Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018200 Carpinus fangiana HOM05D000029 ORTHO05D003879 3.8e-122 443.0 615 100.0
Haze_17910 Corylus avellana HOM05D000029 ORTHO05D003879 5.4e-84 316.2 616 89.9
Cfa018196 Carpinus fangiana HOM05D000029 ORTHO05D003879 7.9e-67 259.2 600 80.8
Haze_17915 Corylus avellana HOM05D000029 ORTHO05D003879 7.1e-60 236.1 577 82.3
Cfa018199 Carpinus fangiana HOM05D000029 ORTHO05D003879 5.7e-49 199.9 151 98.7
CiPaw.15G082500 Carya illinoinensis HOM05D000029 ORTHO05D003879 6.9e-47 193.0 592 73.3
CiPaw.15G082400 Carya illinoinensis HOM05D000029 ORTHO05D003879 2.6e-38 164.5 132 66.7
QL02p034028 Quercus lobata HOM05D000029 ORTHO05D003879 2.6e-38 164.5 606 70.6
Haze_17911 Corylus avellana HOM05D000029 ORTHO05D003879 2.2e-37 161.4 152 86.2
Potri.019G084800 Populus trichocarpa HOM05D000029 ORTHO05D003879 2.1e-35 154.8 132 59.8
Sabra19G0095900 Salix brachista HOM05D000029 ORTHO05D003879 1.8e-34 151.8 132 59.1
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 6.7e-34 149.8 132 57.6
Manes.02G190900 Manihot esculenta HOM05D000029 ORTHO05D003879 3.3e-33 147.5 134 59.0
TWI34G0629 Tripterygium wilfordii HOM05D000029 ORTHO05D003879 2.2e-32 144.8 135 56.3
Atru.chr13.1828 Acer truncatum HOM05D000029 ORTHO05D003879 8.2e-32 142.9 134 58.2
Prupe.8G051700 Prunus persica HOM05D000029 ORTHO05D003879 8.2e-32 142.9 134 56.0
Potri.013G114200 Populus trichocarpa HOM05D000029 ORTHO05D003879 1.1e-31 142.5 132 58.3
Rhsim10G0041300 Rhododendron simsii HOM05D000029 ORTHO05D003879 4.1e-31 140.6 135 55.6
Atru.chr13.1823 Acer truncatum HOM05D000029 ORTHO05D003879 7.0e-31 139.8 134 58.2
Dinv08018 Davidia involucrata HOM05D000029 ORTHO05D003879 7.0e-31 139.8 139 57.6
Atru.chr13.1800 Acer truncatum HOM05D000029 ORTHO05D003879 9.1e-31 139.4 134 57.5
CSS0047735 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D003879 9.1e-31 139.4 139 57.6
CANSAT64G2826 Cannabis sativa HOM05D000029 ORTHO05D003879 9.1e-31 139.4 124 56.5
CSS0001053 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D003879 1.2e-30 139.0 139 56.8
CSS0010817 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D003879 1.2e-30 139.0 139 56.8
CSS0010851 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D003879 1.2e-30 139.0 139 56.8
vmacro12494 Vaccinium macrocarpon HOM05D000029 ORTHO05D003879 1.2e-30 139.0 137 55.5
Eucgr.L01480 Eucalyptus grandis HOM05D000029 ORTHO05D003879 1.5e-30 138.7 116 60.3
CSS0046817 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D003879 2.6e-30 137.9 139 56.8
CSS0006375 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D003879 3.5e-30 137.5 139 56.8
Rhsim10G0034100 Rhododendron simsii HOM05D000029 ORTHO05D003879 3.5e-30 137.5 135 54.8
RhsimUnG0063100 Rhododendron simsii HOM05D000029 ORTHO05D003879 3.5e-30 137.5 135 54.1
Atru.chr13.1801 Acer truncatum HOM05D000029 ORTHO05D003879 4.5e-30 137.1 134 57.5
RhsimUnG0063000 Rhododendron simsii HOM05D000029 ORTHO05D003879 4.5e-30 137.1 135 54.1
RcHm_v2.0_Chr1g0316221 Rosa chinensis HOM05D015504 ORTHO05D003879 5.9e-30 136.7 136 56.6
vmacro05721 Vaccinium macrocarpon HOM05D000029 ORTHO05D003879 5.0e-29 133.7 137 54.0
Atru.chr13.1802 Acer truncatum HOM05D000029 ORTHO05D003879 1.1e-28 132.5 131 55.7
Glyma.16G156100 Glycine max HOM05D000029 ORTHO05D003879 2.5e-28 131.3 132 52.3
Phvul.004G084688 Phaseolus vulgaris HOM05D000029 ORTHO05D003879 2.5e-28 131.3 133 56.4
Eucgr.F04133 Eucalyptus grandis HOM05D000029 ORTHO05D003879 3.2e-28 131.0 121 55.4
Phvul.004G085076 Phaseolus vulgaris HOM05D000029 ORTHO05D003879 3.2e-28 131.0 133 56.4
Sabra19G0096000 Salix brachista HOM05D000029 ORTHO05D003879 3.2e-28 131.0 134 54.5
Glyma.16G156200 Glycine max HOM05D000029 ORTHO05D003879 4.2e-28 130.6 132 51.5
TAR628G0281 Trochodendron aralioides HOM05D000029 ORTHO05D003879 4.2e-28 130.6 130 56.2
Manes.18G100200 Manihot esculenta HOM05D000029 ORTHO05D003879 5.5e-28 130.2 134 56.0
vmacro05722 Vaccinium macrocarpon HOM05D000132 ORTHO05D000058 5.5e-28 130.2 138 53.6
Cc00_g11880 Coffea canephora HOM05D000029 ORTHO05D003879 1.2e-27 129.0 137 51.8
Rhsim10G0034000 Rhododendron simsii HOM05D000029 ORTHO05D003879 1.2e-27 129.0 135 52.6
Cc00_g03680 Coffea canephora HOM05D000029 ORTHO05D003879 1.6e-27 128.6 138 52.9
Rhsim10G0041900 Rhododendron simsii HOM05D000029 ORTHO05D003879 1.6e-27 128.6 133 53.4
Actinidia23329 Actinidia chinensis HOM05D000029 ORTHO05D003879 2.7e-27 127.9 139 51.8
CAN.G342.4 Capsicum annuum HOM05D000029 ORTHO05D003879 3.6e-27 127.5 126 50.8
Prupe.8G056100 Prunus persica HOM05D000029 ORTHO05D003879 3.6e-27 127.5 135 53.3
RcHm_v2.0_Chr6g0272091 Rosa chinensis HOM05D000029 ORTHO05D003879 1.4e-26 125.6 132 52.3
Sed0023164 Sechium edule HOM05D000029 ORTHO05D003879 3.0e-26 124.4 117 54.7
Nitab4.5_0010911g0020 Nicotiana tabacum HOM05D000029 ORTHO05D003879 3.9e-26 124.0 124 50.8
SalBow6G0200 Salvia bowleyana HOM05D000029 ORTHO05D003879 5.2e-26 123.6 137 52.6
SalBow6G0778 Salvia bowleyana HOM05D000029 ORTHO05D003879 5.2e-26 123.6 137 52.6
ClCG09G010450 Citrullus lanatus HOM05D000029 ORTHO05D003879 6.7e-26 123.2 119 57.1
FvH4_2g12120 Fragaria vesca HOM05D000029 ORTHO05D003879 6.7e-26 123.2 133 48.9
FAN24G0359 Fragaria x ananassa HOM05D000029 ORTHO05D003879 6.7e-26 123.2 133 48.9
Ciclev10000182m.g Citrus clementina HOM05D000029 ORTHO05D003879 8.8e-26 122.9 600 75.0
Lj4C507T2 Lonicera japonica HOM05D000029 ORTHO05D003879 8.8e-26 122.9 135 51.1
Sabra19G0096100 Salix brachista HOM05D000029 ORTHO05D003879 8.8e-26 122.9 134 53.0
Lj4A516T35 Lonicera japonica HOM05D000029 ORTHO05D003879 1.1e-25 122.5 135 51.1
PGSC0003DMG400009238 Solanum tuberosum HOM05D000029 ORTHO05D003879 1.1e-25 122.5 123 50.4
FvH4_5g16590 Fragaria vesca HOM05D000029 ORTHO05D003879 1.5e-25 122.1 133 49.6
MELO3C023665.2 Cucumis melo HOM05D000029 ORTHO05D003879 2.0e-25 121.7 119 53.8
vmacro22381 Vaccinium macrocarpon HOM05D000132 ORTHO05D000058 2.0e-25 121.7 134 46.3
SalBow6G0392 Salvia bowleyana HOM05D000029 ORTHO05D003879 2.6e-25 121.3 137 51.1
arahy.Tifrunner.gnm1.ann1.TX2FLU Arachis hypogaea HOM05D000029 ORTHO05D003879 4.4e-25 120.6 134 50.0
SalBow6G7126 Salvia bowleyana HOM05D000029 ORTHO05D003879 4.4e-25 120.6 137 51.1
TAR376G0621 Trochodendron aralioides HOM05D000029 ORTHO05D003879 4.4e-25 120.6 130 51.5
Sc01g0001730 Simmondsia chinensis HOM05D000029 ORTHO05D003879 5.7e-25 120.2 131 51.9
MSTRG.1520 Avicennia marina HOM05D000029 ORTHO05D003879 7.4e-25 119.8 112 56.2
Rhsim06G0097000 Rhododendron simsii HOM05D000029 ORTHO05D003879 7.4e-25 119.8 135 48.1
vmacro08239 Vaccinium macrocarpon HOM05D000132 ORTHO05D000058 9.7e-25 119.4 137 50.4
Gohir.A09G117200 Gossypium hirsutum HOM05D000029 ORTHO05D003879 1.3e-24 119.0 135 52.6
Gohir.A09G117301 Gossypium hirsutum HOM05D000029 ORTHO05D003879 1.3e-24 119.0 135 52.6
Lj5g0012115 Lotus japonicus HOM05D000029 ORTHO05D003879 2.8e-24 117.9 136 48.5
CsaV3_7G024110 Cucumis sativus L. HOM05D000029 ORTHO05D003879 3.7e-24 117.5 119 52.9
Solyc11g017280.2 Solanum lycopersicum HOM05D000029 ORTHO05D003879 3.7e-24 117.5 123 50.4
MD10G1047300 Malus domestica HOM05D000029 ORTHO05D003879 4.8e-24 117.1 134 53.0
Potri.019G084700 Populus trichocarpa HOM05D000029 ORTHO05D003879 4.8e-24 117.1 134 50.7
Sopen11g009160 Solanum pennellii HOM05D000029 ORTHO05D003879 4.8e-24 117.1 123 49.6
FAN27G1538 Fragaria x ananassa HOM05D000029 ORTHO05D003879 6.3e-24 116.7 133 48.1
Lalb_Chr19g0129791 Lupinus albus HOM05D000029 ORTHO05D003879 6.3e-24 116.7 134 48.5
Nitab4.5_0000560g0040 Nicotiana tabacum HOM05D000029 ORTHO05D003879 6.3e-24 116.7 124 49.2
Psat0s2229g0040 Pisum sativum HOM05D000029 ORTHO05D003879 6.3e-24 116.7 119 53.8
arahy.Tifrunner.gnm1.ann1.BISG48 Arachis hypogaea HOM05D000029 ORTHO05D003879 8.2e-24 116.3 134 50.0
FAN08G2074 Fragaria x ananassa HOM05D000029 ORTHO05D003879 1.8e-23 115.2 133 48.1
TPR.G8832 Trifolium pratense HOM05D000029 ORTHO05D003879 4.1e-23 114.0 119 53.8
Gohir.D09G114100 Gossypium hirsutum HOM05D000029 ORTHO05D003879 5.3e-23 113.6 135 50.4
Gorai.006G131800 Gossypium raimondii HOM05D000029 ORTHO05D003879 5.3e-23 113.6 135 50.4
Ca_10609_v3 Cicer arietinum L. HOM05D000029 ORTHO05D003879 7.0e-23 113.2 133 49.6
MD10G1047000 Malus domestica HOM05D000029 ORTHO05D003879 1.2e-22 112.5 607 71.8
RcHm_v2.0_Chr6g0272061 Rosa chinensis HOM05D000029 ORTHO05D003879 1.2e-22 112.5 131 46.6
MD05G1041000 Malus domestica HOM05D000029 ORTHO05D003879 2.0e-22 111.7 116 55.2
BcaB04g17876 Brassica carinata HOM05D000029 ORTHO05D003879 2.6e-22 111.3 111 51.4
Dinv41693 Davidia involucrata HOM05D000029 ORTHO05D003879 2.6e-22 111.3 140 47.9
PGR102G0708 Punica granatum HOM05D000029 ORTHO05D003879 2.6e-22 111.3 124 51.6
SalBow6G2947 Salvia bowleyana HOM05D000029 ORTHO05D003879 2.6e-22 111.3 137 48.2
SalBow6G4183 Salvia bowleyana HOM05D000029 ORTHO05D003879 2.6e-22 111.3 137 48.2
MSTRG.22443 Avicennia marina HOM05D000029 ORTHO05D003879 5.9e-22 110.2 137 46.7
Duzib177G1182 Durio zibethinus HOM05D000029 ORTHO05D003879 7.7e-22 109.8 120 52.5
Nn1g05578 Nelumbo nucifera HOM05D000029 ORTHO05D003879 7.7e-22 109.8 127 49.6
Nitab4.5_0000560g0090 Nicotiana tabacum HOM05D000029 ORTHO05D003879 7.7e-22 109.8 105 54.3
Lalb_Chr03g0035901 Lupinus albus HOM05D000029 ORTHO05D003879 1.7e-21 108.6 129 49.6
A08p08250 Brassica napus HOM05D000029 ORTHO05D003879 3.8e-21 107.5 111 49.5
BraA08t32843Z Brassica rapa HOM05D000029 ORTHO05D003879 3.8e-21 107.5 111 49.5
Duzib116G0477 Durio zibethinus HOM05D000029 ORTHO05D003879 3.8e-21 107.5 128 50.0
EL10Ac1g00073 Beta vulgaris HOM05D000029 ORTHO05D003879 1.1e-20 105.9 135 45.2
BcaC07g37539 Brassica carinata HOM05D000029 ORTHO05D003879 4.2e-20 104.0 111 48.6
VMungo0464G0087 Vigna mungo HOM05D000029 ORTHO05D003879 4.2e-20 104.0 132 47.0
CDE06G2283 Ceratophyllum demersum HOM05D000029 ORTHO05D003879 5.5e-20 103.6 131 50.4
BolC8t47856H Brassica oleracea HOM05D000029 ORTHO05D003879 1.2e-19 102.4 111 47.7
Migut.N03343 Erythranthe guttata HOM05D000029 ORTHO05D003879 1.2e-19 102.4 131 47.3
MBI17_g15289_MAGBIO Magnolia biondii HOM05D000029 ORTHO05D003879 2.1e-19 101.7 125 47.2
AL1G48980 Arabidopsis lyrata HOM05D000029 ORTHO05D003879 6.1e-19 100.1 110 49.1
Nitab4.5_0010911g0010 Nicotiana tabacum HOM05D000029 ORTHO05D003879 8.0e-19 99.8 125 44.8
Thecc.08G181500 Theobroma cacao HOM05D000029 ORTHO05D003879 8.0e-19 99.8 116 51.7
Thhalv10006707m.g Eutrema salsugineum HOM05D000029 ORTHO05D003879 2.3e-18 98.2 111 45.9
Solyc11g017270.2 Solanum lycopersicum HOM05D000029 ORTHO05D003879 2.3e-18 98.2 123 43.9
Sp1g29610 Schrenkiella parvula HOM05D000029 ORTHO05D003879 5.2e-18 97.1 118 44.9
Lsat_1_v5_gn_1_10521 Lactuca sativa HOM05D000029 ORTHO05D003879 6.8e-18 96.7 137 43.8
AUR62004657 Chenopodium quinoa HOM05D000029 ORTHO05D003879 1.5e-17 95.5 118 44.1
ATR0152G022 Amborella trichopoda HOM05D000029 ORTHO05D003879 3.4e-17 94.4 119 47.1
ECA152G0004 Erigeron canadensis HOM05D005760 ORTHO05D007113 3.4e-17 94.4 133 44.4
Peaxi162Scf00310g00823 Petunia axillaris HOM05D000029 ORTHO05D003879 3.4e-17 94.4 124 42.7
Hund27081 Selenicereus undatus HOM05D000029 ORTHO05D003879 3.4e-17 94.4 125 47.2
AT1G34420 Arabidopsis thaliana HOM05D000029 ORTHO05D003879 4.4e-17 94.0 111 45.0
AUR62023574 Chenopodium quinoa HOM05D000029 ORTHO05D003879 4.4e-17 94.0 118 44.9
Carub.0001s3255 Capsella rubella HOM05D000029 ORTHO05D003879 1.3e-16 92.4 110 44.5
VMungo0464G0008 Vigna mungo HOM05D000029 ORTHO05D003879 1.4e-15 89.0 88 54.5
MBI09_g08446_MAGBIO Magnolia biondii HOM05D000029 ORTHO05D003879 4.1e-15 87.4 118 44.1
THA.LOC104806785 Tarenaya hassleriana HOM05D000029 ORTHO05D003879 9.1e-15 86.3 133 39.1
Eucgr.F04130 Eucalyptus grandis HOM05D000029 ORTHO05D003879 1.2e-14 85.9 131 44.3
Medtr1g096270 Medicago truncatula HOM05D000029 ORTHO05D003879 1.2e-14 85.9 119 42.0
Nn5g27753 Nelumbo nucifera HOM05D000029 ORTHO05D003879 3.5e-14 84.3 131 40.5
SGA_v2.0_scaffold149G36603 Striga asiatica HOM05D000029 ORTHO05D003879 2.2e-13 81.6 117 43.6
Os12g0182300 Oryza sativa ssp. japonica HOM05D000029 ORTHO05D003879 8.5e-13 79.7 122 40.2
HanXRQChr04g0107431 Helianthus annuus HOM05D000029 ORTHO05D003879 5.5e-12 77.0 114 43.9
PSO170G3318 Papaver somniferum HOM05D000029 ORTHO05D003879 5.5e-12 77.0 83 55.4
HanXRQChr04g0107461 Helianthus annuus HOM05D000029 ORTHO05D003879 7.2e-12 76.6 113 42.5
PSO782G3570 Papaver somniferum HOM05D000029 ORTHO05D003879 2.7e-11 74.7 133 40.6
HanXRQChr04g0107451 Helianthus annuus HOM05D000029 ORTHO05D003879 3.0e-10 71.2 113 39.8
SGA_v2.0_scaffold269G46247 Striga asiatica HOM05D000029 ORTHO05D001395 6.8e-10 70.1 114 39.5
Oeu030006.1 Olea europaea HOM05D016129 ORTHO05D003798 3.4e-09 67.8 124 41.1
EL10As1g23044 Beta vulgaris HOM05D000029 ORTHO05D003879 5.7e-09 67.0 124 36.3
CARHR033850 Cardamine hirsuta HOM05D000029 ORTHO05D003879 7.5e-09 66.6 59 52.5
PSO170G5730 Papaver somniferum HOM05D000029 ORTHO05D003879 6.3e-08 63.5 130 36.9
CiPaw.07G040300 Carya illinoinensis HOM05D000029 ORTHO05D001395 8.3e-08 63.2 114 37.7
Medtr4g130920 Medicago truncatula HOM05D000094 ORTHO05D004969 1.1e-07 62.8 126 32.5
SEGI_14999 Sequoiadendron giganteum HOM05D000021 ORTHO05D000010 5.4e-07 60.5 115 27.8
CSS0044598 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D003879 7.0e-07 60.1 137 62.8
SGA_v2.0_scaffold121G33091 Striga asiatica HOM05D000029 ORTHO05D001395 7.0e-07 60.1 115 37.4
AagrBONN_evm.TU.Sc2ySwM_117.1133 Anthoceros agrestis HOM05D001042 ORTHO05D002657 1.6e-06 58.9 115 35.7
Duzib168G0773 Durio zibethinus HOM05D000094 ORTHO05D004969 1.6e-06 58.9 94 31.9
Duzib187G1397 Durio zibethinus HOM05D000094 ORTHO05D004969 1.6e-06 58.9 94 34.0
PSO782G2115 Papaver somniferum HOM05D000029 ORTHO05D003879 1.6e-06 58.9 65 50.8
Nitab4.5_0006879g0020 Nicotiana tabacum HOM05D000094 ORTHO05D004969 2.0e-06 58.5 108 36.1
Thecc.09G031400 Theobroma cacao HOM05D000094 ORTHO05D004969 2.0e-06 58.5 94 31.9
CDE02G2357 Ceratophyllum demersum HOM05D000029 ORTHO05D002500 2.7e-06 58.2 113 34.5
TPR.G24870 Trifolium pratense HOM05D000094 ORTHO05D004969 2.7e-06 58.2 126 31.7
SEGI_30584 Sequoiadendron giganteum HOM05D000029 ORTHO05D002500 3.5e-06 57.8 123 35.8
Aa31LG6G15880 Aethionema arabicum HOM05D000094 ORTHO05D001414 4.5e-06 57.4 125 31.2
CSS0007630 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D003879 4.5e-06 57.4 128 60.9
CDE01G0019 Ceratophyllum demersum HOM05D000029 ORTHO05D002500 5.9e-06 57.0 113 31.9
Psat4g109440 Pisum sativum HOM05D000094 ORTHO05D004969 5.9e-06 57.0 96 32.3
BraA09t35994Z Brassica rapa HOM05D001042 ORTHO05D007836 7.7e-06 56.6 109 38.5
Sed0022739 Sechium edule HOM05D000094 ORTHO05D003883 7.7e-06 56.6 117 32.5


User provided reference genes

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