Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018195 Carpinus fangiana HOM05D007935 ORTHO05D007393 3.9e-88 328.2 173 100.0
Haze_17920 Corylus avellana HOM05D007935 ORTHO05D007393 7.1e-66 254.2 155 88.4
QL02p034017 Quercus lobata HOM05D007935 ORTHO05D007393 9.1e-37 157.5 176 59.7
CiPaw.16G062200 Carya illinoinensis HOM05D007935 ORTHO05D007393 4.8e-30 135.2 179 55.3
Lj2g0007380 Lotus japonicus HOM05D007935 ORTHO05D007393 1.3e-27 127.1 170 47.6
Thecc.08G181700 Theobroma cacao HOM05D007935 ORTHO05D007393 1.3e-27 127.1 165 50.9
Duzib177G0305 Durio zibethinus HOM05D007935 ORTHO05D007393 1.1e-26 124.0 169 46.2
Prupe.8G056300 Prunus persica HOM05D007935 ORTHO05D007393 4.2e-26 122.1 177 48.0
Potri.013G114000 Populus trichocarpa HOM05D007935 ORTHO05D007393 9.4e-26 120.9 181 48.6
CiPaw.15G082200 Carya illinoinensis HOM05D007935 ORTHO05D007393 2.7e-25 119.4 182 57.1
Manes.02G191100 Manihot esculenta HOM05D007935 ORTHO05D007393 4.7e-25 118.6 185 48.6
Dinv08012 Davidia involucrata HOM05D007935 ORTHO05D007393 1.0e-24 117.5 167 47.3
Potri.019G084500 Populus trichocarpa HOM05D007935 ORTHO05D007393 2.3e-24 116.3 182 45.6
CiPaw.15G082300 Carya illinoinensis HOM05D007935 ORTHO05D007393 3.0e-24 115.9 180 53.9
Phvul.004G084000 Phaseolus vulgaris HOM05D007935 ORTHO05D007393 5.2e-24 115.2 168 47.0
Sabra13G0096500 Salix brachista HOM05D007935 ORTHO05D007393 7.5e-23 111.3 185 46.5
Glyma.20G176200 Glycine max HOM05D007935 ORTHO05D007393 9.7e-23 110.9 173 46.8
Glyma.02G074300 Glycine max HOM05D007935 ORTHO05D007393 1.7e-22 110.2 172 45.9
Gohir.A09G117400 Gossypium hirsutum HOM05D007935 ORTHO05D007393 2.8e-22 109.4 178 48.3
Sabra19G0095700 Salix brachista HOM05D007935 ORTHO05D007393 4.1e-21 105.5 176 40.9
Glyma.10G215500 Glycine max HOM05D007935 ORTHO05D007393 7.0e-21 104.8 170 45.3
Lalb_Chr19g0129781 Lupinus albus HOM05D007935 ORTHO05D007393 9.1e-21 104.4 172 45.9
Gohir.D09G114200 Gossypium hirsutum HOM05D007935 ORTHO05D007393 1.6e-20 103.6 178 47.2
COL.COLO4_16292 Corchorus olitorius HOM05D007935 ORTHO05D007393 2.0e-20 103.2 176 41.5
Manes.18G100400 Manihot esculenta HOM05D007935 ORTHO05D007393 2.6e-20 102.8 187 44.4
Gorai.006G131900 Gossypium raimondii HOM05D007935 ORTHO05D007393 3.5e-20 102.4 178 47.2
Glyma.16G156000 Glycine max HOM05D007935 ORTHO05D007393 1.0e-19 100.9 172 44.2
Cpa.g.sc66.51 Carica papaya HOM05D007935 ORTHO05D007393 5.0e-19 98.6 172 40.7
Atru.chr13.1798 Acer truncatum HOM05D007935 ORTHO05D007393 1.9e-18 96.7 176 44.3
Lalb_Chr01g0010021 Lupinus albus HOM05D007935 ORTHO05D007393 2.5e-18 96.3 165 39.4
Nn5g27748 Nelumbo nucifera HOM05D007935 ORTHO05D007393 7.2e-18 94.7 183 36.6
TAR628G0171 Trochodendron aralioides HOM05D007935 ORTHO05D007393 1.6e-17 93.6 181 38.1
FvH4_4g19940 Fragaria vesca HOM05D007935 ORTHO05D007393 2.7e-17 92.8 175 42.9
TWI32G0406 Tripterygium wilfordii HOM05D007935 ORTHO05D007393 4.7e-17 92.0 166 38.6
FAN12G0476 Fragaria x ananassa HOM05D007935 ORTHO05D007393 8.0e-17 91.3 177 41.8
Dinv41698 Davidia involucrata HOM05D007935 ORTHO05D007393 1.0e-16 90.9 156 46.8
Migut.C01245 Erythranthe guttata HOM05D007935 ORTHO05D007393 1.0e-16 90.9 172 37.2
ClCG09G010460 Citrullus lanatus HOM05D029613 ORTHO05D007393 2.3e-16 89.7 169 40.2
arahy.Tifrunner.gnm1.ann1.B1B3Q7 Arachis hypogaea HOM05D007935 ORTHO05D007393 3.0e-16 89.4 171 42.1
arahy.Tifrunner.gnm1.ann1.QZIQ5C Arachis hypogaea HOM05D007935 ORTHO05D007393 5.2e-16 88.6 171 42.7
Rhsim06G0096700 Rhododendron simsii HOM05D007935 ORTHO05D007393 5.2e-16 88.6 179 41.3
Medtr1g096290 Medicago truncatula HOM05D007935 ORTHO05D007393 1.5e-15 87.0 168 35.7
TAR376G0933 Trochodendron aralioides HOM05D007935 ORTHO05D007393 2.6e-15 86.3 179 37.4
Sopen11g009330 Solanum pennellii HOM05D007935 ORTHO05D007393 7.5e-15 84.7 160 42.5
AUR62004654 Chenopodium quinoa HOM05D007935 ORTHO05D007393 1.7e-14 83.6 183 38.3
Nn1g08393 Nelumbo nucifera HOM05D007935 ORTHO05D007393 3.7e-14 82.4 184 37.5
Solyc11g017390.2 Solanum lycopersicum HOM05D007935 ORTHO05D007393 3.7e-14 82.4 161 36.6
FAN07G1822 Fragaria x ananassa HOM05D007935 ORTHO05D007393 1.1e-13 80.9 185 38.4
Peaxi162Scf00310g00073 Petunia axillaris HOM05D007935 ORTHO05D007393 1.1e-13 80.9 189 37.0
PGR102G0669 Punica granatum HOM05D007935 ORTHO05D007393 1.1e-13 80.9 176 38.6
PGSC0003DMG400009223 Solanum tuberosum HOM05D007935 ORTHO05D007393 1.4e-13 80.5 167 37.7
Eucgr.F04128 Eucalyptus grandis HOM05D007935 ORTHO05D007393 9.1e-13 77.8 179 38.5
TPR.G39557 Trifolium pratense HOM05D007935 ORTHO05D007393 1.6e-12 77.0 167 34.7
Hma1.2p1_0363F.1_g136610 Hydrangea macrophylla HOM05D007935 ORTHO05D007393 3.5e-12 75.9 172 41.3
RcHm_v2.0_Chr6g0272051 Rosa chinensis HOM05D007935 ORTHO05D007393 4.5e-12 75.5 169 38.5
Nitab4.5_0000422g0110 Nicotiana tabacum HOM05D007935 ORTHO05D007393 7.7e-12 74.7 199 36.2
Oeu017878.1 Olea europaea HOM05D007935 ORTHO05D007393 7.7e-12 74.7 168 36.9
Ciclev10003091m.g Citrus clementina HOM05D007935 ORTHO05D007393 1.3e-11 73.9 157 42.7
Nitab4.5_0000560g0100 Nicotiana tabacum HOM05D007935 ORTHO05D007393 1.3e-11 73.9 188 33.0
Oeu039600.1 Olea europaea HOM05D007935 ORTHO05D007393 1.7e-11 73.6 168 35.7
Manes.12G081400 Manihot esculenta HOM05D009958 ORTHO05D007393 3.8e-11 72.4 176 33.5
Sed0011111 Sechium edule HOM05D029613 ORTHO05D007393 8.5e-11 71.2 173 36.4
QL10p037244 Quercus lobata HOM05D009958 ORTHO05D007393 1.1e-10 70.9 178 34.3
QL10p038114 Quercus lobata HOM05D009958 ORTHO05D007393 1.1e-10 70.9 178 34.3
VMungo0464G1609 Vigna mungo HOM05D007935 ORTHO05D007393 1.1e-10 70.9 172 40.7
CsaV3_2G033460 Cucumis sativus L. HOM05D030816 ORTHO05D028878 1.9e-10 70.1 176 37.5
Lj5g0011924 Lotus japonicus HOM05D007935 ORTHO05D007393 3.2e-10 69.3 169 36.7
MELO3C008117.2 Cucumis melo HOM05D030816 ORTHO05D028878 4.2e-10 68.9 160 36.2
arahy.Tifrunner.gnm1.ann1.DLN685 Arachis hypogaea HOM05D007935 ORTHO05D007393 5.5e-10 68.6 172 39.5
CSS0018652 Camellia sinensis var. sinensis HOM05D007935 ORTHO05D007393 5.5e-10 68.6 169 37.3
FAN24G0793 Fragaria x ananassa HOM05D007935 ORTHO05D007393 2.1e-09 66.6 120 41.7
Oeu052900.1 Olea europaea HOM05D009958 ORTHO05D007393 3.6e-09 65.9 169 33.7
SalBow7G1894 Salvia bowleyana HOM05D007935 ORTHO05D007393 3.6e-09 65.9 168 32.7
EL10Ac1g00075 Beta vulgaris HOM05D007935 ORTHO05D007393 8.0e-09 64.7 140 39.3
Phvul.007G090200 Phaseolus vulgaris HOM05D007935 ORTHO05D007393 8.0e-09 64.7 172 38.4
FAN20G0410 Fragaria x ananassa HOM05D007935 ORTHO05D007393 1.0e-08 64.3 169 37.9
Sp5g26980 Schrenkiella parvula HOM05D010479 ORTHO05D007393 2.3e-08 63.2 187 33.2
AL2G31520 Arabidopsis lyrata HOM05D010479 ORTHO05D007393 4.0e-08 62.4 185 32.4
Thhalv10019217m.g Eutrema salsugineum HOM05D010479 ORTHO05D007393 5.2e-08 62.0 185 32.4
Carub.0002s1869 Capsella rubella HOM05D010479 ORTHO05D007393 8.8e-08 61.2 191 30.9
COL.COLO4_33532 Corchorus olitorius HOM05D009958 ORTHO05D007393 1.2e-07 60.8 185 34.6
Manes.13G153300 Manihot esculenta HOM05D009958 ORTHO05D007393 1.5e-07 60.5 165 35.2
Cpa.g.sc138.32 Carica papaya HOM05D009958 ORTHO05D007393 2.0e-07 60.1 166 30.7
Sc23g0001170 Simmondsia chinensis HOM05D007935 ORTHO05D007393 2.0e-07 60.1 139 37.4
Psat6g186560 Pisum sativum HOM05D007935 ORTHO05D007393 7.5e-07 58.2 171 32.7
BcaB05g24691 Brassica carinata HOM05D010479 ORTHO05D007393 9.8e-07 57.8 180 32.2
Lj4P515T30 Lonicera japonica HOM05D007935 ORTHO05D007393 9.8e-07 57.8 123 35.8
Thecc.01G147200 Theobroma cacao HOM05D009958 ORTHO05D007393 9.8e-07 57.8 185 34.1
BcaC03g15309 Brassica carinata HOM05D010479 ORTHO05D007393 1.3e-06 57.4 184 31.5
BolC2t08970H Brassica oleracea HOM05D010479 ORTHO05D007393 1.3e-06 57.4 184 31.5
THA.LOC104810516 Tarenaya hassleriana HOM05D010479 ORTHO05D007393 1.7e-06 57.0 175 32.6
ClCG11G008210 Citrullus lanatus HOM05D030816 ORTHO05D028878 2.2e-06 56.6 168 33.9
Haze_19351 Corylus avellana HOM05D009958 ORTHO05D007393 2.2e-06 56.6 177 33.9
CARHR064730 Cardamine hirsuta HOM05D010479 ORTHO05D007393 2.8e-06 56.2 184 31.0
Lj4P507T35 Lonicera japonica HOM05D007935 ORTHO05D007393 2.8e-06 56.2 123 35.0
Duzib264G0789 Durio zibethinus HOM05D009958 ORTHO05D007393 4.9e-06 55.5 191 29.3


User provided reference genes

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