Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018138 Carpinus fangiana HOM05D002134 ORTHO05D008658 0.0e+00 1500.7 841 100.0
Haze_17986 Corylus avellana HOM05D002134 ORTHO05D008658 0.0e+00 1362.4 873 88.2
QL02p007944 Quercus lobata HOM05D002134 ORTHO05D008658 9.9e-246 854.0 864 61.6
CiPaw.15G075800 Carya illinoinensis HOM05D002134 ORTHO05D008658 1.3e-213 747.3 643 69.5
Dinv36064 Davidia involucrata HOM05D002134 ORTHO05D008658 7.0e-175 618.6 850 51.4
GSVIVG01009687001 Vitis vinifera HOM05D002134 ORTHO05D008658 7.0e-175 618.6 849 52.3
Atru.chr8.2604 Acer truncatum HOM05D002134 ORTHO05D008658 1.1e-164 584.7 859 48.8
Atru.chr13.512 Acer truncatum HOM05D002134 ORTHO05D008658 5.2e-162 575.9 860 48.4
Prupe.1G381400 Prunus persica HOM05D002134 ORTHO05D008658 9.8e-153 545.0 895 47.3
Actinidia38014 Actinidia chinensis HOM05D002134 ORTHO05D008658 1.7e-152 544.3 879 48.0
Ciclev10000375m.g Citrus clementina HOM05D002134 ORTHO05D008658 1.7e-152 544.3 687 53.1
Manes.05G161600 Manihot esculenta HOM05D002134 ORTHO05D008658 1.7e-152 544.3 846 46.0
MD08G1033500 Malus domestica HOM05D002134 ORTHO05D008658 2.9e-152 543.5 893 45.8
CANSAT25G1781 Cannabis sativa HOM05D002134 ORTHO05D008658 4.9e-152 542.7 843 47.6
TWI12G0094 Tripterygium wilfordii HOM05D002134 ORTHO05D008658 9.2e-151 538.5 845 46.4
vmacro04518 Vaccinium macrocarpon HOM05D002134 ORTHO05D008658 2.8e-147 526.9 929 45.2
TAR376G0546 Trochodendron aralioides HOM05D002134 ORTHO05D008658 4.7e-147 526.2 859 46.6
MD15G1030200 Malus domestica HOM05D002134 ORTHO05D008658 8.0e-147 525.4 872 45.9
CSS0008789 Camellia sinensis var. sinensis HOM05D002134 ORTHO05D008658 1.4e-146 524.6 865 46.2
Eucgr.F01907 Eucalyptus grandis HOM05D002134 ORTHO05D008658 8.9e-146 521.9 860 45.2
Thecc.08G024500 Theobroma cacao HOM05D002134 ORTHO05D008658 1.5e-145 521.2 843 46.5
Duzib116G0898 Durio zibethinus HOM05D002134 ORTHO05D008658 2.6e-145 520.4 844 46.6
Sabra02G0199600 Salix brachista HOM05D002134 ORTHO05D008658 9.8e-145 518.5 867 44.9
Gohir.D01G104800 Gossypium hirsutum HOM05D002134 ORTHO05D008658 4.3e-140 503.1 678 54.6
Gorai.002G128800 Gossypium raimondii HOM05D002134 ORTHO05D008658 1.8e-138 497.7 681 54.6
Lj1g0006718 Lotus japonicus HOM05D002134 ORTHO05D008658 5.2e-138 496.1 704 48.7
Gohir.A01G116400 Gossypium hirsutum HOM05D002134 ORTHO05D008658 6.8e-138 495.7 683 53.0
Potri.002G262800 Populus trichocarpa HOM05D002134 ORTHO05D008658 1.5e-137 494.6 598 54.3
Ca_15521_v3 Cicer arietinum L. HOM05D002134 ORTHO05D008658 2.6e-137 493.8 853 45.5
CsaV3_3G045010 Cucumis sativus L. HOM05D002134 ORTHO05D008658 4.4e-137 493.0 714 49.7
Rhsim07G0237200 Rhododendron simsii HOM05D002134 ORTHO05D008658 6.4e-136 489.2 960 42.8
FAN27G2069 Fragaria x ananassa HOM05D002134 ORTHO05D008658 2.7e-134 483.8 860 44.4
Medtr3g111740 Medicago truncatula HOM05D002134 ORTHO05D008658 6.0e-134 482.6 850 45.8
Sed0018102 Sechium edule HOM05D002134 ORTHO05D008658 1.7e-133 481.1 705 49.8
MELO3C003852.2 Cucumis melo HOM05D002134 ORTHO05D008658 2.3e-133 480.7 889 44.0
DCAR_008767 Daucus carota HOM05D002134 ORTHO05D008658 2.3e-133 480.7 738 46.1
Nn5g29542 Nelumbo nucifera HOM05D002134 ORTHO05D008658 5.1e-133 479.6 884 43.2
FvH4_2g39970 Fragaria vesca HOM05D002134 ORTHO05D008658 1.1e-132 478.4 840 45.0
RcHm_v2.0_Chr6g0300781 Rosa chinensis HOM05D002134 ORTHO05D008658 3.3e-132 476.9 841 44.9
ClCG05G019130 Citrullus lanatus HOM05D002134 ORTHO05D008658 2.1e-131 474.2 902 43.5
Lalb_Chr23g0266641 Lupinus albus HOM05D002134 ORTHO05D008658 4.7e-131 473.0 680 48.7
Duzib093G1270 Durio zibethinus HOM05D002134 ORTHO05D008658 2.6e-129 467.2 633 51.7
Glyma.06G033100 Glycine max HOM05D002134 ORTHO05D008658 3.0e-125 453.8 681 48.5
FAN20G2431 Fragaria x ananassa HOM05D002134 ORTHO05D003893 6.6e-125 452.6 861 43.9
TPR.G12392 Trifolium pratense HOM05D002134 ORTHO05D008658 1.5e-124 451.4 720 48.9
Phvul.009G057000 Phaseolus vulgaris HOM05D002134 ORTHO05D008658 4.3e-124 449.9 729 46.4
Glyma.04G033100 Glycine max HOM05D002134 ORTHO05D008658 4.9e-120 436.4 681 47.7
Lj4A785T29 Lonicera japonica HOM05D002134 ORTHO05D008658 7.1e-119 432.6 734 45.2
arahy.Tifrunner.gnm1.ann1.20CGAG Arachis hypogaea HOM05D002134 ORTHO05D008658 1.0e-117 428.7 849 42.0
Nitab4.5_0000523g0050 Nicotiana tabacum HOM05D002134 ORTHO05D008658 1.7e-117 427.9 863 40.9
Nitab4.5_0006995g0020 Nicotiana tabacum HOM05D002134 ORTHO05D008658 3.0e-117 427.2 862 41.0
FAN15G0789 Fragaria x ananassa HOM05D002134 ORTHO05D003893 1.5e-116 424.9 844 42.9
PGR031G3893 Punica granatum HOM05D002134 ORTHO05D008658 4.8e-115 419.9 866 42.5
Psat0s2660g0080 Pisum sativum HOM05D002134 ORTHO05D008658 8.1e-115 419.1 673 48.3
SGA_v2.0_scaffold48G18075 Striga asiatica HOM05D002134 ORTHO05D008658 1.2e-113 415.2 882 39.6
Peaxi162Scf00925g00033 Petunia axillaris HOM05D002134 ORTHO05D008658 1.5e-113 414.8 719 43.5
Cc10_g03060 Coffea canephora HOM05D002134 ORTHO05D008658 2.0e-113 414.5 868 40.0
ECA247G2410 Erigeron canadensis HOM05D002134 ORTHO05D008658 1.9e-111 407.9 862 41.9
SalBow7G3154 Salvia bowleyana HOM05D002134 ORTHO05D008658 7.9e-110 402.5 606 46.9
Aqoxy6G01051 Aquilegia oxysepala HOM05D002134 ORTHO05D008658 9.6e-108 395.6 866 38.9
MBI16_g17456_MAGBIO Magnolia biondii HOM05D002134 ORTHO05D008658 2.1e-107 394.4 867 39.9
Lalb_Chr08g0245851 Lupinus albus HOM05D002134 ORTHO05D008658 2.4e-106 391.0 675 44.7
VMungo1309G2241 Vigna mungo HOM05D006576 ORTHO05D008644 2.0e-105 387.9 842 41.4
Migut.C00708 Erythranthe guttata HOM05D002134 ORTHO05D008658 2.9e-104 384.0 859 38.9
CAN.G52.14 Capsicum annuum HOM05D002134 ORTHO05D008658 3.2e-103 380.6 829 39.7
arahy.Tifrunner.gnm1.ann1.6UHH7V Arachis hypogaea HOM05D002134 ORTHO05D008658 1.0e-101 375.6 871 39.2
Sopen07g013310 Solanum pennellii HOM05D002134 ORTHO05D008658 1.3e-101 375.2 677 42.5
Sed0020001 Sechium edule HOM05D002134 ORTHO05D008658 3.7e-99 367.1 755 40.8
Solyc07g025380.3 Solanum lycopersicum HOM05D002134 ORTHO05D008658 1.8e-98 364.8 677 41.9
HanXRQChr04g0105601 Helianthus annuus HOM05D002134 ORTHO05D008658 2.4e-98 364.4 882 40.0
PGSC0003DMG400007581 Solanum tuberosum HOM05D002134 ORTHO05D008658 1.0e-96 359.0 863 37.0
PSO541G2605 Papaver somniferum HOM05D002134 ORTHO05D008658 2.5e-95 354.4 890 38.8
Hma1.2p1_0203F.1_g086500 Hydrangea macrophylla HOM05D002134 ORTHO05D008658 1.2e-94 352.1 287 70.7
PSO675G8956 Papaver somniferum HOM05D002134 ORTHO05D008658 2.1e-94 351.3 879 37.9
THA.LOC104813840 Tarenaya hassleriana HOM05D002134 ORTHO05D008658 1.3e-93 348.6 614 44.5
Lsat_1_v5_gn_1_17581 Lactuca sativa HOM05D002134 ORTHO05D008658 3.9e-93 347.1 901 37.2
Hund27548 Selenicereus undatus HOM05D002134 ORTHO05D008658 1.0e-85 322.4 565 43.9
Hund27550 Selenicereus undatus HOM05D002134 ORTHO05D008658 1.0e-85 322.4 565 43.9
ATR0733G232 Amborella trichopoda HOM05D002134 ORTHO05D008658 3.1e-82 310.8 589 42.1
Carub.0002s2196 Capsella rubella HOM05D002134 ORTHO05D008658 1.0e-77 295.8 861 36.7
AL2G35050 Arabidopsis lyrata HOM05D002134 ORTHO05D008658 6.7e-77 293.1 865 35.4
MBI16_g45959_MAGBIO Magnolia biondii HOM05D002134 ORTHO05D008658 7.0e-74 283.1 801 37.3
EL10Ac1g01833 Beta vulgaris HOM05D002134 ORTHO05D008658 2.6e-73 281.2 687 37.7
A07p40750 Brassica napus HOM05D002134 ORTHO05D008658 7.7e-73 279.6 636 39.0
AT1G75150 Arabidopsis thaliana HOM05D002134 ORTHO05D008658 2.7e-70 271.2 874 35.1
Thhalv10019843m.g Eutrema salsugineum HOM05D002134 ORTHO05D008658 1.4e-69 268.9 795 35.6
Aa31LG4G5340 Aethionema arabicum HOM05D002134 ORTHO05D008658 1.1e-68 265.8 909 32.7
COL.COLO4_26340 Corchorus olitorius HOM05D005308 ORTHO05D006494 1.5e-68 265.4 439 42.6
C06p49130 Brassica napus HOM05D002134 ORTHO05D008658 7.4e-68 263.1 644 37.7
BolC6t39947H Brassica oleracea HOM05D002134 ORTHO05D008658 7.4e-68 263.1 644 37.7
BraA07t31617Z Brassica rapa HOM05D002134 ORTHO05D008658 9.7e-68 262.7 889 33.5
BcaC08g46941 Brassica carinata HOM05D000061 ORTHO05D008658 4.8e-67 260.4 676 36.8
CARHR068480 Cardamine hirsuta HOM05D002134 ORTHO05D008658 3.1e-66 257.7 883 34.9
Zm00001eb061990 Zea mays HOM05D002134 ORTHO05D008658 2.6e-65 254.6 641 38.2
BcaC08g46976 Brassica carinata HOM05D002134 ORTHO05D008658 2.2e-64 251.5 643 38.3
Sc02g0006290 Simmondsia chinensis HOM05D002134 ORTHO05D008658 6.5e-64 250.0 568 39.4
Sp5g30280 Schrenkiella parvula HOM05D002134 ORTHO05D008658 3.2e-63 247.7 873 33.8
CDE02G0502 Ceratophyllum demersum HOM05D002134 ORTHO05D008658 7.2e-63 246.5 630 37.1
unitig_37.g12967 Utricularia gibba HOM05D002134 ORTHO05D008658 6.1e-62 243.4 586 37.9
AUR62034948 Chenopodium quinoa HOM05D002134 ORTHO05D008658 3.0e-53 214.5 679 33.0
SEGI_00628 Sequoiadendron giganteum HOM05D002134 ORTHO05D008658 6.8e-53 213.4 658 33.6
Ah.11g043170 Amaranthus hybridus HOM05D002134 ORTHO05D008658 8.8e-53 213.0 729 32.6
Cpa.g.sc64.74 Carica papaya HOM05D002134 ORTHO05D008658 4.8e-51 207.2 596 36.1
AUR62035457 Chenopodium quinoa HOM05D002134 ORTHO05D008658 4.1e-50 204.1 679 32.3
SHI17315 Sapria himalayana HOM05D002134 ORTHO05D008658 4.7e-46 190.7 612 31.7
Cpa.g.sc64.73 Carica papaya HOM05D002134 ORTHO05D008658 1.2e-33 149.4 203 47.8
Oeu036193.1 Olea europaea HOM05D002134 ORTHO05D008658 5.0e-32 144.1 287 38.7
Mapoly0032s0034 Marchantia polymorpha HOM05D002134 ORTHO05D008658 1.9e-31 142.1 646 29.1
HPP92_018472 Vanilla planifolia HOM05D002134 ORTHO05D008658 1.6e-30 139.0 397 36.3
Pp3c7_550 Physcomitrium patens HOM05D002134 ORTHO05D008658 2.8e-22 111.7 639 27.7
Pp3c7_551 Physcomitrium patens HOM05D002134 ORTHO05D008658 2.8e-22 111.7 639 27.7
SMO144G0024 Selaginella moellendorffii HOM05D002134 ORTHO05D008658 1.4e-21 109.4 810 26.2
HPP92_018471 Vanilla planifolia HOM05D002134 ORTHO05D008658 2.4e-18 98.6 182 44.5
Actinidia29830 Actinidia chinensis HOM05D002134 ORTHO05D008658 1.0e-16 93.2 150 44.7
DCAR_011210 Daucus carota HOM05D001893 ORTHO05D008658 6.6e-08 63.9 191 35.6


User provided reference genes

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