Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018180 Carpinus fangiana HOM05D050872 ORTHO05D124654 1.5e-62 242.7 120 100.0
Cfa019824 Carpinus fangiana HOM05D050872 ORTHO05D010442 6.1e-24 114.4 66 84.8
Cfa005069 Carpinus fangiana HOM05D000069 ORTHO05D001405 2.3e-10 69.3 36 91.7
Haze_02314 Corylus avellana HOM05D000069 ORTHO05D001405 1.1e-09 67.0 36 88.9
CANSAT11G0607 Cannabis sativa HOM05D000069 ORTHO05D001405 4.7e-08 61.6 36 77.8
CiPaw.06G131500 Carya illinoinensis HOM05D000069 ORTHO05D001405 6.1e-08 61.2 36 77.8
PGR142G4109 Punica granatum HOM05D000069 ORTHO05D001405 1.4e-07 60.1 36 75.0
CiPaw.05G071100 Carya illinoinensis HOM05D000069 ORTHO05D001405 3.0e-07 58.9 36 75.0
Ca_20913_v3 Cicer arietinum L. HOM05D000069 ORTHO05D001405 4.0e-07 58.5 36 80.6
PGR042G0696 Punica granatum HOM05D000069 ORTHO05D001405 4.0e-07 58.5 36 72.2
FvH4_2g09940 Fragaria vesca HOM05D000069 ORTHO05D001405 5.2e-07 58.2 36 77.8
FAN15G2951 Fragaria x ananassa HOM05D000069 ORTHO05D001405 5.2e-07 58.2 36 77.8
FAN20G2151 Fragaria x ananassa HOM05D000069 ORTHO05D001405 5.2e-07 58.2 36 77.8
FAN24G2063 Fragaria x ananassa HOM05D000069 ORTHO05D001405 5.2e-07 58.2 36 77.8
RcHm_v2.0_Chr6g0266691 Rosa chinensis HOM05D000069 ORTHO05D001405 5.2e-07 58.2 36 77.8
ECA232G4579 Erigeron canadensis HOM05D000069 ORTHO05D001405 6.8e-07 57.8 36 69.4
Gohir.D07G025500 Gossypium hirsutum HOM05D000069 ORTHO05D001405 6.8e-07 57.8 36 72.2
Gorai.001G026600 Gossypium raimondii HOM05D000069 ORTHO05D001405 1.2e-06 57.0 36 72.2
Sc08g0000720 Simmondsia chinensis HOM05D000069 ORTHO05D001405 1.2e-06 57.0 36 69.4
Nitab4.5_0007812g0010 Nicotiana tabacum HOM05D000069 ORTHO05D001405 1.5e-06 56.6 36 66.7
Sabra02G0022800 Salix brachista HOM05D000069 ORTHO05D001405 1.5e-06 56.6 36 69.4
Actinidia11744 Actinidia chinensis HOM05D000069 ORTHO05D001405 2.0e-06 56.2 36 75.0
MD15G1019300 Malus domestica HOM05D000069 ORTHO05D001405 2.0e-06 56.2 36 69.4
SGA_v2.0_scaffold58G20489 Striga asiatica HOM05D000069 ORTHO05D001405 2.0e-06 56.2 36 72.2
vmacro17449 Vaccinium macrocarpon HOM05D000069 ORTHO05D001405 2.0e-06 56.2 36 69.4
FAN27G0291 Fragaria x ananassa HOM05D000069 ORTHO05D001405 2.6e-06 55.8 35 77.1
MD08G1021600 Malus domestica HOM05D000069 ORTHO05D001405 2.6e-06 55.8 36 66.7
Rhsim05G0070100 Rhododendron simsii HOM05D000069 ORTHO05D001405 2.6e-06 55.8 36 66.7
RcHm_v2.0_Chr6g0302031 Rosa chinensis HOM05D000069 ORTHO05D001405 2.6e-06 55.8 36 66.7
COL.COLO4_26006 Corchorus olitorius HOM05D000069 ORTHO05D001405 3.4e-06 55.5 36 72.2
MELO3C023338.2 Cucumis melo HOM05D000069 ORTHO05D001405 3.4e-06 55.5 37 75.7
Eucgr.I01305 Eucalyptus grandis HOM05D000069 ORTHO05D001405 3.4e-06 55.5 36 66.7
Gohir.A03G197700 Gossypium hirsutum HOM05D000069 ORTHO05D001405 3.4e-06 55.5 36 75.0
Gohir.D02G219000 Gossypium hirsutum HOM05D000069 ORTHO05D001405 3.4e-06 55.5 36 75.0
Gorai.005G247000 Gossypium raimondii HOM05D000069 ORTHO05D001405 3.4e-06 55.5 36 75.0
HanXRQChr08g0226921 Helianthus annuus HOM05D000069 ORTHO05D001405 3.4e-06 55.5 36 66.7
AT4G39090 Arabidopsis thaliana HOM05D000069 ORTHO05D001405 4.4e-06 55.1 35 71.4
Ciclev10028670m.g Citrus clementina HOM05D000069 ORTHO05D001405 4.4e-06 55.1 36 66.7
Peaxi162Scf00016g00338 Petunia axillaris HOM05D000069 ORTHO05D001405 4.4e-06 55.1 36 66.7
Prupe.8G088700 Prunus persica HOM05D000069 ORTHO05D001405 4.4e-06 55.1 36 77.8
Sc18g0005160 Simmondsia chinensis HOM05D000069 ORTHO05D001405 4.4e-06 55.1 36 66.7
Actinidia15379 Actinidia chinensis HOM05D000069 ORTHO05D001405 5.7e-06 54.7 36 63.9
Nitab4.5_0010575g0010 Nicotiana tabacum HOM05D000069 ORTHO05D001405 5.7e-06 54.7 36 66.7
Prupe.1G371600 Prunus persica HOM05D000069 ORTHO05D001405 5.7e-06 54.7 36 72.2
Rhsim06G0027100 Rhododendron simsii HOM05D000069 ORTHO05D001405 5.7e-06 54.7 36 66.7
Sed0019860 Sechium edule HOM05D000069 ORTHO05D001405 5.7e-06 54.7 37 73.0
Sed0026804 Sechium edule HOM05D000069 ORTHO05D001405 5.7e-06 54.7 37 73.0
ClCG02G004730 Citrullus lanatus HOM05D000069 ORTHO05D001405 7.5e-06 54.3 37 73.0
Cc00_g20290 Coffea canephora HOM05D000069 ORTHO05D001405 7.5e-06 54.3 36 63.9
CsaV3_2G015130 Cucumis sativus L. HOM05D000069 ORTHO05D001405 7.5e-06 54.3 37 73.0
Lalb_Chr19g0138851 Lupinus albus HOM05D000069 ORTHO05D001405 7.5e-06 54.3 36 75.0
Lalb_Chr24g0398811 Lupinus albus HOM05D000069 ORTHO05D001405 7.5e-06 54.3 36 66.7
TAR381G1452 Trochodendron aralioides HOM05D000069 ORTHO05D001405 7.5e-06 54.3 36 72.2
Actinidia15381 Actinidia chinensis HOM05D000069 ORTHO05D001405 9.8e-06 53.9 36 63.9
AL7G11020 Arabidopsis lyrata HOM05D000069 ORTHO05D001405 9.8e-06 53.9 35 68.6
MSTRG.16833 Avicennia marina HOM05D000069 ORTHO05D001405 9.8e-06 53.9 36 66.7
CSS0028522 Camellia sinensis var. sinensis HOM05D000069 ORTHO05D001405 9.8e-06 53.9 36 66.7
MELO3C013438.2 Cucumis melo HOM05D000069 ORTHO05D001405 9.8e-06 53.9 37 73.0
CsaV3_7G000190 Cucumis sativus L. HOM05D000069 ORTHO05D001405 9.8e-06 53.9 37 73.0
Lsat_1_v5_gn_5_25381 Lactuca sativa HOM05D000069 ORTHO05D001405 9.8e-06 53.9 36 63.9
Potri.002G028700 Populus trichocarpa HOM05D000069 ORTHO05D001405 9.8e-06 53.9 36 63.9
SHI05571 Sapria himalayana HOM05D000069 ORTHO05D001405 9.8e-06 53.9 36 72.2


User provided reference genes

Program Settings