Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018174 Carpinus fangiana HOM05D004108 ORTHO05D004849 1.8e-72 275.8 139 100.0
Haze_17929 Corylus avellana HOM05D004108 ORTHO05D004849 1.4e-51 206.5 121 88.4
QL02p009008 Quercus lobata HOM05D004108 ORTHO05D004849 6.0e-39 164.5 139 65.5
CiPaw.15G080700 Carya illinoinensis HOM05D004108 ORTHO05D004849 3.9e-38 161.8 138 60.9
TWI56G1092 Tripterygium wilfordii HOM05D004108 ORTHO05D004849 1.6e-36 156.4 142 57.0
Thecc.08G029500 Theobroma cacao HOM05D004108 ORTHO05D004849 4.7e-36 154.8 140 59.3
Duzib093G0346 Durio zibethinus HOM05D004108 ORTHO05D004849 4.0e-35 151.8 139 56.1
TPR.G20143 Trifolium pratense HOM05D004108 ORTHO05D004849 5.2e-35 151.4 138 55.1
Ciclev10002766m.g Citrus clementina HOM05D004108 ORTHO05D004849 8.9e-35 150.6 137 56.9
Sabra05G0176500 Salix brachista HOM05D004108 ORTHO05D004849 1.2e-34 150.2 133 58.6
Potri.005G228600 Populus trichocarpa HOM05D004108 ORTHO05D004849 2.6e-34 149.1 139 57.6
Psat6g008240 Pisum sativum HOM05D004108 ORTHO05D004849 7.5e-34 147.5 139 54.0
Glyma.17G251800 Glycine max HOM05D004108 ORTHO05D004849 1.7e-33 146.4 139 54.0
COL.COLO4_26289 Corchorus olitorius HOM05D004108 ORTHO05D004849 2.2e-33 146.0 142 55.6
Glyma.14G073200 Glycine max HOM05D004108 ORTHO05D004849 4.9e-33 144.8 137 53.3
Ca_13362_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 1.1e-32 143.7 138 52.9
Lalb_Chr08g0245901 Lupinus albus HOM05D004108 ORTHO05D004849 1.9e-32 142.9 138 53.6
Phvul.001G013200 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 1.9e-32 142.9 138 54.3
Cc10_g02670 Coffea canephora HOM05D004108 ORTHO05D004849 3.2e-32 142.1 140 56.4
Gorai.002G127100 Gossypium raimondii HOM05D004108 ORTHO05D004849 7.1e-32 141.0 138 52.9
Lj5g0010725 Lotus japonicus HOM05D004108 ORTHO05D004849 1.2e-31 140.2 135 54.1
Manes.18G023000 Manihot esculenta HOM05D004108 ORTHO05D004849 2.1e-31 139.4 140 52.1
Duzib116G0345 Durio zibethinus HOM05D004108 ORTHO05D004849 2.7e-31 139.0 140 53.6
Medtr1g022395 Medicago truncatula HOM05D004108 ORTHO05D004849 2.7e-31 139.0 139 53.2
Gohir.A01G114900 Gossypium hirsutum HOM05D004108 ORTHO05D004849 4.6e-31 138.3 138 51.4
VMungo0647G0771 Vigna mungo HOM05D004108 ORTHO05D004849 7.8e-31 137.5 141 51.1
Gohir.D01G103300 Gossypium hirsutum HOM05D004108 ORTHO05D004849 1.0e-30 137.1 138 51.4
GSVIVG01009730001 Vitis vinifera HOM05D004108 ORTHO05D004849 2.3e-30 136.0 140 55.0
Eucgr.F01582 Eucalyptus grandis HOM05D004108 ORTHO05D004849 3.0e-30 135.6 138 51.4
Gohir.D05G196000 Gossypium hirsutum HOM05D004108 ORTHO05D004849 5.1e-30 134.8 139 51.1
Gorai.009G200900 Gossypium raimondii HOM05D004108 ORTHO05D004849 5.1e-30 134.8 139 51.1
Gohir.A05G192800 Gossypium hirsutum HOM05D004108 ORTHO05D004849 1.9e-29 132.9 139 50.4
Glyma.06G031000 Glycine max HOM05D004108 ORTHO05D004849 2.5e-29 132.5 138 52.2
Aqoxy5G01593 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 3.3e-29 132.1 150 50.0
Rhsim06G0031200 Rhododendron simsii HOM05D004108 ORTHO05D004849 3.3e-29 132.1 141 51.8
Actinidia22531 Actinidia chinensis HOM05D004108 ORTHO05D004849 7.3e-29 131.0 142 53.5
MSTRG.22304 Avicennia marina HOM05D004108 ORTHO05D004849 1.2e-28 130.2 139 51.1
Sabra02G0027700 Salix brachista HOM05D004108 ORTHO05D004849 1.6e-28 129.8 138 50.0
Hma1.2p1_0203F.1_g086230 Hydrangea macrophylla HOM05D004108 ORTHO05D004849 2.1e-28 129.4 134 52.2
Glyma.04G030900 Glycine max HOM05D004108 ORTHO05D004849 2.8e-28 129.0 138 50.0
PGR083G0993 Punica granatum HOM05D004108 ORTHO05D004849 1.1e-27 127.1 139 51.1
Medtr3g111970 Medicago truncatula HOM05D004108 ORTHO05D004849 1.4e-27 126.7 140 49.3
CSS0043508 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 1.8e-27 126.3 143 49.0
MELO3C003817.2 Cucumis melo HOM05D004108 ORTHO05D004849 1.8e-27 126.3 138 47.1
Ca_15505_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 3.1e-27 125.6 138 47.8
CSS0044578 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 5.2e-27 124.8 143 49.0
Potri.002G034500 Populus trichocarpa HOM05D004108 ORTHO05D004849 5.2e-27 124.8 133 50.4
CsaV3_3G045320 Cucumis sativus L. HOM05D004108 ORTHO05D004849 1.2e-26 123.6 138 47.1
Gohir.A05G258800 Gossypium hirsutum HOM05D004108 ORTHO05D004849 3.4e-26 122.1 143 49.7
PGSC0003DMG400003688 Solanum tuberosum HOM05D004108 ORTHO05D004849 5.8e-26 121.3 138 47.1
TAR381G0780 Trochodendron aralioides HOM05D004108 ORTHO05D004849 5.8e-26 121.3 117 52.1
Gohir.D05G260600 Gossypium hirsutum HOM05D004108 ORTHO05D004849 9.9e-26 120.6 143 49.0
Nitab4.5_0002224g0100 Nicotiana tabacum HOM05D004108 ORTHO05D004849 1.3e-25 120.2 139 48.9
DCAR_019539 Daucus carota HOM05D001676 ORTHO05D001539 1.7e-25 119.8 146 48.6
Gorai.009G272400 Gossypium raimondii HOM05D004108 ORTHO05D004849 2.2e-25 119.4 143 49.0
ClCG08G014950 Citrullus lanatus HOM05D004108 ORTHO05D004849 3.7e-25 118.6 142 48.6
MELO3C010952.2 Cucumis melo HOM05D004108 ORTHO05D004849 4.9e-25 118.2 140 47.9
Phvul.009G058900 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 6.4e-25 117.9 147 48.3
Sopen04g034130 Solanum pennellii HOM05D004108 ORTHO05D004849 8.4e-25 117.5 138 47.1
MSTRG.24284 Avicennia marina HOM05D004108 ORTHO05D004849 1.1e-24 117.1 139 48.2
Solyc04g080540.2 Solanum lycopersicum HOM05D004108 ORTHO05D004849 1.9e-24 116.3 138 46.4
Sed0024175 Sechium edule HOM05D004108 ORTHO05D004849 2.4e-24 115.9 127 49.6
VMungo1309G0255 Vigna mungo HOM05D004108 ORTHO05D004849 2.4e-24 115.9 138 48.6
Glyma.06G031100 Glycine max HOM05D004108 ORTHO05D004849 3.2e-24 115.5 138 45.7
Lj1g0012803 Lotus japonicus HOM05D004108 ORTHO05D004849 5.4e-24 114.8 138 45.7
CsaV3_2G028830 Cucumis sativus L. HOM05D004108 ORTHO05D004849 9.2e-24 114.0 141 45.4
Psat5g012160 Pisum sativum HOM05D004108 ORTHO05D004849 1.2e-23 113.6 138 46.4
Prupe.1G377400 Prunus persica HOM05D004108 ORTHO05D004849 1.2e-23 113.6 136 47.1
Eucgr.F01583 Eucalyptus grandis HOM05D004108 ORTHO05D004849 2.7e-23 112.5 165 40.6
Atru.chr13.446 Acer truncatum HOM05D004108 ORTHO05D004849 3.5e-23 112.1 138 44.9
Migut.N00486 Erythranthe guttata HOM05D004108 ORTHO05D004849 7.8e-23 110.9 134 44.0
Oeu007023.1 Olea europaea HOM05D004108 ORTHO05D004849 1.0e-22 110.5 136 44.1
ATR0568G230 Amborella trichopoda HOM05D004108 ORTHO05D004849 1.7e-22 109.8 137 43.8
CANSAT25G1850 Cannabis sativa HOM05D004108 ORTHO05D004849 2.3e-22 109.4 150 46.7
Dinv36099 Davidia involucrata HOM05D004108 ORTHO05D004849 2.3e-22 109.4 121 51.2
Rhsim06G0031500 Rhododendron simsii HOM05D004108 ORTHO05D004849 2.3e-22 109.4 115 50.4
Rhsim07G0240700 Rhododendron simsii HOM05D004108 ORTHO05D004849 2.3e-22 109.4 134 48.5
RhsimUnG0051600 Rhododendron simsii HOM05D004108 ORTHO05D004849 2.3e-22 109.4 134 48.5
FAN15G0289 Fragaria x ananassa HOM05D004108 ORTHO05D004849 6.6e-22 107.8 155 44.5
Lalb_Chr14g0369381 Lupinus albus HOM05D004108 ORTHO05D004849 6.6e-22 107.8 139 46.8
AUR62003937 Chenopodium quinoa HOM05D004108 ORTHO05D004849 8.6e-22 107.5 138 44.9
AUR62014478 Chenopodium quinoa HOM05D004108 ORTHO05D004849 8.6e-22 107.5 138 44.9
FAN27G1128 Fragaria x ananassa HOM05D004108 ORTHO05D004849 1.9e-21 106.3 150 46.7
Sed0010517 Sechium edule HOM05D004108 ORTHO05D004849 3.3e-21 105.5 138 42.0
EL10Ac1g00610 Beta vulgaris HOM05D004108 ORTHO05D004849 9.6e-21 104.0 141 44.0
DCAR_020978 Daucus carota HOM05D004108 ORTHO05D004849 9.6e-21 104.0 117 51.3
RcHm_v2.0_Chr6g0301271 Rosa chinensis HOM05D004108 ORTHO05D004849 9.6e-21 104.0 141 46.1
PSO675G8146 Papaver somniferum HOM05D004108 ORTHO05D004849 1.2e-20 103.6 146 44.5
SGA_v2.0_scaffold326G48731 Striga asiatica HOM05D004108 ORTHO05D004849 1.6e-20 103.2 140 42.1
TPR.G12369 Trifolium pratense HOM05D004108 ORTHO05D004849 2.1e-20 102.8 146 41.1
Sc15g0007040 Simmondsia chinensis HOM05D004108 ORTHO05D004849 3.6e-20 102.1 141 44.0
FvH4_2g39630 Fragaria vesca HOM05D004108 ORTHO05D004849 4.7e-20 101.7 147 44.9
FAN20G2373 Fragaria x ananassa HOM05D004108 ORTHO05D004849 6.2e-20 101.3 157 42.7
CANSAT25G0460 Cannabis sativa HOM05D004108 ORTHO05D004849 1.1e-19 100.5 138 46.4
PSO541G2330 Papaver somniferum HOM05D004108 ORTHO05D004849 1.1e-19 100.5 140 44.3
HPP92_003110 Vanilla planifolia HOM05D004108 ORTHO05D004849 4.0e-19 98.6 139 41.7
CDE02G0765 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 6.8e-19 97.8 148 41.9
Lsat_1_v5_gn_5_27881 Lactuca sativa HOM05D004108 ORTHO05D004849 1.2e-18 97.1 138 43.5
Sp1g17400 Schrenkiella parvula HOM05D004108 ORTHO05D004849 1.2e-18 97.1 134 43.3
CDE06G1682 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 2.6e-18 95.9 142 40.8
Hund26890 Selenicereus undatus HOM05D004108 ORTHO05D004849 2.6e-18 95.9 141 39.7
Hund29908 Selenicereus undatus HOM05D004108 ORTHO05D004849 2.6e-18 95.9 141 39.7
Thhalv10009139m.g Eutrema salsugineum HOM05D004108 ORTHO05D004849 7.6e-18 94.4 137 46.7
Carub.0001s1910 Capsella rubella HOM05D004108 ORTHO05D004849 1.3e-17 93.6 134 45.5
MBI10_g18267_MAGBIO Magnolia biondii HOM05D004108 ORTHO05D004849 1.3e-17 93.6 127 42.5
Cpa.g.sc31.39 Carica papaya HOM05D004108 ORTHO05D004849 1.7e-17 93.2 120 45.0
CARHR020100 Cardamine hirsuta HOM05D004108 ORTHO05D004849 2.2e-17 92.8 134 40.3
THA.LOC104811375 Tarenaya hassleriana HOM05D004108 ORTHO05D004849 2.2e-17 92.8 137 43.1
MD08G1029700 Malus domestica HOM05D004108 ORTHO05D004849 3.8e-17 92.0 137 46.0
BcaB07g31980 Brassica carinata HOM05D004108 ORTHO05D004849 4.9e-17 91.7 134 41.8
BcaC05g25839 Brassica carinata HOM05D004108 ORTHO05D004849 6.4e-17 91.3 134 41.0
BolC5t30510H Brassica oleracea HOM05D004108 ORTHO05D004849 6.4e-17 91.3 134 41.0
ECA246G2053 Erigeron canadensis HOM05D004108 ORTHO05D004849 6.4e-17 91.3 142 40.1
A06p15710 Brassica napus HOM05D004108 ORTHO05D004849 8.4e-17 90.9 134 42.5
C05p18030 Brassica napus HOM05D004108 ORTHO05D004849 1.9e-16 89.7 134 40.3
Nn2g14293 Nelumbo nucifera HOM05D004108 ORTHO05D004849 1.9e-16 89.7 117 46.2
arahy.Tifrunner.gnm1.ann1.FG8SZ8 Arachis hypogaea HOM05D004108 ORTHO05D004849 2.4e-16 89.4 138 41.3
BraA06t24680Z Brassica rapa HOM05D004108 ORTHO05D004849 2.4e-16 89.4 134 41.8
Nitab4.5_0001759g0080 Nicotiana tabacum HOM05D004108 ORTHO05D004849 2.4e-16 89.4 106 48.1
AL1G32280 Arabidopsis lyrata HOM05D004108 ORTHO05D004849 5.4e-16 88.2 134 38.1
HanXRQChr05g0156841 Helianthus annuus HOM05D004108 ORTHO05D004849 7.1e-16 87.8 135 39.3
AagrBONN_evm.TU.Sc2ySwM_344.1816 Anthoceros agrestis HOM05D004108 ORTHO05D004849 1.2e-15 87.0 140 40.0
arahy.Tifrunner.gnm1.ann1.9Q97AW Arachis hypogaea HOM05D004108 ORTHO05D004849 2.1e-15 86.3 138 40.6
AT1G19530 Arabidopsis thaliana HOM05D004108 ORTHO05D004849 2.7e-15 85.9 134 38.8
SEGI_02312 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 2.7e-15 85.9 154 39.0
Hma1.2p1_0203F.1_g086240 Hydrangea macrophylla HOM05D004108 ORTHO05D004849 7.8e-15 84.3 103 47.6
Lsat_1_v5_gn_4_117601 Lactuca sativa HOM05D004108 ORTHO05D004849 7.8e-15 84.3 134 42.5
Actinidia38001 Actinidia chinensis HOM05D004108 ORTHO05D004849 2.3e-14 82.8 104 46.2
MBI18_g38882_MAGBIO Magnolia biondii HOM05D004108 ORTHO05D004849 2.3e-14 82.8 146 40.4
ClCG05G018840 Citrullus lanatus HOM05D004108 ORTHO05D004849 3.9e-14 82.0 103 45.6
unitig_899.g15617 Utricularia gibba HOM05D004108 ORTHO05D004849 5.1e-14 81.6 137 38.7
Mapoly0203s0009 Marchantia polymorpha HOM05D004108 ORTHO05D004849 6.6e-14 81.3 135 38.5
SEGI_30411 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 6.6e-14 81.3 143 38.5
ECA232G2533 Erigeron canadensis HOM05D004108 ORTHO05D004849 1.1e-13 80.5 133 39.8
Aqoxy3G01079 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 1.5e-13 80.1 139 36.0
Aa31LG7G4180 Aethionema arabicum HOM05D004108 ORTHO05D004849 1.9e-13 79.7 134 38.8
arahy.Tifrunner.gnm1.ann1.KZM1SZ Arachis hypogaea HOM05D004108 ORTHO05D004849 2.5e-13 79.3 104 47.1
arahy.Tifrunner.gnm1.ann1.RL39CN Arachis hypogaea HOM05D004108 ORTHO05D004849 2.5e-13 79.3 104 47.1
Os03g0826800 Oryza sativa ssp. japonica HOM05D004108 ORTHO05D004849 2.5e-13 79.3 142 38.7
Phvul.009G058800 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 3.3e-13 79.0 139 36.7
CDE05G3574 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 4.3e-13 78.6 139 38.1
Mapoly0085s0007 Marchantia polymorpha HOM05D004108 ORTHO05D004849 4.3e-13 78.6 131 38.9
Actinidia30825 Actinidia chinensis HOM05D004108 ORTHO05D004849 5.6e-13 78.2 88 50.0
HPP92_010562 Vanilla planifolia HOM05D004108 ORTHO05D004849 5.6e-13 78.2 140 40.0
Mapoly0087s0045 Marchantia polymorpha HOM05D004108 ORTHO05D004849 7.3e-13 77.8 137 39.4
SEGI_15325 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 9.6e-13 77.4 153 37.3
Sc02g0005700 Simmondsia chinensis HOM05D004108 ORTHO05D004849 1.6e-12 76.6 77 54.5
Mapoly0085s0006 Marchantia polymorpha HOM05D004108 ORTHO05D004849 4.8e-12 75.1 135 33.3
Mapoly0152s0035 Marchantia polymorpha HOM05D004108 ORTHO05D004849 4.8e-12 75.1 140 36.4
Mapoly0087s0044 Marchantia polymorpha HOM05D004108 ORTHO05D004849 6.2e-12 74.7 141 34.0
Glyma.18G124300 Glycine max HOM05D004108 ORTHO05D004849 1.1e-11 73.9 113 39.8
Mapoly0212s0008 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.1e-11 73.9 136 34.6
Peaxi162Scf00303g00058 Petunia axillaris HOM05D004108 ORTHO05D004849 1.1e-11 73.9 111 42.3
Aqoxy3G01077 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 1.4e-11 73.6 133 36.8
CDE11G1036 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 2.4e-11 72.8 135 37.0
Peaxi162Scf00020g01711 Petunia axillaris HOM05D004108 ORTHO05D004849 6.9e-11 71.2 99 44.4
Mapoly0212s0009 Marchantia polymorpha HOM05D004108 ORTHO05D004849 7.6e-10 67.8 137 33.6
Pp3c16_7660 Physcomitrium patens HOM05D004108 ORTHO05D004849 7.6e-10 67.8 135 34.1
HanXRQChr16g0501561 Helianthus annuus HOM05D004108 ORTHO05D004849 9.9e-10 67.4 133 36.1
Mapoly0212s0007 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.7e-09 66.6 132 31.1
Mapoly0037s0069 Marchantia polymorpha HOM05D004108 ORTHO05D004849 3.8e-09 65.5 139 30.9
AUR62014477 Chenopodium quinoa HOM05D004108 ORTHO05D004849 4.9e-09 65.1 64 48.4
CSS0033768 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 6.4e-09 64.7 48 60.4
Actinidia29817 Actinidia chinensis HOM05D004108 ORTHO05D004849 1.6e-07 60.1 40 62.5
SMO348G0043 Selaginella moellendorffii HOM05D004108 ORTHO05D004849 2.7e-07 59.3 160 30.6
Nitab4.5_0004768g0030 Nicotiana tabacum HOM05D004108 ORTHO05D004849 4.6e-07 58.5 107 39.3
Pp3c20_22930 Physcomitrium patens HOM05D004108 ORTHO05D004849 7.9e-07 57.8 116 32.8
PGSC0003DMG400005376 Solanum tuberosum HOM05D004108 ORTHO05D004849 3.0e-06 55.8 44 59.1
Sc26g0003380 Simmondsia chinensis HOM05D004108 ORTHO05D004849 6.6e-06 54.7 57 54.4


User provided reference genes

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