Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018193 Carpinus fangiana HOM05D012719 ORTHO05D011609 4.6e-183 644.4 328 100.0
Haze_17923 Corylus avellana HOM05D012719 ORTHO05D011609 6.5e-161 570.9 324 90.4
Haze_17921 Corylus avellana HOM05D004678 ORTHO05D005880 1.4e-150 536.6 317 88.3
Cfa018190 Carpinus fangiana HOM05D012719 ORTHO05D011609 3.0e-73 279.6 163 90.8
Potri.013G113800 Populus trichocarpa HOM05D012719 ORTHO05D011609 5.1e-65 252.3 329 47.7
Thecc.08G181900 Theobroma cacao HOM05D011855 ORTHO05D011609 4.1e-62 242.7 331 48.3
Potri.019G084400 Populus trichocarpa HOM05D012719 ORTHO05D011609 2.6e-61 240.0 297 51.2
Nn5g27743 Nelumbo nucifera HOM05D011855 ORTHO05D011609 6.5e-44 182.2 328 38.7
AUR62023571 Chenopodium quinoa HOM05D012719 ORTHO05D011609 8.5e-44 181.8 326 36.5
Dinv41697 Davidia involucrata HOM05D011855 ORTHO05D011609 1.6e-42 177.6 215 50.2
AUR62004652 Chenopodium quinoa HOM05D012719 ORTHO05D011609 1.5e-40 171.0 314 36.0
Ah.05g178050 Amaranthus hybridus HOM05D012719 ORTHO05D011609 6.3e-39 165.6 336 37.2
COL.COLO4_19764 Corchorus olitorius HOM05D012719 ORTHO05D011609 2.0e-37 160.6 351 35.9
Cpa.g.sc66.50 Carica papaya HOM05D011855 ORTHO05D011609 5.5e-35 152.5 349 37.0
Sc01g0001740 Simmondsia chinensis HOM05D011855 ORTHO05D011609 2.0e-32 144.1 337 31.8
Nitab4.5_0000560g0170 Nicotiana tabacum HOM05D011855 ORTHO05D011609 1.7e-28 131.0 331 30.5
Solyc11g017410.1 Solanum lycopersicum HOM05D011855 ORTHO05D011609 1.0e-25 121.7 333 29.1
CAN.G370.24 Capsicum annuum HOM05D011855 ORTHO05D011609 3.0e-25 120.2 303 29.7
PGSC0003DMG400009225 Solanum tuberosum HOM05D011855 ORTHO05D011609 6.8e-25 119.0 301 31.2
Sopen11g009360 Solanum pennellii HOM05D011855 ORTHO05D011609 2.4e-22 110.5 305 29.5
HPP92_011411 Vanilla planifolia HOM05D012719 ORTHO05D011609 7.0e-22 109.0 302 29.8
HPP92_004458 Vanilla planifolia HOM05D012719 ORTHO05D011609 8.6e-20 102.1 299 31.1
HPP92_016119 Vanilla planifolia HOM05D012719 ORTHO05D011609 1.1e-19 101.7 325 28.6
Cc10_g11370 Coffea canephora HOM05D011855 ORTHO05D011609 8.3e-15 85.5 272 29.0
ATR0152G020 Amborella trichopoda HOM05D011855 ORTHO05D011609 7.0e-14 82.4 297 28.6
Os11g0198200 Oryza sativa ssp. japonica HOM05D065905 ORTHO05D011609 1.2e-10 71.6 342 23.4
Zm00001eb168890 Zea mays HOM05D065905 ORTHO05D011609 1.2e-10 71.6 355 22.8
Duzib093G2137 Durio zibethinus HOM05D002421 ORTHO05D002560 3.4e-08 63.5 328 25.3
PGSC0003DMG400006547 Solanum tuberosum HOM05D002421 ORTHO05D002560 4.4e-08 63.2 325 24.0
Actinidia02590 Actinidia chinensis HOM05D002421 ORTHO05D002560 5.8e-08 62.8 325 24.6
Lalb_Chr15g0090671 Lupinus albus HOM05D002421 ORTHO05D002560 5.8e-08 62.8 307 25.1
Medtr8g088750 Medicago truncatula HOM05D002421 ORTHO05D002560 5.8e-08 62.8 332 25.3
AagrBONN_evm.TU.Sc2ySwM_344.2059 Anthoceros agrestis HOM05D002421 ORTHO05D002560 7.5e-08 62.4 301 22.6
Actinidia23306 Actinidia chinensis HOM05D002421 ORTHO05D002560 9.8e-08 62.0 327 24.5
Cfa015948 Carpinus fangiana HOM05D002421 ORTHO05D002560 1.7e-07 61.2 330 23.6
Haze_00541 Corylus avellana HOM05D002421 ORTHO05D002560 1.7e-07 61.2 330 23.6
TWI56G1379 Tripterygium wilfordii HOM05D002421 ORTHO05D002560 1.7e-07 61.2 341 24.6
TPR.G23095 Trifolium pratense HOM05D002421 ORTHO05D002560 2.2e-07 60.8 326 23.9
QL12p035461 Quercus lobata HOM05D002421 ORTHO05D002560 3.7e-07 60.1 328 24.1
CSS0019481 Camellia sinensis var. sinensis HOM05D002421 ORTHO05D002560 4.9e-07 59.7 332 24.1
SEGI_01544 Sequoiadendron giganteum HOM05D002421 ORTHO05D002560 4.9e-07 59.7 324 21.0
SEGI_40655 Sequoiadendron giganteum HOM05D002421 ORTHO05D002560 4.9e-07 59.7 324 21.0
vmacro12524 Vaccinium macrocarpon HOM05D002421 ORTHO05D002560 4.9e-07 59.7 328 23.2
BolC8t49770H Brassica oleracea HOM05D002421 ORTHO05D002560 6.4e-07 59.3 331 23.0
Dinv27395 Davidia involucrata HOM05D002421 ORTHO05D002560 6.4e-07 59.3 329 24.3
unitig_0.g912 Utricularia gibba HOM05D002421 ORTHO05D002560 6.4e-07 59.3 324 25.3
BcaC07g39139 Brassica carinata HOM05D002421 ORTHO05D002560 1.1e-06 58.5 331 23.0
C08p21290 Brassica napus HOM05D002421 ORTHO05D002560 1.1e-06 58.5 331 23.0
CSS0007134 Camellia sinensis var. sinensis HOM05D002421 ORTHO05D002560 1.1e-06 58.5 331 23.6
A08p28650 Brassica napus HOM05D002421 ORTHO05D002560 2.4e-06 57.4 331 23.3
BraA08t34795Z Brassica rapa HOM05D002421 ORTHO05D002560 2.4e-06 57.4 332 23.2
Mapoly0005s0250 Marchantia polymorpha HOM05D002421 ORTHO05D002560 2.4e-06 57.4 273 26.0
CiPaw.06G023800 Carya illinoinensis HOM05D002421 ORTHO05D002560 3.2e-06 57.0 332 23.2
SEGI_08203 Sequoiadendron giganteum HOM05D002440 ORTHO05D002576 4.1e-06 56.6 334 24.3
DCAR_014273 Daucus carota HOM05D002421 ORTHO05D002560 5.4e-06 56.2 103 35.9
Psat7g062880 Pisum sativum HOM05D002421 ORTHO05D002560 5.4e-06 56.2 301 23.3
CiPaw.05G230400 Carya illinoinensis HOM05D002421 ORTHO05D002560 7.0e-06 55.8 332 22.9
Aqoxy5G02457 Aquilegia oxysepala HOM05D002421 ORTHO05D002560 9.2e-06 55.5 333 23.4
Glyma.08G127100 Glycine max HOM05D002421 ORTHO05D002560 9.2e-06 55.5 329 24.6
Hma1.2p1_0251F.1_g102660 Hydrangea macrophylla HOM05D002421 ORTHO05D002560 9.2e-06 55.5 331 23.0
Nitab4.5_0000695g0170 Nicotiana tabacum HOM05D002421 ORTHO05D002560 9.2e-06 55.5 329 23.1
Oeu030022.1 Olea europaea HOM05D002421 ORTHO05D002560 9.2e-06 55.5 326 22.7
PGR044G1846 Punica granatum HOM05D002421 ORTHO05D002560 9.2e-06 55.5 329 23.4


User provided reference genes

Program Settings