1
Nitab4.5_0000125g0160 Nicotiana tabacum HOM05D005137 ORTHO05D006478 1.5e-60 236.5 164 70.7
Aa31LG6G8420 Aethionema arabicum HOM05D005137 ORTHO05D006478 2.5e-60 235.7 173 67.6
ClCG02G007860 Citrullus lanatus HOM05D005137 ORTHO05D006478 5.5e-60 234.6 159 71.1
Hund16805 Selenicereus undatus HOM05D005137 ORTHO05D006478 5.5e-60 234.6 164 68.3
HanXRQChr01g0027021 Helianthus annuus HOM05D005137 ORTHO05D006478 7.2e-60 234.2 164 67.7
AUR62023580 Chenopodium quinoa HOM05D005137 ORTHO05D006478 1.2e-59 233.4 159 72.3
ECA248G1561 Erigeron canadensis HOM05D005137 ORTHO05D006478 1.2e-59 233.4 164 68.9
BcaC05g27759 Brassica carinata HOM05D005137 ORTHO05D006478 1.6e-59 233.0 164 67.1
BcaC08g43783 Brassica carinata HOM05D005137 ORTHO05D006478 1.6e-59 233.0 164 68.3
C05p37550 Brassica napus HOM05D005137 ORTHO05D006478 1.6e-59 233.0 164 67.1
BolC6t36295H Brassica oleracea HOM05D005137 ORTHO05D006478 1.6e-59 233.0 164 68.3
BcaB07g33131 Brassica carinata HOM05D005137 ORTHO05D006478 2.1e-59 232.6 164 67.7
Sc01g0001710 Simmondsia chinensis HOM05D005137 ORTHO05D006478 2.1e-59 232.6 164 69.5
FAN20G1842 Fragaria x ananassa HOM05D005137 ORTHO05D006478 3.6e-59 231.9 164 68.9
DCAR_006419 Daucus carota HOM05D005137 ORTHO05D006478 4.7e-59 231.5 164 67.7
EL10Ac1g00786 Beta vulgaris HOM05D005137 ORTHO05D006478 6.1e-59 231.1 164 65.9
Cc10_g11140 Coffea canephora HOM05D005137 ORTHO05D006478 6.1e-59 231.1 164 68.9
FvH4_2g12231 Fragaria vesca HOM05D005137 ORTHO05D006478 1.4e-58 229.9 164 67.7
Aqoxy5G03157 Aquilegia oxysepala HOM05D005137 ORTHO05D006478 1.8e-58 229.6 164 68.9
FAN27G0578 Fragaria x ananassa HOM05D005137 ORTHO05D006478 5.2e-58 228.0 164 68.3
Lsat_1_v5_gn_1_53501 Lactuca sativa HOM05D005137 ORTHO05D006478 8.8e-58 227.3 164 67.7
PSO063G4111 Papaver somniferum HOM05D005137 ORTHO05D006478 4.4e-57 224.9 171 67.8
HPP92_025038 Vanilla planifolia HOM05D005137 ORTHO05D006478 6.3e-56 221.1 164 64.6
CDE05G2425 Ceratophyllum demersum HOM05D005137 ORTHO05D006478 1.1e-55 220.3 164 64.0
Medtr1g083990 Medicago truncatula HOM05D001444 ORTHO05D006478 1.1e-55 220.3 174 66.1
BraA08t32846Z Brassica rapa HOM05D005137 ORTHO05D006478 1.4e-55 219.9 193 59.1
unitig_52.g17664 Utricularia gibba HOM05D005137 ORTHO05D006478 1.4e-55 219.9 164 65.2
BolC8t47866H Brassica oleracea HOM05D005137 ORTHO05D006478 2.4e-55 219.2 185 60.5
BolC5t32496H Brassica oleracea HOM05D005137 ORTHO05D006478 7.0e-55 217.6 191 57.1
Zm00001eb174480 Zea mays HOM05D005137 ORTHO05D006478 2.9e-53 212.2 164 59.1
Os08g0104100 Oryza sativa ssp. japonica HOM05D005137 ORTHO05D006478 8.6e-53 210.7 162 60.5
ATR0584G018 Amborella trichopoda HOM05D005137 ORTHO05D006478 5.5e-52 208.0 164 62.8
CARHR033800 Cardamine hirsuta HOM05D005137 ORTHO05D006478 1.5e-49 199.9 133 75.2
SEGI_32859 Sequoiadendron giganteum HOM05D005137 ORTHO05D006478 2.7e-46 189.1 170 56.5
SEGI_32911 Sequoiadendron giganteum HOM05D005137 ORTHO05D006478 2.7e-46 189.1 170 56.5
Os05g0432500 Oryza sativa ssp. japonica HOM05D005137 ORTHO05D006478 3.5e-46 188.7 164 53.0
AUR62004663 Chenopodium quinoa HOM05D005137 ORTHO05D006478 7.3e-44 181.0 169 58.6
Nitab4.5_0006579g0080 Nicotiana tabacum HOM05D005137 ORTHO05D006478 7.3e-44 181.0 164 58.5
COL.COLO4_35446 Corchorus olitorius HOM05D005137 ORTHO05D006478 2.1e-43 179.5 221 50.2
FAN24G3447 Fragaria x ananassa HOM05D004393 ORTHO05D004897 2.8e-43 179.1 132 65.9
Glyma.16G216600 Glycine max HOM05D005137 ORTHO05D006478 6.4e-40 167.9 117 72.6
unitig_62.g23355 Utricularia gibba HOM05D005137 ORTHO05D006478 8.6e-37 157.5 167 50.9
Pp3c12_6500 Physcomitrium patens HOM05D005137 ORTHO05D006478 5.6e-36 154.8 168 47.6
Mapoly0118s0004 Marchantia polymorpha HOM05D005137 ORTHO05D006478 6.2e-35 151.4 165 50.3
AagrBONN_evm.TU.Sc2ySwM_117.1441 Anthoceros agrestis HOM05D005137 ORTHO05D006478 1.1e-34 150.6 169 45.0
CAN.G21.12 Capsicum annuum HOM05D005137 ORTHO05D006478 5.2e-34 148.3 98 75.5
QL02p034107 Quercus lobata HOM05D005137 ORTHO05D006478 1.5e-33 146.7 82 90.2
SMO115G0137 Selaginella moellendorffii HOM05D005137 ORTHO05D006478 9.8e-33 144.1 122 52.5
SMO304G0014 Selaginella moellendorffii HOM05D005137 ORTHO05D006478 5.4e-31 138.3 161 48.4
BraA09t38756Z Brassica rapa HOM05D005137 ORTHO05D006478 1.6e-30 136.7 96 66.7
Actinidia32879 Actinidia chinensis HOM05D005137 ORTHO05D006478 2.7e-30 136.0 94 75.5
Lj7P297T42 Lonicera japonica HOM05D005137 ORTHO05D006478 5.6e-28 128.3 83 75.9
Peaxi162Scf00105g01425 Petunia axillaris HOM05D005137 ORTHO05D006478 7.3e-28 127.9 91 73.6
QL02p034100 Quercus lobata HOM05D005137 ORTHO05D006478 7.3e-28 127.9 84 76.2
Rhsim06G0097400 Rhododendron simsii HOM05D005137 ORTHO05D006478 2.8e-27 125.9 82 75.6
Cre02.g142150 Chlamydomonas reinhardtii HOM05D005137 ORTHO05D006478 4.1e-23 112.1 156 41.7
Dinv30978 Davidia involucrata HOM05D005137 ORTHO05D006478 3.5e-22 109.0 69 73.9
SGA_v2.0_scaffold386G50489 Striga asiatica HOM05D005137 ORTHO05D006478 1.1e-20 104.0 98 57.1
arahy.Tifrunner.gnm1.ann1.T3MISZ Arachis hypogaea HOM05D005137 ORTHO05D006478 2.8e-19 99.4 66 71.2
MCO05G717 Micromonas commoda HOM05D005137 ORTHO05D006478 1.4e-18 97.1 119 36.1
Zm00001eb289230 Zea mays HOM05D005137 ORTHO05D006478 1.8e-18 96.7 82 56.1
BcaB04g17880 Brassica carinata HOM05D005137 ORTHO05D006478 1.9e-15 86.7 57 63.2
Lj7C297T10 Lonicera japonica HOM05D005137 ORTHO05D006478 1.6e-14 83.6 47 80.9
vmacro12499 Vaccinium macrocarpon HOM05D005137 ORTHO05D006478 3.9e-13 79.0 46 76.1
TPR.G27590 Trifolium pratense HOM05D005137 ORTHO05D006478 2.5e-12 76.3 47 74.5
arahy.Tifrunner.gnm1.ann1.T6GVNL Arachis hypogaea HOM05D005137 ORTHO05D006478 4.7e-11 72.0 53 66.0
arahy.Tifrunner.gnm1.ann1.84LCSI Arachis hypogaea HOM05D005137 ORTHO05D013367 1.1e-10 70.9 46 71.7
arahy.Tifrunner.gnm1.ann1.A3G9LL Arachis hypogaea HOM05D005137 ORTHO05D006478 2.6e-09 66.2 48 66.7
SGA_v2.0_scaffold1053G53813 Striga asiatica HOM05D005137 ORTHO05D006478 9.9e-09 64.3 81 46.9
Medtr2g069440 Medicago truncatula HOM05D003000 ORTHO05D003699 3.5e-06 55.8 44 59.1


User provided reference genes

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