Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018137 Carpinus fangiana HOM05D005308 ORTHO05D006494 0.0e+00 1274.6 672 100.0
Haze_17987 Corylus avellana HOM05D005308 ORTHO05D006494 0.0e+00 1214.5 672 94.2
CiPaw.15G075700 Carya illinoinensis HOM05D005308 ORTHO05D006494 4.0e-274 948.0 676 75.0
QL02p007937 Quercus lobata HOM05D005308 ORTHO05D006494 4.0e-258 894.8 673 73.4
Manes.05G161700 Manihot esculenta HOM05D005308 ORTHO05D006494 1.8e-245 852.8 671 66.2
RcHm_v2.0_Chr6g0300791 Rosa chinensis HOM05D005308 ORTHO05D006494 2.4e-242 842.4 610 71.3
Ciclev10000534m.g Citrus clementina HOM05D005308 ORTHO05D006494 7.6e-241 837.4 683 65.0
Sabra02G0199700 Salix brachista HOM05D005308 ORTHO05D006494 2.5e-239 832.4 672 65.9
Potri.002G262900 Populus trichocarpa HOM05D005308 ORTHO05D006494 5.5e-239 831.2 672 65.6
Potri.014G180900 Populus trichocarpa HOM05D005308 ORTHO05D006494 1.3e-237 826.6 673 65.7
Prupe.1G381500 Prunus persica HOM05D005308 ORTHO05D006494 1.3e-237 826.6 685 65.4
Dinv39406 Davidia involucrata HOM05D005308 ORTHO05D006494 3.9e-237 825.1 611 69.9
FAN27G1201 Fragaria x ananassa HOM05D005308 ORTHO05D006494 8.7e-237 823.9 602 71.4
Glyma.14G076200 Glycine max HOM05D005308 ORTHO05D006494 8.7e-237 823.9 673 64.0
Duzib041G0136 Durio zibethinus HOM05D005308 ORTHO05D006494 1.3e-235 820.1 675 65.3
Atru.chr13.513 Acer truncatum HOM05D005308 ORTHO05D006494 2.2e-235 819.3 677 65.1
Atru.chr8.2603 Acer truncatum HOM05D005308 ORTHO05D006494 4.8e-235 818.1 677 65.3
Thecc.08G024400 Theobroma cacao HOM05D005308 ORTHO05D006494 4.8e-235 818.1 675 64.6
FAN15G3722 Fragaria x ananassa HOM05D005308 ORTHO05D006494 1.4e-234 816.6 601 71.5
FvH4_2g39960 Fragaria vesca HOM05D005308 ORTHO05D006494 6.9e-234 814.3 601 70.7
GSVIVG01009686001 Vitis vinifera HOM05D005308 ORTHO05D006494 6.9e-234 814.3 671 64.8
Lj5g0021582 Lotus japonicus HOM05D005308 ORTHO05D006494 1.1e-231 807.0 607 67.5
Duzib093G0415 Durio zibethinus HOM05D005308 ORTHO05D006494 1.0e-229 800.4 602 69.6
PGR031G2270 Punica granatum HOM05D005308 ORTHO05D006494 2.0e-228 796.2 678 63.0
ClCG08G015210 Citrullus lanatus HOM05D005308 ORTHO05D006494 4.3e-228 795.0 678 63.7
ClCG08G015240 Citrullus lanatus HOM05D005308 ORTHO05D006494 4.3e-228 795.0 678 63.7
Duzib116G0819 Durio zibethinus HOM05D005308 ORTHO05D006494 4.3e-228 795.0 674 63.6
MELO3C010930.2 Cucumis melo HOM05D005308 ORTHO05D006494 5.7e-228 794.7 682 63.5
Hma1.2p1_0077F.1_g039700 Hydrangea macrophylla HOM05D005308 ORTHO05D006494 5.7e-228 794.7 685 63.2
Gorai.009G203600 Gossypium raimondii HOM05D005308 ORTHO05D006494 7.4e-228 794.3 715 61.4
Ca_13346_v3 Cicer arietinum L. HOM05D005308 ORTHO05D006494 6.3e-227 791.2 673 62.3
MD15G1030000 Malus domestica HOM05D005308 ORTHO05D006494 1.4e-226 790.0 606 68.2
Gohir.D05G198500 Gossypium hirsutum HOM05D005308 ORTHO05D006494 2.6e-225 785.8 715 60.8
Medtr1g022045 Medicago truncatula HOM05D005308 ORTHO05D006494 5.9e-225 784.6 677 61.7
Glyma.17G249600 Glycine max HOM05D005308 ORTHO05D006494 7.7e-225 784.3 617 66.1
Gohir.A05G195300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 7.7e-225 784.3 680 63.2
MD08G1033400 Malus domestica HOM05D005308 ORTHO05D006494 1.0e-224 783.9 618 66.7
CsaV3_2G028560 Cucumis sativus L. HOM05D005308 ORTHO05D006494 2.2e-224 782.7 682 62.9
Psat6g007480 Pisum sativum HOM05D005308 ORTHO05D006494 8.5e-224 780.8 673 61.1
Sed0011840 Sechium edule HOM05D005308 ORTHO05D006494 4.2e-223 778.5 614 66.4
Eucgr.F01908 Eucalyptus grandis HOM05D005308 ORTHO05D006494 1.2e-222 776.9 622 65.0
Phvul.001G015400 Phaseolus vulgaris HOM05D005308 ORTHO05D006494 1.8e-221 773.1 672 61.5
vmacro04517 Vaccinium macrocarpon HOM05D005308 ORTHO05D006494 1.8e-221 773.1 610 66.2
VMungo0647G0443 Vigna mungo HOM05D005308 ORTHO05D006494 1.8e-221 773.1 617 65.0
Lalb_Chr22g0355491 Lupinus albus HOM05D005308 ORTHO05D006494 3.0e-221 772.3 587 68.1
Gohir.D06G008300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 1.3e-219 766.9 599 67.9
TPR.G29756 Trifolium pratense HOM05D005308 ORTHO05D006494 2.2e-219 766.1 682 60.9
Gorai.010G011100 Gossypium raimondii HOM05D005308 ORTHO05D006494 3.7e-219 765.4 599 67.8
Gohir.A06G010900 Gossypium hirsutum HOM05D005308 ORTHO05D006494 6.3e-219 764.6 599 67.4
COL.COLO4_26340 Corchorus olitorius HOM05D005308 ORTHO05D006494 5.9e-217 758.1 596 67.3
Sed0021548 Sechium edule HOM05D005308 ORTHO05D006494 1.0e-216 757.3 614 65.1
Rhsim07G0237100 Rhododendron simsii HOM05D005308 ORTHO05D006494 2.1e-214 749.6 687 60.3
Lj4P784T41 Lonicera japonica HOM05D005308 ORTHO05D006494 6.1e-214 748.0 602 64.6
EL10Ac9g23018 Beta vulgaris HOM05D005308 ORTHO05D006494 4.4e-212 741.9 594 64.3
Nitab4.5_0003783g0070 Nicotiana tabacum HOM05D005308 ORTHO05D006494 9.7e-212 740.7 683 57.0
Sc02g0006300 Simmondsia chinensis HOM05D005308 ORTHO05D006494 2.2e-211 739.6 611 63.5
Nitab4.5_0000110g0380 Nicotiana tabacum HOM05D005308 ORTHO05D006494 1.1e-210 737.3 685 57.1
CsaV3_2G028600 Cucumis sativus L. HOM05D005308 ORTHO05D006494 1.4e-210 736.9 672 60.6
Cc03_g06460 Coffea canephora HOM05D005308 ORTHO05D006494 7.0e-210 734.6 677 57.5
TWI73G1022 Tripterygium wilfordii HOM05D005308 ORTHO05D006494 5.0e-208 728.4 627 62.4
AUR62032897 Chenopodium quinoa HOM05D005308 ORTHO05D006494 1.1e-207 727.2 596 63.3
Ah.01g011450 Amaranthus hybridus HOM05D005308 ORTHO05D006494 1.5e-207 726.9 608 62.7
PGSC0003DMG400005144 Solanum tuberosum HOM05D005308 ORTHO05D006494 7.2e-207 724.5 601 61.7
Solyc04g080180.1 Solanum lycopersicum HOM05D005308 ORTHO05D006494 2.8e-203 712.6 601 61.6
Aqoxy3G02057 Aquilegia oxysepala HOM05D005308 ORTHO05D006494 8.3e-203 711.1 623 60.4
CAN.G1126.42 Capsicum annuum HOM05D005308 ORTHO05D006494 3.1e-202 709.1 679 57.0
Sopen04g033770 Solanum pennellii HOM05D005308 ORTHO05D006494 5.4e-202 708.4 601 61.6
TAR376G0813 Trochodendron aralioides HOM05D005308 ORTHO05D006494 2.0e-201 706.4 609 61.7
THA.LOC104813841 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 1.1e-199 700.7 692 56.6
SalBow5G1122 Salvia bowleyana HOM05D005308 ORTHO05D006494 3.4e-196 689.1 527 64.1
CSS0027115 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 7.5e-196 688.0 593 63.2
Peaxi162Scf00690g00113 Petunia axillaris HOM05D005308 ORTHO05D006494 1.7e-195 686.8 614 58.0
Oeu052497.1 Olea europaea HOM05D005308 ORTHO05D006494 6.3e-195 684.9 562 62.6
Oeu016389.1 Olea europaea HOM05D005308 ORTHO05D006494 4.1e-194 682.2 552 62.5
Nn3g19273 Nelumbo nucifera HOM05D005308 ORTHO05D006494 9.2e-194 681.0 540 65.0
MSTRG.11457 Avicennia marina HOM05D005308 ORTHO05D006494 2.7e-193 679.5 617 58.7
Thhalv10018268m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 2.7e-193 679.5 688 55.4
Sp5g30270 Schrenkiella parvula HOM05D005308 ORTHO05D006494 1.7e-192 676.8 670 55.4
PSO782G4716 Papaver somniferum HOM05D005308 ORTHO05D006494 3.3e-191 672.5 676 54.9
PSO063G3485 Papaver somniferum HOM05D005308 ORTHO05D006494 9.5e-191 671.0 676 54.7
AUR62017754 Chenopodium quinoa HOM05D005308 ORTHO05D006494 6.1e-190 668.3 495 67.5
MSTRG.23132 Avicennia marina HOM05D005308 ORTHO05D006494 8.0e-190 667.9 686 53.1
THA.LOC104806374 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 1.0e-189 667.5 622 57.4
Carub.0002s2195 Capsella rubella HOM05D005308 ORTHO05D006494 6.8e-189 664.8 683 54.5
CARHR068470 Cardamine hirsuta HOM05D005308 ORTHO05D006494 4.1e-186 655.6 610 59.0
AT1G75140 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 3.5e-185 652.5 612 58.5
DCAR_020966 Daucus carota HOM05D005308 ORTHO05D006494 1.5e-183 647.1 565 60.5
Aa31LG7G4080 Aethionema arabicum HOM05D005308 ORTHO05D006494 5.6e-183 645.2 604 55.8
DCAR_019524 Daucus carota HOM05D005308 ORTHO05D006494 6.2e-182 641.7 603 56.9
AL2G35040 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 8.0e-182 641.3 685 53.7
Sp1g17280 Schrenkiella parvula HOM05D005308 ORTHO05D006494 4.0e-181 639.0 608 56.9
Carub.0001s1896 Capsella rubella HOM05D005308 ORTHO05D006494 5.2e-181 638.6 606 56.8
AT1G19370 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 7.5e-180 634.8 609 55.8
AL1G31960 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 9.8e-180 634.4 616 55.5
BraA06t24665Z Brassica rapa HOM05D005308 ORTHO05D006494 9.8e-180 634.4 618 55.8
A06p15530 Brassica napus HOM05D005308 ORTHO05D006494 1.3e-179 634.0 618 55.8
Migut.I00006 Erythranthe guttata HOM05D005308 ORTHO05D006494 1.6e-177 627.1 621 54.6
CARHR019960 Cardamine hirsuta HOM05D005308 ORTHO05D006494 6.0e-177 625.2 583 56.3
HanXRQChr05g0151851 Helianthus annuus HOM05D005308 ORTHO05D006494 1.3e-176 624.0 624 54.8
CSS0028044 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 3.9e-176 622.5 446 71.3
BolC5t30482H Brassica oleracea HOM05D005308 ORTHO05D006494 1.9e-175 620.2 534 59.9
BcaB02g06995 Brassica carinata HOM05D005308 ORTHO05D006494 2.8e-174 616.3 599 56.8
C06p32820 Brassica napus HOM05D005308 ORTHO05D006494 3.6e-174 615.9 599 56.8
BolC6t38403H Brassica oleracea HOM05D005308 ORTHO05D006494 3.6e-174 615.9 601 56.4
A07p29040 Brassica napus HOM05D005308 ORTHO05D006494 1.4e-173 614.0 674 52.2
BcaB07g31957 Brassica carinata HOM05D005308 ORTHO05D006494 8.9e-173 611.3 618 54.5
BraA07t30544Z Brassica rapa HOM05D005308 ORTHO05D006494 1.2e-172 610.9 674 52.1
MBI04_g27271_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 9.8e-172 607.8 614 54.1
ECA246G5303 Erigeron canadensis HOM05D005308 ORTHO05D006494 2.7e-169 599.7 559 58.5
Aa31LG4G5330 Aethionema arabicum HOM05D005308 ORTHO05D006494 6.6e-168 595.1 581 55.2
BcaB02g07009 Brassica carinata HOM05D005308 ORTHO05D006494 6.6e-168 595.1 620 55.2
Thhalv10009294m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 1.1e-167 594.3 608 54.1
Lsat_1_v5_gn_5_29021 Lactuca sativa HOM05D005308 ORTHO05D006494 2.5e-167 593.2 534 57.5
CDE11G0691 Ceratophyllum demersum HOM05D005308 ORTHO05D006494 9.5e-167 591.3 600 52.3
SGA_v2.0_scaffold90G27910 Striga asiatica HOM05D005308 ORTHO05D006494 2.5e-151 540.0 710 47.0
SEGI_39092 Sequoiadendron giganteum HOM05D005308 ORTHO05D006494 1.3e-150 537.7 633 47.2
SHI08167 Sapria himalayana HOM05D005308 ORTHO05D006494 4.0e-149 532.7 505 56.2
ATR0829G103 Amborella trichopoda HOM05D005308 ORTHO05D006494 7.6e-148 528.5 608 48.5
MBI04_g21134_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 8.7e-144 515.0 611 48.9
Os06g0115200 Oryza sativa ssp. japonica HOM05D005308 ORTHO05D006494 2.2e-131 473.8 646 43.0
Zm00001eb269050 Zea mays HOM05D005308 ORTHO05D006494 3.0e-128 463.4 643 42.9
Actinidia38015 Actinidia chinensis HOM05D005308 ORTHO05D006494 4.1e-125 453.0 617 47.2
Pp3c20_21760 Physcomitrium patens HOM05D005308 ORTHO05D006494 3.7e-102 376.7 542 41.9
C05p17770 Brassica napus HOM05D005308 ORTHO05D006494 1.8e-101 374.4 262 69.1
Mapoly0094s0054 Marchantia polymorpha HOM05D005308 ORTHO05D006494 2.4e-101 374.0 592 38.2
Pp3c10_23930 Physcomitrium patens HOM05D005308 ORTHO05D006494 2.0e-100 370.9 541 41.0
AagrBONN_evm.TU.Sc2ySwM_228.2792 Anthoceros agrestis HOM05D005308 ORTHO05D006494 2.2e-94 350.9 529 39.3
BcaNung07297 Brassica carinata HOM05D005308 ORTHO05D006494 1.8e-93 347.8 236 69.9
BcaNung07223 Brassica carinata HOM05D005308 ORTHO05D006494 4.5e-92 343.2 323 56.3
SMO361G0791 Selaginella moellendorffii HOM05D005308 ORTHO05D006494 4.2e-90 336.7 412 45.4
BcaB02g07002 Brassica carinata HOM05D005308 ORTHO05D006494 1.6e-81 308.1 222 69.8
unitig_0.g1436 Utricularia gibba HOM05D005308 ORTHO05D006494 3.5e-76 290.4 334 49.4
unitig_0.g1437 Utricularia gibba HOM05D005308 ORTHO05D006494 4.1e-53 213.8 252 48.8
A07p29060 Brassica napus HOM05D005308 ORTHO05D006494 2.8e-49 201.1 125 74.4
MCO12G330 Micromonas commoda HOM05D005308 ORTHO05D006494 1.3e-17 95.9 539 21.7
SHI17314 Sapria himalayana HOM05D005308 ORTHO05D006494 2.4e-08 65.1 138 35.5
BcaC07g37382 Brassica carinata HOM05D005308 ORTHO05D006494 6.9e-08 63.5 64 50.0
CBR_g49554 Chara braunii HOM05D005308 ORTHO05D006494 7.7e-07 60.1 101 35.6


User provided reference genes

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