Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018140 Carpinus fangiana HOM05D005945 ORTHO05D006749 0.0e+00 1597.8 841 100.0
Haze_17984 Corylus avellana HOM05D005945 ORTHO05D006749 0.0e+00 1328.5 842 86.3
QL02p007988 Quercus lobata HOM05D005945 ORTHO05D006749 7.3e-257 891.0 946 57.2
CiPaw.15G076000 Carya illinoinensis HOM05D005945 ORTHO05D006749 6.9e-223 778.1 1112 47.3
Dinv39407 Davidia involucrata HOM05D005945 ORTHO05D006749 1.7e-133 481.1 884 39.1
Prupe.1G381200 Prunus persica HOM05D005945 ORTHO05D006749 1.2e-123 448.4 863 40.4
MD15G1030400 Malus domestica HOM05D005945 ORTHO05D006749 7.6e-113 412.5 758 40.5
Manes.18G028200 Manihot esculenta HOM05D005945 ORTHO05D006749 4.2e-111 406.8 802 37.0
Thecc.08G024700 Theobroma cacao HOM05D005945 ORTHO05D006749 4.6e-110 403.3 917 35.9
Duzib093G2051 Durio zibethinus HOM05D005945 ORTHO05D006749 7.9e-110 402.5 923 35.2
TAR376G0838 Trochodendron aralioides HOM05D005945 ORTHO05D006749 2.3e-109 401.0 872 36.7
Potri.014G181200 Populus trichocarpa HOM05D005945 ORTHO05D006749 3.0e-109 400.6 1025 33.8
Manes.05G161400 Manihot esculenta HOM05D005945 ORTHO05D006749 6.7e-109 399.4 834 37.9
RcHm_v2.0_Chr6g0300761 Rosa chinensis HOM05D005945 ORTHO05D006749 2.5e-108 397.5 869 37.1
CSS0001698 Camellia sinensis var. sinensis HOM05D005945 ORTHO05D006749 2.5e-103 380.9 891 35.2
CSS0038834 Camellia sinensis var. sinensis HOM05D005945 ORTHO05D006749 4.2e-103 380.2 891 35.1
COL.COLO4_26338 Corchorus olitorius HOM05D005945 ORTHO05D006749 3.0e-101 374.0 956 34.4
Actinidia15315 Actinidia chinensis HOM05D005945 ORTHO05D006749 1.3e-99 368.6 892 34.1
MD08G1033800 Malus domestica HOM05D005945 ORTHO05D006749 1.4e-98 365.2 966 34.0
FvH4_2g39990 Fragaria vesca HOM05D005945 ORTHO05D006749 1.7e-96 358.2 859 35.6
Sabra14G0141200 Salix brachista HOM05D005945 ORTHO05D006749 8.4e-96 355.9 1016 32.1
FAN20G0334 Fragaria x ananassa HOM05D005945 ORTHO05D006749 7.1e-95 352.8 858 35.2
Gorai.010G010800 Gossypium raimondii HOM05D005945 ORTHO05D006749 7.9e-94 349.4 897 34.1
FAN27G1966 Fragaria x ananassa HOM05D005945 ORTHO05D006749 1.0e-93 349.0 859 35.3
Gohir.D06G008100 Gossypium hirsutum HOM05D005945 ORTHO05D006749 6.7e-93 346.3 900 33.8
CANSAT25G3494 Cannabis sativa HOM05D005945 ORTHO05D006749 2.5e-92 344.4 944 32.0
FAN15G0837 Fragaria x ananassa HOM05D005945 ORTHO05D006749 3.3e-92 344.0 862 35.0
Cpa.g.sc64.76 Carica papaya HOM05D005945 ORTHO05D006749 4.2e-87 327.0 1032 31.3
Gohir.A06G010700 Gossypium hirsutum HOM05D005945 ORTHO05D006749 1.2e-86 325.5 889 32.7
TWI12G1232 Tripterygium wilfordii HOM05D005945 ORTHO05D006749 1.3e-83 315.5 839 31.7
Nn5g29549 Nelumbo nucifera HOM05D005945 ORTHO05D006749 1.3e-80 305.4 908 32.3
MELO3C010931.2 Cucumis melo HOM05D005945 ORTHO05D006749 5.0e-80 303.5 875 31.9
CsaV3_2G028570 Cucumis sativus L. HOM05D005945 ORTHO05D006749 1.1e-79 302.4 862 31.6
ClCG08G015230 Citrullus lanatus HOM05D005945 ORTHO05D006749 9.4e-79 299.3 805 31.9
arahy.Tifrunner.gnm1.ann1.Q0ZVI3 Arachis hypogaea HOM05D005945 ORTHO05D006749 2.6e-76 291.2 845 31.7
Nitab4.5_0000110g0520 Nicotiana tabacum HOM05D005945 ORTHO05D006749 1.5e-73 282.0 904 31.3
Rhsim06G0034700 Rhododendron simsii HOM05D005945 ORTHO05D006749 2.0e-73 281.6 853 30.9
Lj3g0003314 Lotus japonicus HOM05D005945 ORTHO05D006749 5.9e-73 280.0 847 30.1
Nitab4.5_0003783g0040 Nicotiana tabacum HOM05D005945 ORTHO05D006749 1.3e-72 278.9 893 30.3
Ca_03064_v3 Cicer arietinum L. HOM05D005945 ORTHO05D006749 9.4e-71 272.7 816 31.4
arahy.Tifrunner.gnm1.ann1.01TKSZ Arachis hypogaea HOM05D005945 ORTHO05D006749 1.8e-69 268.5 876 30.5
Cc10_g03040 Coffea canephora HOM05D005945 ORTHO05D006749 3.0e-69 267.7 831 30.0
PGSC0003DMG400005162 Solanum tuberosum HOM05D005945 ORTHO05D006749 3.0e-69 267.7 810 31.0
Psat7g242000 Pisum sativum HOM05D005945 ORTHO05D006749 2.4e-66 258.1 942 28.7
Sed0009733 Sechium edule HOM05D005945 ORTHO05D006749 5.3e-66 256.9 861 30.3
VMungo0331G0095 Vigna mungo HOM05D005945 ORTHO05D006749 5.9e-65 253.4 853 30.4
Eucgr.F01555 Eucalyptus grandis HOM05D005945 ORTHO05D006749 2.9e-64 251.1 876 29.9
THA.LOC104803244 Tarenaya hassleriana HOM05D005945 ORTHO05D006749 2.9e-64 251.1 817 31.3
Oeu036192.1 Olea europaea HOM05D005945 ORTHO05D006749 6.5e-64 250.0 900 30.7
Peaxi162Scf00690g00118 Petunia axillaris HOM05D005945 ORTHO05D006749 1.5e-63 248.8 896 28.1
Oeu056183.1 Olea europaea HOM05D005945 ORTHO05D006749 4.2e-63 247.3 865 29.4
TPR.G32532 Trifolium pratense HOM05D005945 ORTHO05D006749 1.2e-62 245.7 1055 27.2
Phvul.010G012000 Phaseolus vulgaris HOM05D005945 ORTHO05D006749 1.6e-62 245.4 849 29.9
MSTRG.25161 Avicennia marina HOM05D005945 ORTHO05D006749 1.2e-60 239.2 836 30.9
Lj2g0002553 Lotus japonicus HOM05D005945 ORTHO05D006749 1.5e-60 238.8 794 30.1
Lalb_Chr03g0042671 Lupinus albus HOM05D005945 ORTHO05D006749 3.7e-59 234.2 844 28.9
Hund26580 Selenicereus undatus HOM05D005945 ORTHO05D006749 3.7e-59 234.2 835 29.1
Glyma.03G071500 Glycine max HOM05D005945 ORTHO05D006749 1.4e-58 232.3 836 29.3
GSVIVG01009690001 Vitis vinifera HOM05D005945 ORTHO05D006749 7.0e-58 229.9 311 46.6
Migut.C00710 Erythranthe guttata HOM05D005945 ORTHO05D006749 1.0e-56 226.1 885 27.1
PGR031G1506 Punica granatum HOM05D005945 ORTHO05D006749 1.0e-56 226.1 796 30.8
Sc15g0006890 Simmondsia chinensis HOM05D005945 ORTHO05D006749 8.5e-56 223.0 885 27.6
Sopen04g033790 Solanum pennellii HOM05D005945 ORTHO05D006749 6.1e-54 216.9 750 30.7
Solyc04g080200.4 Solanum lycopersicum HOM05D005945 ORTHO05D006749 3.0e-53 214.5 739 30.3
Glyma.01G104600 Glycine max HOM05D005945 ORTHO05D006749 1.2e-52 212.6 978 26.5
Sed0010063 Sechium edule HOM05D005945 ORTHO05D006749 7.5e-52 209.9 858 28.7
ECA247G0868 Erigeron canadensis HOM05D005945 ORTHO05D006749 1.4e-50 205.7 950 27.6
TAR628G0886 Trochodendron aralioides HOM05D005945 ORTHO05D006749 3.1e-50 204.5 351 41.0
Medtr4g019490 Medicago truncatula HOM05D005945 ORTHO05D006749 1.0e-48 199.5 749 29.2
DCAR_008766 Daucus carota HOM05D005945 ORTHO05D006749 6.6e-48 196.8 836 27.0
MBI16_g17464_MAGBIO Magnolia biondii HOM05D005945 ORTHO05D006749 6.6e-48 196.8 914 28.8
AUR62038825 Chenopodium quinoa HOM05D005945 ORTHO05D006749 4.2e-47 194.1 850 27.1
Atru.chr13.504 Acer truncatum HOM05D005945 ORTHO05D006749 5.5e-47 193.7 444 36.5
HanXRQChr04g0105591 Helianthus annuus HOM05D005945 ORTHO05D006749 5.7e-44 183.7 830 26.5
Atru.chr13.502 Acer truncatum HOM05D005945 ORTHO05D006749 1.3e-43 182.6 258 45.7
EL10Ac1g01817 Beta vulgaris HOM05D005945 ORTHO05D006749 2.2e-43 181.8 858 27.0
SGA_v2.0_scaffold326G48709 Striga asiatica HOM05D005945 ORTHO05D006749 3.7e-43 181.0 849 27.4
Lsat_1_v5_gn_1_17620 Lactuca sativa HOM05D005945 ORTHO05D006749 1.1e-42 179.5 813 27.1
Actinidia22556 Actinidia chinensis HOM05D005945 ORTHO05D006749 1.8e-42 178.7 774 26.9
AUR62043686 Chenopodium quinoa HOM05D005945 ORTHO05D006749 9.2e-42 176.4 842 26.8
Gohir.D02G094500 Gossypium hirsutum HOM05D005945 ORTHO05D006749 1.3e-40 172.6 830 27.6
Dinv36067 Davidia involucrata HOM05D005945 ORTHO05D006749 3.9e-40 171.0 231 44.2
Ah.11g043130 Amaranthus hybridus HOM05D005945 ORTHO05D006749 6.6e-40 170.2 899 25.4
Thhalv10005811m.g Eutrema salsugineum HOM05D005945 ORTHO05D006749 1.5e-39 169.1 813 27.7
TAR628G0416 Trochodendron aralioides HOM05D005945 ORTHO05D006749 3.3e-39 167.9 228 45.6
PSO675G9049 Papaver somniferum HOM05D005945 ORTHO05D006749 2.1e-38 165.2 408 32.1
Gorai.005G107400 Gossypium raimondii HOM05D005945 ORTHO05D006749 3.6e-38 164.5 834 27.8
Lj4A42T73 Lonicera japonica HOM05D005945 ORTHO05D006749 4.7e-38 164.1 201 45.8
PSO541G4169 Papaver somniferum HOM05D005945 ORTHO05D006749 4.7e-38 164.1 487 29.0
AT3G56870 Arabidopsis thaliana HOM05D005945 ORTHO05D006749 1.0e-37 162.9 807 27.1
Sp5g05720 Schrenkiella parvula HOM05D005945 ORTHO05D006749 1.8e-37 162.2 862 24.9
vmacro21630 Vaccinium macrocarpon HOM05D005945 ORTHO05D006749 2.3e-37 161.8 696 28.7
AL5G38260 Arabidopsis lyrata HOM05D005945 ORTHO05D006749 1.7e-35 155.6 789 25.6
Aqoxy4G01586 Aquilegia oxysepala HOM05D005945 ORTHO05D006749 2.4e-34 151.8 950 24.7
A09p49740 Brassica napus HOM05D005945 ORTHO05D006749 9.2e-34 149.8 832 23.9
BraA09t40427Z Brassica rapa HOM05D005945 ORTHO05D006749 9.2e-34 149.8 832 23.9
Aqoxy4G01559 Aquilegia oxysepala HOM05D005945 ORTHO05D006749 2.0e-33 148.7 922 23.6
BcaC07g40112 Brassica carinata HOM05D005945 ORTHO05D006749 2.0e-33 148.7 833 24.4
Aa31LG10G11720 Aethionema arabicum HOM05D005945 ORTHO05D006749 6.0e-33 147.1 319 34.2
BolC8t50829H Brassica oleracea HOM05D005945 ORTHO05D006749 1.0e-32 146.4 839 23.6
Carub.0005s2360 Capsella rubella HOM05D005945 ORTHO05D006749 1.0e-32 146.4 821 25.8
HanXRQChr04g0105581 Helianthus annuus HOM05D005945 ORTHO05D006749 3.0e-32 144.8 524 30.9
BcaC07g39998 Brassica carinata HOM05D005945 ORTHO05D006749 6.6e-32 143.7 842 23.6
C08p32110 Brassica napus HOM05D005945 ORTHO05D006749 6.6e-32 143.7 842 23.6
CARHR167020 Cardamine hirsuta HOM05D005945 ORTHO05D006749 8.3e-27 126.7 424 30.9
Ah.05g167400 Amaranthus hybridus HOM05D005945 ORTHO05D006749 1.9e-26 125.6 850 24.0
vmacro21631 Vaccinium macrocarpon HOM05D005945 ORTHO05D006749 7.1e-26 123.6 131 48.9
Aqoxy6G01057 Aquilegia oxysepala HOM05D005945 ORTHO05D006749 9.2e-26 123.2 224 37.5
Lalb_Chr19g0125071 Lupinus albus HOM05D005945 ORTHO05D006749 1.6e-25 122.5 250 34.0
Sc18g0006320 Simmondsia chinensis HOM05D005945 ORTHO05D006749 3.1e-21 108.2 238 33.2
HPP92_021270 Vanilla planifolia HOM05D005945 ORTHO05D006749 2.0e-20 105.5 228 34.6
Zm00001eb021170 Zea mays HOM05D005945 ORTHO05D006749 5.8e-20 104.0 320 28.1
Zm00001eb404680 Zea mays HOM05D005945 ORTHO05D006749 2.4e-18 98.6 314 28.3
ATR0618G067 Amborella trichopoda HOM05D005945 ORTHO05D006749 4.1e-18 97.8 244 32.4
Os03g0594700 Oryza sativa ssp. japonica HOM05D005945 ORTHO05D006749 5.4e-18 97.4 275 28.4
Lalb_Chr19g0125061 Lupinus albus HOM05D005945 ORTHO05D006749 1.1e-15 89.7 569 26.4
SEGI_34412 Sequoiadendron giganteum HOM05D057448 ORTHO05D006749 1.2e-14 86.3 171 36.3
Gohir.A03G078400 Gossypium hirsutum HOM05D005945 ORTHO05D006749 2.6e-12 78.6 653 25.7
Potri.002G262601 Populus trichocarpa HOM05D005945 ORTHO05D006749 2.6e-12 78.6 113 43.4
Sabra02G0199400 Salix brachista HOM05D005945 ORTHO05D006749 9.9e-12 76.6 86 51.2
TAR381G0602 Trochodendron aralioides HOM05D005945 ORTHO05D006749 1.4e-10 72.8 134 38.1
Lj4P42T20 Lonicera japonica HOM05D005945 ORTHO05D006749 1.7e-08 65.9 407 27.5
AagrBONN_evm.TU.Sc2ySwM_344.3266 Anthoceros agrestis HOM05D005945 ORTHO05D006749 2.3e-08 65.5 135 32.6
MBI11_g07400_MAGBIO Magnolia biondii HOM05D007138 ORTHO05D009148 3.6e-06 58.2 134 27.6
SEGI_18222 Sequoiadendron giganteum HOM05D007138 ORTHO05D009148 6.2e-06 57.4 110 29.1


User provided reference genes

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