Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018204 Carpinus fangiana HOM05D004393 ORTHO05D004897 0.0e+00 1712.6 917 100.0
Haze_17905 Corylus avellana HOM05D004393 ORTHO05D004897 0.0e+00 1464.1 1039 80.2
QL02p034089 Quercus lobata HOM05D004393 ORTHO05D004897 6.6e-227 791.6 1032 51.2
CiPaw.16G062700 Carya illinoinensis HOM05D004393 ORTHO05D004897 1.3e-190 671.0 1135 44.8
Thecc.08G202200 Theobroma cacao HOM05D004393 ORTHO05D004897 4.3e-178 629.4 946 45.9
Duzib116G0396 Durio zibethinus HOM05D004393 ORTHO05D004897 3.0e-163 580.1 944 44.6
Manes.18G099700 Manihot esculenta HOM05D004393 ORTHO05D004897 4.3e-162 576.2 923 46.9
Potri.013G114700 Populus trichocarpa HOM05D004393 ORTHO05D004897 5.5e-149 532.7 938 41.8
Ciclev10000264m.g Citrus clementina HOM05D004393 ORTHO05D004897 1.8e-147 527.7 629 52.8
Atru.chr13.1813 Acer truncatum HOM05D004393 ORTHO05D004897 1.8e-144 517.7 960 42.8
GSVIVG01034506001 Vitis vinifera HOM05D004393 ORTHO05D004897 2.9e-142 510.4 625 53.0
Prupe.8G054200 Prunus persica HOM05D004393 ORTHO05D004897 1.1e-138 498.4 1061 38.1
TAR381G1591 Trochodendron aralioides HOM05D004393 ORTHO05D004897 3.7e-137 493.4 598 52.2
COL.COLO4_29964 Corchorus olitorius HOM05D004393 ORTHO05D004897 2.2e-134 484.2 970 40.5
MD05G1040500 Malus domestica HOM05D004393 ORTHO05D004897 2.7e-132 477.2 955 40.2
MD10G1046600 Malus domestica HOM05D004393 ORTHO05D004897 2.7e-132 477.2 952 40.2
Cpa.g.sc66.57 Carica papaya HOM05D004393 ORTHO05D004897 6.1e-132 476.1 964 41.3
Sabra13G0097000 Salix brachista HOM05D004393 ORTHO05D004897 1.4e-131 474.9 538 54.1
Nn5g27793 Nelumbo nucifera HOM05D004393 ORTHO05D004897 1.8e-131 474.6 664 49.5
TWI60G1027 Tripterygium wilfordii HOM05D004393 ORTHO05D004897 6.3e-129 466.1 941 40.5
RcHm_v2.0_Chr6g0272171 Rosa chinensis HOM05D004393 ORTHO05D004897 3.5e-127 460.3 972 39.0
Actinidia23321 Actinidia chinensis HOM05D004393 ORTHO05D004897 2.7e-124 450.7 972 38.4
CANSAT25G3510 Cannabis sativa HOM05D004393 ORTHO05D004897 8.8e-123 445.7 960 38.4
Gohir.A09G117000 Gossypium hirsutum HOM05D004393 ORTHO05D004897 4.8e-121 439.9 926 38.2
Gorai.006G131600 Gossypium raimondii HOM05D004393 ORTHO05D004897 2.0e-119 434.5 931 38.8
Gohir.D09G113900 Gossypium hirsutum HOM05D004393 ORTHO05D004897 4.7e-116 423.3 930 38.4
Rhsim06G0097300 Rhododendron simsii HOM05D004393 ORTHO05D004897 8.6e-110 402.5 665 43.0
Aqoxy6G00122 Aquilegia oxysepala HOM05D004393 ORTHO05D004897 1.4e-107 395.2 548 46.9
ClCG09G010400 Citrullus lanatus HOM05D004393 ORTHO05D004897 1.8e-107 394.8 554 46.6
FAN24G3447 Fragaria x ananassa HOM05D004393 ORTHO05D004897 3.1e-107 394.0 942 36.3
FvH4_2g12232 Fragaria vesca HOM05D004393 ORTHO05D004897 5.2e-107 393.3 942 36.2
CSS0013393 Camellia sinensis var. sinensis HOM05D004393 ORTHO05D004897 5.8e-106 389.8 498 51.2
FAN27G3511 Fragaria x ananassa HOM05D004393 ORTHO05D004897 7.5e-106 389.4 961 36.0
FAN20G0457 Fragaria x ananassa HOM05D004393 ORTHO05D004897 4.9e-105 386.7 989 35.3
Hund27078 Selenicereus undatus HOM05D004393 ORTHO05D004897 1.1e-104 385.6 433 52.4
Lj2g0019211 Lotus japonicus HOM05D004393 ORTHO05D004897 1.2e-103 382.1 401 52.4
vmacro12498 Vaccinium macrocarpon HOM05D004393 ORTHO05D004897 6.6e-102 376.3 695 41.7
Lalb_Chr03g0035861 Lupinus albus HOM05D004393 ORTHO05D004897 4.3e-101 373.6 399 53.4
Sc01g0001720 Simmondsia chinensis HOM05D004393 ORTHO05D004897 5.6e-101 373.2 550 44.7
CsaV3_7G024210 Cucumis sativus L. HOM05D004393 ORTHO05D004897 9.5e-101 372.5 947 35.3
Sed0026578 Sechium edule HOM05D004393 ORTHO05D004897 1.2e-100 372.1 556 46.4
Phvul.004G084400 Phaseolus vulgaris HOM05D004393 ORTHO05D004897 3.1e-99 367.5 417 51.6
AUR62023578 Chenopodium quinoa HOM05D004393 ORTHO05D004897 5.2e-99 366.7 594 41.9
AUR62004661 Chenopodium quinoa HOM05D004393 ORTHO05D004897 6.8e-99 366.3 592 41.6
PGR042G3903 Punica granatum HOM05D004393 ORTHO05D004897 2.0e-98 364.8 582 42.6
MELO3C023669.2 Cucumis melo HOM05D004393 ORTHO05D004897 3.2e-96 357.5 546 44.7
Glyma.16G156500 Glycine max HOM05D004393 ORTHO05D004897 5.4e-96 356.7 473 46.9
Oeu021008.1 Olea europaea HOM05D004393 ORTHO05D004897 3.5e-95 354.0 400 50.2
Cc00_g08770 Coffea canephora HOM05D004393 ORTHO05D004897 1.3e-94 352.1 588 42.5
Glyma.02G074500 Glycine max HOM05D004393 ORTHO05D004897 1.5e-93 348.6 596 41.4
Nitab4.5_0004461g0010 Nicotiana tabacum HOM05D004393 ORTHO05D004897 1.9e-93 348.2 613 41.3
Nitab4.5_0000303g0030 Nicotiana tabacum HOM05D004393 ORTHO05D004897 5.6e-93 346.7 605 40.0
PSO782G0828 Papaver somniferum HOM05D004393 ORTHO05D004897 5.6e-93 346.7 404 53.2
Nitab4.5_0000159g0160 Nicotiana tabacum HOM05D004393 ORTHO05D004897 2.8e-92 344.4 422 49.8
Lalb_Chr01g0009981 Lupinus albus HOM05D004393 ORTHO05D004897 1.1e-91 342.4 428 47.7
VMungo0464G1718 Vigna mungo HOM05D004393 ORTHO05D004897 1.1e-91 342.4 494 44.1
Nitab4.5_0009001g0010 Nicotiana tabacum HOM05D004393 ORTHO05D004897 2.3e-91 341.3 419 49.2
Peaxi162Scf00268g01216 Petunia axillaris HOM05D004393 ORTHO05D004897 1.2e-90 339.0 750 36.8
Solyc06g065450.3 Solanum lycopersicum HOM05D004393 ORTHO05D004897 2.2e-89 334.7 400 50.5
Solyc11g017130.2 Solanum lycopersicum HOM05D004393 ORTHO05D004897 2.9e-89 334.3 400 51.2
Sopen06g023940 Solanum pennellii HOM05D004393 ORTHO05D004897 2.9e-89 334.3 400 50.5
Sopen11g009080 Solanum pennellii HOM05D004393 ORTHO05D004897 8.3e-89 332.8 400 51.0
PSO170G6764 Papaver somniferum HOM05D004393 ORTHO05D004897 1.4e-88 332.0 404 51.7
PGSC0003DMG402026117 Solanum tuberosum HOM05D004393 ORTHO05D004897 1.4e-88 332.0 399 49.6
Ah.05g177790 Amaranthus hybridus HOM05D004393 ORTHO05D004897 1.9e-88 331.6 482 44.8
arahy.Tifrunner.gnm1.ann1.MV35XS Arachis hypogaea HOM05D004393 ORTHO05D004897 2.4e-88 331.3 577 39.0
arahy.Tifrunner.gnm1.ann1.Y0NS3Z Arachis hypogaea HOM05D004393 ORTHO05D004897 3.2e-88 330.9 676 35.9
arahy.Tifrunner.gnm1.ann1.6817V4 Arachis hypogaea HOM05D004393 ORTHO05D004897 4.1e-88 330.5 577 39.5
MSTRG.25436 Avicennia marina HOM05D004393 ORTHO05D004897 5.4e-88 330.1 395 48.9
Aa31LG6G8430 Aethionema arabicum HOM05D004393 ORTHO05D004897 4.6e-87 327.0 636 39.6
Peaxi162Scf00495g00119 Petunia axillaris HOM05D004393 ORTHO05D004897 4.6e-87 327.0 391 51.2
Oeu039591.2 Olea europaea HOM05D004393 ORTHO05D004897 6.0e-87 326.6 381 48.3
arahy.Tifrunner.gnm1.ann1.1646XJ Arachis hypogaea HOM05D004393 ORTHO05D004897 1.7e-86 325.1 679 35.9
Thhalv10006568m.g Eutrema salsugineum HOM05D004393 ORTHO05D004897 3.0e-86 324.3 590 41.0
THA.LOC104813097 Tarenaya hassleriana HOM05D004393 ORTHO05D004897 3.0e-86 324.3 386 49.2
CARHR033810 Cardamine hirsuta HOM05D004393 ORTHO05D004897 6.6e-86 323.2 768 35.4
CAN.G199.23 Capsicum annuum HOM05D004393 ORTHO05D004897 1.1e-85 322.4 657 38.4
AL1G48910 Arabidopsis lyrata HOM05D004393 ORTHO05D004897 3.3e-85 320.9 642 40.2
DCAR_014776 Daucus carota HOM05D004393 ORTHO05D004897 5.6e-85 320.1 667 37.6
Glyma.10G215100 Glycine max HOM05D004393 ORTHO05D004897 5.6e-85 320.1 470 46.4
BcaC08g43782 Brassica carinata HOM05D004393 ORTHO05D004897 8.1e-84 316.2 540 41.1
C06p11600 Brassica napus HOM05D004393 ORTHO05D004897 8.1e-84 316.2 540 41.1
BolC6t36294H Brassica oleracea HOM05D004393 ORTHO05D004897 8.1e-84 316.2 540 41.1
CAN.G61.21 Capsicum annuum HOM05D004393 ORTHO05D004897 1.8e-83 315.1 395 49.6
AT1G34355 Arabidopsis thaliana HOM05D004393 ORTHO05D004897 2.4e-83 314.7 616 38.3
BraA09t38751Z Brassica rapa HOM05D004393 ORTHO05D004897 2.0e-82 311.6 462 44.4
MBI16_g07683_MAGBIO Magnolia biondii HOM05D004393 ORTHO05D004897 1.3e-81 308.9 335 54.6
Sp1g29580 Schrenkiella parvula HOM05D004393 ORTHO05D004897 2.9e-81 307.8 690 38.1
A10p12670 Brassica napus HOM05D004393 ORTHO05D004897 5.4e-80 303.5 699 36.6
C09p46070 Brassica napus HOM05D004393 ORTHO05D004897 5.4e-80 303.5 482 43.6
BolC9t57476H Brassica oleracea HOM05D004393 ORTHO05D004897 5.4e-80 303.5 482 43.6
PGSC0003DMG400009216 Solanum tuberosum HOM05D004393 ORTHO05D004897 7.1e-80 303.1 300 58.3
BraA10t43355Z Brassica rapa HOM05D004393 ORTHO05D004897 9.2e-80 302.8 700 36.7
ATR0584G230 Amborella trichopoda HOM05D004393 ORTHO05D004897 4.6e-79 300.4 460 43.7
VMungo0720G0020 Vigna mungo HOM05D004393 ORTHO05D004897 4.6e-79 300.4 673 37.1
Phvul.007G090600 Phaseolus vulgaris HOM05D004393 ORTHO05D004897 7.8e-79 299.7 656 37.3
Carub.0001s3249 Capsella rubella HOM05D004393 ORTHO05D004897 3.9e-78 297.4 572 39.3
BcaC04g20233 Brassica carinata HOM05D004393 ORTHO05D004897 1.5e-77 295.4 696 35.3
Lj5g0027195 Lotus japonicus HOM05D004393 ORTHO05D004897 7.3e-77 293.1 633 38.5
BcaB07g33130 Brassica carinata HOM05D004393 ORTHO05D004897 8.1e-76 289.7 675 36.1
TPR.G1817 Trifolium pratense HOM05D004393 ORTHO05D004897 2.4e-75 288.1 632 38.4
SalBow7G1128 Salvia bowleyana HOM05D004393 ORTHO05D004897 1.5e-74 285.4 487 41.1
Lj7C297T5 Lonicera japonica HOM05D004393 ORTHO05D004897 2.3e-70 271.6 308 52.9
SGA_v2.0_scaffold118G32462 Striga asiatica HOM05D004393 ORTHO05D004897 2.5e-69 268.1 600 36.3
CDE04G2403 Ceratophyllum demersum HOM05D004393 ORTHO05D004897 1.4e-67 262.3 410 43.7
Migut.C01240 Erythranthe guttata HOM05D004393 ORTHO05D004897 2.4e-67 261.5 586 35.7
Ca_10603_v3 Cicer arietinum L. HOM05D004393 ORTHO05D004897 1.3e-65 255.8 668 33.5
A09p32120 Brassica napus HOM05D004393 ORTHO05D004897 2.9e-65 254.6 666 36.2
Medtr1g096000 Medicago truncatula HOM05D004393 ORTHO05D004897 3.8e-65 254.2 701 33.2
SGA_v2.0_scaffold24G10548 Striga asiatica HOM05D004393 ORTHO05D004897 3.8e-65 254.2 502 38.2
Os11g0171700 Oryza sativa ssp. japonica HOM05D004393 ORTHO05D004897 1.8e-62 245.4 324 45.7
HPP92_019371 Vanilla planifolia HOM05D004393 ORTHO05D004897 5.1e-62 243.8 409 42.1
A08p08270 Brassica napus HOM05D004393 ORTHO05D004897 1.3e-57 229.2 267 49.4
Zm00001eb091700 Zea mays HOM05D004393 ORTHO05D004897 3.8e-57 227.6 341 41.6
BraA08t32845Z Brassica rapa HOM05D004393 ORTHO05D004897 2.5e-56 224.9 346 43.6
SEGI_03768 Sequoiadendron giganteum HOM05D004393 ORTHO05D004897 7.1e-56 223.4 434 37.8
BcaB04g17878 Brassica carinata HOM05D004393 ORTHO05D004897 4.3e-53 214.2 257 50.2
BolC8t47860H Brassica oleracea HOM05D004393 ORTHO05D004897 2.1e-52 211.8 271 47.2
BcaC07g37547 Brassica carinata HOM05D004393 ORTHO05D004897 2.8e-52 211.5 271 47.2
Psat6g185840 Pisum sativum HOM05D004393 ORTHO05D004897 1.2e-50 206.1 245 47.8
BcaB06g26599 Brassica carinata HOM05D004393 ORTHO05D004897 2.2e-49 201.8 302 44.4
TAR624G0562 Trochodendron aralioides HOM05D004393 ORTHO05D004897 1.1e-48 199.5 329 44.7
SHI09053 Sapria himalayana HOM05D004393 ORTHO05D004897 9.3e-48 196.4 680 30.3
TAR624G0853 Trochodendron aralioides HOM05D004393 ORTHO05D004897 1.5e-45 189.1 157 61.1
A07p08200 Brassica napus HOM05D004393 ORTHO05D004897 1.9e-45 188.7 225 49.3
BraA07t28604Z Brassica rapa HOM05D004393 ORTHO05D004897 1.9e-45 188.7 225 49.3
C07p12350 Brassica napus HOM05D004393 ORTHO05D004897 3.7e-44 184.5 300 42.0
Dinv01093 Davidia involucrata HOM05D004393 ORTHO05D004897 3.7e-44 184.5 695 31.2
Lalb_Chr24g0401061 Lupinus albus HOM05D004393 ORTHO05D004897 1.1e-43 183.0 211 47.9
Glyma.20G176566 Glycine max HOM05D004393 ORTHO05D004897 9.0e-43 179.9 272 45.2
BcaC06g35663 Brassica carinata HOM05D004393 ORTHO05D004897 5.9e-42 177.2 203 51.2
ECA232G2172 Erigeron canadensis HOM05D004393 ORTHO05D004897 1.6e-39 169.1 368 33.4
Lsat_1_v5_gn_4_119261 Lactuca sativa HOM05D004393 ORTHO05D004897 1.0e-38 166.4 215 45.1
AagrBONN_evm.TU.Sc2ySwM_344.4382 Anthoceros agrestis HOM05D004393 ORTHO05D004897 1.1e-35 156.4 194 47.4
Mapoly0005s0164 Marchantia polymorpha HOM05D004393 ORTHO05D004897 1.0e-33 149.8 195 44.6
SMO351G0170 Selaginella moellendorffii HOM05D004393 ORTHO05D004897 1.1e-32 146.4 456 31.8
Pp3c16_5970 Physcomitrium patens HOM05D043451 ORTHO05D004897 1.4e-32 146.0 190 46.8
Pp3c27_1110 Physcomitrium patens HOM05D004393 ORTHO05D004897 9.4e-32 143.3 375 31.5
Pp3c5_9820 Physcomitrium patens HOM05D004393 ORTHO05D004897 3.9e-30 137.9 194 41.8
AUR62012506 Chenopodium quinoa HOM05D004393 ORTHO05D004897 1.5e-29 136.0 267 37.8
HanXRQChr09g0268931 Helianthus annuus HOM05D004393 ORTHO05D004897 9.1e-27 126.7 955 23.6
BolC7t41736H Brassica oleracea HOM05D004393 ORTHO05D004897 1.7e-25 122.5 211 42.2
CDE12G0855 Ceratophyllum demersum HOM05D004393 ORTHO05D004897 1.2e-23 116.3 116 54.3
EL10Ac1g00069 Beta vulgaris HOM05D004393 ORTHO05D004897 3.6e-23 114.8 151 42.4
Eucgr.F02629 Eucalyptus grandis HOM05D004393 ORTHO05D004897 1.1e-19 103.2 287 36.2
Peaxi162Scf00207g01617 Petunia axillaris HOM05D004393 ORTHO05D004897 4.5e-18 97.8 217 34.6
Actinidia32880 Actinidia chinensis HOM05D004393 ORTHO05D004897 7.7e-18 97.1 146 45.2
Sabra17G0066000 Salix brachista HOM05D004393 ORTHO05D004897 9.4e-16 90.1 214 36.4
SMO231G0043 Selaginella moellendorffii HOM05D055046 ORTHO05D004897 3.2e-08 65.1 90 44.4
Lalb_Chr24g0401071 Lupinus albus HOM05D004393 ORTHO05D004897 1.6e-07 62.8 85 50.6
TAR633G1505 Trochodendron aralioides HOM05D004393 ORTHO05D004897 1.6e-07 62.8 116 44.8
Sabra07G0062800 Salix brachista HOM05D004393 ORTHO05D004897 5.2e-06 57.8 52 55.8
Lj7A297T45 Lonicera japonica HOM05D004393 ORTHO05D004897 6.8e-06 57.4 161 36.6


User provided reference genes

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