Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018194 Carpinus fangiana HOM05D004678 ORTHO05D005880 1.7e-246 855.5 426 100.0
CiPaw.16G062100 Carya illinoinensis HOM05D004678 ORTHO05D005880 4.4e-226 787.7 426 91.5
QL02p033997 Quercus lobata HOM05D004678 ORTHO05D005880 3.3e-221 771.5 428 89.5
QL04p000013 Quercus lobata HOM05D004678 ORTHO05D005880 4.3e-221 771.2 428 89.5
CiPaw.15G082000 Carya illinoinensis HOM05D004678 ORTHO05D005880 1.2e-220 769.6 426 88.5
QL04p003199 Quercus lobata HOM05D004678 ORTHO05D005880 6.8e-219 763.8 443 86.7
MD12G1021300 Malus domestica HOM05D004678 ORTHO05D005880 2.3e-206 722.2 427 84.5
Ciclev10001274m.g Citrus clementina HOM05D004678 ORTHO05D005880 1.1e-205 719.9 424 82.8
Prupe.6G194700 Prunus persica HOM05D004678 ORTHO05D005880 4.3e-205 718.0 426 82.9
TAR381G1101 Trochodendron aralioides HOM05D004678 ORTHO05D005880 1.6e-204 716.1 426 83.3
Phvul.004G083900 Phaseolus vulgaris HOM05D004678 ORTHO05D005880 1.8e-203 712.6 427 82.0
Glyma.16G155800 Glycine max HOM05D004678 ORTHO05D005880 1.5e-202 709.5 427 82.0
VMungo0464G0500 Vigna mungo HOM05D004678 ORTHO05D005880 2.0e-202 709.1 426 81.2
CSS0026818 Camellia sinensis var. sinensis HOM05D004678 ORTHO05D005880 5.8e-202 707.6 425 82.8
CANSAT21G1357 Cannabis sativa HOM05D004678 ORTHO05D005880 4.9e-201 704.5 423 81.1
Duzib177G0967 Durio zibethinus HOM05D004678 ORTHO05D005880 8.4e-201 703.7 430 81.2
Hund16801 Selenicereus undatus HOM05D004678 ORTHO05D005880 8.4e-201 703.7 426 80.5
Hund27082 Selenicereus undatus HOM05D004678 ORTHO05D005880 1.1e-200 703.4 431 80.5
Lalb_Chr01g0010011 Lupinus albus HOM05D004678 ORTHO05D005880 1.9e-200 702.6 426 82.4
Manes.02G191200 Manihot esculenta HOM05D004678 ORTHO05D005880 4.1e-200 701.4 427 81.3
Thecc.08G181800 Theobroma cacao HOM05D004678 ORTHO05D005880 4.1e-200 701.4 433 79.9
Aqoxy6G00120 Aquilegia oxysepala HOM05D004678 ORTHO05D005880 5.4e-200 701.0 424 81.4
Potri.013G113900 Populus trichocarpa HOM05D004678 ORTHO05D005880 9.2e-200 700.3 429 81.4
LjContig00222g0007085 Lotus japonicus HOM05D004678 ORTHO05D005880 2.1e-199 699.1 426 81.7
ClCG09G010470 Citrullus lanatus HOM05D004678 ORTHO05D005880 1.7e-198 696.0 426 81.0
Eucgr.G01597 Eucalyptus grandis HOM05D004678 ORTHO05D005880 6.6e-198 694.1 425 82.4
ClCG07G016110 Citrullus lanatus HOM05D004678 ORTHO05D005880 8.7e-198 693.7 429 80.9
Eucgr.L00028 Eucalyptus grandis HOM05D004678 ORTHO05D005880 4.3e-197 691.4 425 81.6
FAN03G3192 Fragaria x ananassa HOM05D004678 ORTHO05D005880 5.6e-197 691.0 429 80.2
Gohir.D09G114300 Gossypium hirsutum HOM05D004678 ORTHO05D005880 5.6e-197 691.0 430 79.5
Sc23g0001180 Simmondsia chinensis HOM05D004678 ORTHO05D005880 1.6e-196 689.5 421 79.6
FvH4_7g02740 Fragaria vesca HOM05D004678 ORTHO05D005880 2.8e-196 688.7 429 80.0
PGR142G3802 Punica granatum HOM05D004678 ORTHO05D005880 2.8e-196 688.7 424 80.9
COL.COLO4_19882 Corchorus olitorius HOM05D004678 ORTHO05D005880 6.2e-196 687.6 426 79.8
FAN06G1846 Fragaria x ananassa HOM05D004678 ORTHO05D005880 6.2e-196 687.6 429 80.0
CsaV3_7G024070 Cucumis sativus L. HOM05D004678 ORTHO05D005880 8.1e-196 687.2 426 80.5
FAN10G3317 Fragaria x ananassa HOM05D004678 ORTHO05D005880 1.4e-195 686.4 429 79.7
Hma1.2p1_0285F.1_g113940 Hydrangea macrophylla HOM05D004678 ORTHO05D005880 1.4e-195 686.4 443 80.1
Gohir.A09G117500 Gossypium hirsutum HOM05D004678 ORTHO05D005880 3.1e-195 685.3 430 79.1
MELO3C023659.2 Cucumis melo HOM05D004678 ORTHO05D005880 1.5e-194 682.9 398 84.4
Actinidia04312 Actinidia chinensis HOM05D004678 ORTHO05D005880 1.3e-193 679.9 426 81.0
Hma1.2p1_1487F.1_g286570 Hydrangea macrophylla HOM05D004678 ORTHO05D005880 1.3e-193 679.9 434 79.3
GSVIVG01034496001 Vitis vinifera HOM05D004678 ORTHO05D005880 1.3e-193 679.9 374 88.8
RcHm_v2.0_Chr1g0322001 Rosa chinensis HOM05D004678 ORTHO05D005880 2.2e-193 679.1 428 79.4
TWI34G1123 Tripterygium wilfordii HOM05D004678 ORTHO05D005880 3.8e-193 678.3 426 79.1
Medtr6g033540 Medicago truncatula HOM05D004678 ORTHO05D005880 8.4e-193 677.2 430 79.1
DCAR_026915 Daucus carota HOM05D004678 ORTHO05D005880 5.4e-192 674.5 430 80.0
Lsat_1_v5_gn_9_80761 Lactuca sativa HOM05D004678 ORTHO05D005880 7.1e-192 674.1 426 77.9
TPR.G36715 Trifolium pratense HOM05D004678 ORTHO05D005880 7.1e-192 674.1 429 79.0
EL10Ac1g00076 Beta vulgaris HOM05D004678 ORTHO05D005880 9.3e-192 673.7 446 76.2
Sabra13G0096400 Salix brachista HOM05D004678 ORTHO05D005880 1.2e-191 673.3 433 78.8
Ca_07561_v3 Cicer arietinum L. HOM05D004678 ORTHO05D005880 4.6e-191 671.4 427 79.6
Cc02_g14680 Coffea canephora HOM05D004678 ORTHO05D005880 1.3e-190 669.8 440 77.7
Lj3A851T66 Lonicera japonica HOM05D004678 ORTHO05D005880 1.3e-190 669.8 457 76.4
SGA_v2.0_scaffold8G04287 Striga asiatica HOM05D004678 ORTHO05D005880 2.3e-190 669.1 459 74.3
AUR62023572 Chenopodium quinoa HOM05D004678 ORTHO05D005880 3.0e-190 668.7 432 76.9
SalBow2G0558 Salvia bowleyana HOM05D004678 ORTHO05D005880 6.6e-190 667.5 436 77.5
SalBow2G2825 Salvia bowleyana HOM05D004678 ORTHO05D005880 6.6e-190 667.5 436 77.5
Solyc04g009350.3 Solanum lycopersicum HOM05D004678 ORTHO05D005880 1.9e-189 666.0 424 78.1
Sopen04g004470 Solanum pennellii HOM05D004678 ORTHO05D005880 3.3e-189 665.2 424 78.1
Cpa.g.sc36.40 Carica papaya HOM05D004678 ORTHO05D005880 4.3e-189 664.8 426 77.2
Nitab4.5_0002113g0110 Nicotiana tabacum HOM05D004678 ORTHO05D005880 4.3e-189 664.8 433 76.4
Peaxi162Scf00760g00021 Petunia axillaris HOM05D004678 ORTHO05D005880 5.6e-189 664.5 430 77.2
HanXRQChr14g0428861 Helianthus annuus HOM05D004678 ORTHO05D005880 7.3e-189 664.1 424 79.0
PGSC0003DMG400032541 Solanum tuberosum HOM05D004678 ORTHO05D005880 9.6e-189 663.7 424 77.8
Haze_17921 Corylus avellana HOM05D004678 ORTHO05D005880 3.6e-188 661.8 493 72.2
HanXRQChr06g0184941 Helianthus annuus HOM05D004678 ORTHO05D005880 1.4e-187 659.8 424 79.2
Oeu044536.1 Olea europaea HOM05D004678 ORTHO05D005880 2.4e-187 659.1 438 76.9
Atru.chr13.1797 Acer truncatum HOM05D004678 ORTHO05D005880 5.3e-187 657.9 384 84.1
MSTRG.13391 Avicennia marina HOM05D004678 ORTHO05D005880 6.9e-187 657.5 431 76.8
PSO017G6114 Papaver somniferum HOM05D004678 ORTHO05D005880 6.9e-187 657.5 428 77.8
Nitab4.5_0007261g0010 Nicotiana tabacum HOM05D004678 ORTHO05D005880 1.2e-186 656.8 461 72.5
TWI32G0349 Tripterygium wilfordii HOM05D004678 ORTHO05D005880 1.2e-186 656.8 377 83.3
PSO063G1958 Papaver somniferum HOM05D004678 ORTHO05D005880 2.9e-185 652.1 375 84.3
Migut.L01374 Erythranthe guttata HOM05D004678 ORTHO05D005880 3.8e-185 651.7 436 75.0
ECA236G1055 Erigeron canadensis HOM05D004678 ORTHO05D005880 4.9e-185 651.4 424 77.8
arahy.Tifrunner.gnm1.ann1.7PLX29 Arachis hypogaea HOM05D004678 ORTHO05D005880 3.2e-184 648.7 428 76.9
ATR0152G001 Amborella trichopoda HOM05D004678 ORTHO05D005880 5.4e-184 647.9 364 85.4
THA.LOC104800109 Tarenaya hassleriana HOM05D004678 ORTHO05D005880 9.3e-184 647.1 423 76.1
Rhsim09G0073000 Rhododendron simsii HOM05D004678 ORTHO05D005880 2.1e-183 646.0 483 70.0
Zm00001eb252330 Zea mays HOM05D004678 ORTHO05D005880 1.8e-182 642.9 383 82.5
arahy.Tifrunner.gnm1.ann1.57RIKC Arachis hypogaea HOM05D004678 ORTHO05D005880 2.3e-182 642.5 430 76.0
AT5G10330 Arabidopsis thaliana HOM05D004678 ORTHO05D005880 6.7e-182 641.0 423 75.2
CDE04G3296 Ceratophyllum demersum HOM05D004678 ORTHO05D005880 8.7e-182 640.6 430 75.8
AL2G31530 Arabidopsis lyrata HOM05D004678 ORTHO05D005880 3.3e-181 638.6 423 74.9
CAN.G624.22 Capsicum annuum HOM05D004678 ORTHO05D005880 7.4e-181 637.5 397 80.1
Sp5g26990 Schrenkiella parvula HOM05D004678 ORTHO05D005880 4.0e-179 631.7 423 74.0
Carub.0002s1870 Capsella rubella HOM05D004678 ORTHO05D005880 6.9e-179 630.9 423 74.2
Aa31LG4G8700 Aethionema arabicum HOM05D004678 ORTHO05D005880 1.5e-178 629.8 423 74.2
BcaB03g14912 Brassica carinata HOM05D004678 ORTHO05D005880 2.6e-178 629.0 404 76.2
Os02g0709200 Oryza sativa ssp. japonica HOM05D004678 ORTHO05D005880 2.6e-178 629.0 361 84.2
AT1G71920 Arabidopsis thaliana HOM05D004678 ORTHO05D005880 3.4e-178 628.6 423 74.2
Thhalv10007345m.g Eutrema salsugineum HOM05D004678 ORTHO05D005880 3.4e-178 628.6 423 73.3
unitig_699.g19496 Utricularia gibba HOM05D004678 ORTHO05D005880 2.2e-177 625.9 369 81.6
Ah.05g178040 Amaranthus hybridus HOM05D004678 ORTHO05D005880 2.9e-177 625.5 468 69.7
BcaC08g46628 Brassica carinata HOM05D004678 ORTHO05D005880 3.8e-177 625.2 367 81.5
BcaC03g15310 Brassica carinata HOM05D004678 ORTHO05D005880 4.2e-176 621.7 359 83.3
CARHR064740 Cardamine hirsuta HOM05D004678 ORTHO05D005880 4.2e-176 621.7 385 78.7
BcaB05g24693 Brassica carinata HOM05D004678 ORTHO05D005880 1.6e-175 619.8 359 83.8
Gorai.006G132200 Gossypium raimondii HOM05D004678 ORTHO05D005880 4.6e-175 618.2 386 79.8
BcaC08g46629 Brassica carinata HOM05D004678 ORTHO05D005880 1.3e-174 616.7 359 82.5
BraA07t31374Z Brassica rapa HOM05D004678 ORTHO05D005880 1.3e-174 616.7 379 78.9
AUR62004653 Chenopodium quinoa HOM05D004678 ORTHO05D005880 8.7e-174 614.0 424 73.6
C06p45990 Brassica napus HOM05D004678 ORTHO05D005880 1.5e-173 613.2 368 80.2
BolC6t39653H Brassica oleracea HOM05D004678 ORTHO05D005880 1.5e-173 613.2 368 80.2
C02p29210 Brassica napus HOM05D004678 ORTHO05D005880 2.5e-173 612.5 372 80.4
BolC2t08971H Brassica oleracea HOM05D004678 ORTHO05D005880 2.5e-173 612.5 372 80.4
A02p17560 Brassica napus HOM05D004678 ORTHO05D005880 3.3e-173 612.1 359 82.5
BraA02t06800Z Brassica rapa HOM05D004678 ORTHO05D005880 3.3e-173 612.1 359 82.5
A07p38090 Brassica napus HOM05D004678 ORTHO05D005880 5.6e-173 611.3 430 71.2
Dinv30099 Davidia involucrata HOM05D004678 ORTHO05D005880 4.2e-168 595.1 340 87.4
BcaB05g24692 Brassica carinata HOM05D004678 ORTHO05D005880 4.2e-160 568.5 359 78.3
HPP92_016059 Vanilla planifolia HOM05D004678 ORTHO05D005880 2.1e-159 566.2 345 80.6
Nn6g34909 Nelumbo nucifera HOM05D004678 ORTHO05D005880 2.3e-150 536.2 426 66.4
Mapoly0007s0122 Marchantia polymorpha HOM05D004678 ORTHO05D005880 8.8e-150 534.3 381 68.5
MD14G1018500 Malus domestica HOM05D004678 ORTHO05D005880 3.3e-149 532.3 430 67.9
SMO343G0150 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 9.7e-149 530.8 362 70.4
Pp3c19_9420 Physcomitrium patens HOM05D004678 ORTHO05D005880 8.2e-148 527.7 381 66.9
Sed0015109 Sechium edule HOM05D004678 ORTHO05D005880 1.5e-146 523.5 339 76.1
Sopen11g017200 Solanum pennellii HOM05D004678 ORTHO05D005880 3.8e-137 492.3 309 78.3
Cre16.g672385 Chlamydomonas reinhardtii HOM05D004678 ORTHO05D005880 4.7e-135 485.3 358 65.4
PRCOL_00004069 Prasinoderma coloniale HOM05D004678 ORTHO05D005880 6.1e-127 458.4 350 62.3
Medtr6g033600 Medicago truncatula HOM05D004678 ORTHO05D005880 4.5e-122 442.2 255 84.7
Psat1g098720 Pisum sativum HOM05D004678 ORTHO05D005880 7.7e-122 441.4 311 73.0
MCO01G265 Micromonas commoda HOM05D004678 ORTHO05D005880 2.3e-121 439.9 365 58.6
TAR629G2521 Trochodendron aralioides HOM05D004678 ORTHO05D005880 8.6e-121 438.0 310 73.9
Ca_29915_v3 Cicer arietinum L. HOM05D004678 ORTHO05D005880 6.6e-113 411.8 253 80.6
AagrBONN_evm.TU.Sc2ySwM_362.1592 Anthoceros agrestis HOM05D004678 ORTHO05D005880 2.3e-105 386.7 264 70.5
HPP92_016095 Vanilla planifolia HOM05D004678 ORTHO05D005880 7.3e-104 381.7 385 55.3
CDE07G1916 Ceratophyllum demersum HOM05D004678 ORTHO05D005880 2.6e-101 373.2 262 72.1
Cfa005301 Carpinus fangiana HOM05D004678 ORTHO05D005880 1.2e-93 347.8 178 96.6
Nitab4.5_0003152g0020 Nicotiana tabacum HOM05D004678 ORTHO05D005880 2.9e-92 343.2 422 48.1
Cfa009297 Carpinus fangiana HOM05D004678 ORTHO05D005880 1.9e-91 340.5 179 94.4
Prupe.8G056800 Prunus persica HOM05D004678 ORTHO05D005880 7.3e-80 302.0 381 48.8
GSVIVG01025260001 Vitis vinifera HOM05D004678 ORTHO05D005880 1.2e-79 301.2 170 88.8
MBI17_g38771_MAGBIO Magnolia biondii HOM05D004678 ORTHO05D005880 8.1e-71 271.9 209 69.9
MBI17_g42088_MAGBIO Magnolia biondii HOM05D004678 ORTHO05D005880 8.1e-71 271.9 209 69.9
DCAR_023441 Daucus carota HOM05D004678 ORTHO05D005880 3.2e-59 233.4 159 75.5
GSVIVG01025261001 Vitis vinifera HOM05D004678 ORTHO05D005880 5.1e-57 226.1 124 84.7
CBR_g40358 Chara braunii HOM05D000019 ORTHO05D000048 1.8e-54 217.6 131 77.1
SMO367G0035 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 2.3e-49 200.7 128 74.2
Solyc11g040030.3 Solanum lycopersicum HOM05D004678 ORTHO05D005880 2.6e-45 187.2 177 59.9
SHI09056 Sapria himalayana HOM05D004678 ORTHO05D005880 1.5e-37 161.4 86 88.4
SMO035G0001 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 1.0e-36 158.7 182 54.9
Cfa024628 Carpinus fangiana HOM05D004678 ORTHO05D005880 1.7e-36 157.9 375 32.0
SHI09055 Sapria himalayana HOM05D004678 ORTHO05D005880 5.0e-36 156.4 94 80.9
PGSC0003DMG400008416 Solanum tuberosum HOM05D004678 ORTHO05D005880 5.1e-33 146.4 134 57.5
Psat0s2699g0120 Pisum sativum HOM05D004678 ORTHO05D005880 5.7e-32 142.9 77 88.3
SMO343G0161 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 5.0e-28 129.8 121 57.0
CAN.G137.23 Capsicum annuum HOM05D004678 ORTHO05D000493 8.5e-28 129.0 168 45.8
DCAR_023442 Daucus carota HOM05D007059 ORTHO05D008600 1.2e-26 125.2 127 53.5
CDE07G1051 Ceratophyllum demersum HOM05D004678 ORTHO05D043902 1.8e-22 111.3 79 70.9
Psat0s2699g0200 Pisum sativum HOM05D004678 ORTHO05D043902 4.8e-15 86.7 50 82.0
PRCOL_00006728 Prasinoderma coloniale HOM05D004678 ORTHO05D333305 2.0e-13 81.3 402 25.4
COL.COLO4_19765 Corchorus olitorius HOM05D004678 ORTHO05D005880 3.8e-12 77.0 39 84.6
Pp3s32_480 Physcomitrium patens HOM05D003605 ORTHO05D309393 1.5e-11 75.1 205 29.3
Lsat_1_v5_gn_7_11140 Lactuca sativa HOM05D002771 ORTHO05D003078 6.1e-10 69.7 256 26.6
Phvul.009G122800 Phaseolus vulgaris HOM05D002771 ORTHO05D003078 6.1e-10 69.7 295 23.7
Pp3s46_180 Physcomitrium patens HOM05D002465 ORTHO05D028651 6.1e-10 69.7 344 22.4
Cpa.g.sc36.33 Carica papaya HOM05D002771 ORTHO05D003078 1.0e-09 68.9 251 23.1
VMungo1309G1294 Vigna mungo HOM05D002771 ORTHO05D003078 1.4e-09 68.6 244 24.2
CBR_g36553 Chara braunii HOM05D003605 ORTHO05D003078 1.8e-09 68.2 163 29.4
Mapoly0192s0009 Marchantia polymorpha HOM05D004697 ORTHO05D006015 3.4e-08 63.9 299 24.4
Pp3c20_8270 Physcomitrium patens HOM05D004697 ORTHO05D006015 3.4e-08 63.9 300 24.3
Nitab4.5_0001520g0040 Nicotiana tabacum HOM05D004678 ORTHO05D012214 4.4e-08 63.5 29 96.6
CiPaw.03G138800 Carya illinoinensis HOM05D003605 ORTHO05D004292 5.7e-08 63.2 301 24.3
Lj1A20T48 Lonicera japonica HOM05D002771 ORTHO05D003078 5.7e-08 63.2 227 24.7
Lalb_Chr21g0309431 Lupinus albus HOM05D002771 ORTHO05D003078 5.7e-08 63.2 254 26.4
Eucgr.F04444 Eucalyptus grandis HOM05D002771 ORTHO05D003078 7.5e-08 62.8 289 23.9
Eucgr.F04446 Eucalyptus grandis HOM05D002771 ORTHO05D003078 7.5e-08 62.8 289 23.9
Manes.01G225000 Manihot esculenta HOM05D002771 ORTHO05D003078 1.3e-07 62.0 275 24.0
Potri.014G124100 Populus trichocarpa HOM05D002771 ORTHO05D003078 2.2e-07 61.2 253 23.3
DCAR_012361 Daucus carota HOM05D002771 ORTHO05D003078 4.9e-07 60.1 231 24.7
ECA236G0232 Erigeron canadensis HOM05D002771 ORTHO05D003078 1.1e-06 58.9 259 24.3
Ca_07941_v3 Cicer arietinum L. HOM05D000418 ORTHO05D000317 4.1e-06 57.0 171 27.5
CAN.G933.13 Capsicum annuum HOM05D002015 ORTHO05D017741 5.4e-06 56.6 57 49.1
PGSC0003DMG400021651 Solanum tuberosum HOM05D000418 ORTHO05D000317 5.4e-06 56.6 164 25.6
SGA_v2.0_scaffold279G46822 Striga asiatica HOM05D004697 ORTHO05D006015 5.4e-06 56.6 182 24.2
SHI09057 Sapria himalayana HOM05D004678 ORTHO05D005880 7.0e-06 56.2 67 46.3
Ah.01g021080 Amaranthus hybridus HOM05D004697 ORTHO05D006015 9.1e-06 55.8 296 23.3
Lsat_1_v5_gn_4_104321 Lactuca sativa HOM05D004697 ORTHO05D006015 9.1e-06 55.8 209 23.9


User provided reference genes

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