Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018117 Carpinus fangiana HOM05D004294 ORTHO05D004899 1.0e-57 226.5 110 100.0
Cfa019943 Carpinus fangiana HOM05D004294 ORTHO05D004899 4.0e-22 108.2 63 85.7
Cfa022163 Carpinus fangiana HOM05D004294 ORTHO05D004899 9.2e-19 97.1 53 92.5
Haze_02916 Corylus avellana HOM05D004294 ORTHO05D004899 1.0e-17 93.6 53 88.7
CiPaw.14G015600 Carya illinoinensis HOM05D004294 ORTHO05D004899 2.3e-17 92.4 53 88.7
QL04p025854 Quercus lobata HOM05D004294 ORTHO05D004899 5.1e-17 91.3 52 86.5
CiPaw.13G021200 Carya illinoinensis HOM05D004294 ORTHO05D004899 5.6e-16 87.8 53 83.0
Eucgr.E01714 Eucalyptus grandis HOM05D004294 ORTHO05D004899 2.8e-15 85.5 53 79.2
Dinv43581 Davidia involucrata HOM05D004294 ORTHO05D004899 8.1e-15 84.0 53 77.4
VMungo0540G0738 Vigna mungo HOM05D004294 ORTHO05D004899 8.1e-15 84.0 53 75.5
Cfa001861 Carpinus fangiana HOM05D004294 ORTHO05D004899 1.4e-14 83.2 49 85.7
Cfa018800 Carpinus fangiana HOM05D004294 ORTHO05D004899 1.4e-14 83.2 49 85.7
Lalb_Chr14g0374351 Lupinus albus HOM05D004294 ORTHO05D004899 1.8e-14 82.8 54 74.1
GSVIVG01026772001 Vitis vinifera HOM05D004294 ORTHO05D004899 2.4e-14 82.4 53 75.5
TWI75G0011 Tripterygium wilfordii HOM05D004294 ORTHO05D004899 3.1e-14 82.0 55 72.7
Glyma.15G092700 Glycine max HOM05D004294 ORTHO05D004899 4.0e-14 81.6 53 75.5
GSVIVG01037228001 Vitis vinifera HOM05D004294 ORTHO05D004899 5.2e-14 81.3 53 73.6
Cpa.g.sc52.62 Carica papaya HOM05D004294 ORTHO05D004899 6.9e-14 80.9 53 75.5
Glyma.13G219700 Glycine max HOM05D004294 ORTHO05D004899 1.5e-13 79.7 53 73.6
Phvul.006G166400 Phaseolus vulgaris HOM05D004294 ORTHO05D004899 1.5e-13 79.7 53 71.7
Thecc.04G104900 Theobroma cacao HOM05D004294 ORTHO05D004899 2.6e-13 79.0 58 74.1
AUR62021410 Chenopodium quinoa HOM05D004294 ORTHO05D004899 3.4e-13 78.6 55 63.6
Potri.002G134800 Populus trichocarpa HOM05D004294 ORTHO05D004899 4.4e-13 78.2 56 69.6
Ah.09g230610 Amaranthus hybridus HOM05D004294 ORTHO05D004899 5.8e-13 77.8 55 65.5
Sabra02G0105000 Salix brachista HOM05D004294 ORTHO05D004899 7.6e-13 77.4 54 72.2
AUR62021407 Chenopodium quinoa HOM05D004294 ORTHO05D004899 9.9e-13 77.0 55 63.6
Rhsim08G0211800 Rhododendron simsii HOM05D004294 ORTHO05D004899 9.9e-13 77.0 53 67.9
AUR62010895 Chenopodium quinoa HOM05D004294 ORTHO05D004899 1.7e-12 76.3 55 63.6
SGA_v2.0_scaffold45G17247 Striga asiatica HOM05D004294 ORTHO05D004899 1.7e-12 76.3 53 77.4
CANSAT35G1700 Cannabis sativa HOM05D004294 ORTHO05D004899 2.9e-12 75.5 55 67.3
Lj3g0025421 Lotus japonicus HOM05D004294 ORTHO05D004899 2.9e-12 75.5 54 64.8
Sed0018514 Sechium edule HOM05D004294 ORTHO05D004899 2.9e-12 75.5 53 73.6
EL10Ac8g18381 Beta vulgaris HOM05D004294 ORTHO05D004899 3.8e-12 75.1 55 60.0
Cc02_g25750 Coffea canephora HOM05D004294 ORTHO05D004899 6.4e-12 74.3 53 69.8
Hma1.2p1_0973F.1_g243000 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 6.4e-12 74.3 55 70.9
Hma1.2p1_1440F.1_g283530 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 6.4e-12 74.3 55 70.9
MD07G1088000 Malus domestica HOM05D004294 ORTHO05D004899 1.1e-11 73.6 53 71.7
Manes.02G122400 Manihot esculenta HOM05D004294 ORTHO05D004899 1.1e-11 73.6 53 67.9
Prupe.2G114700 Prunus persica HOM05D004294 ORTHO05D004899 1.1e-11 73.6 53 71.7
CAN.G756.9 Capsicum annuum HOM05D004294 ORTHO05D004899 1.4e-11 73.2 53 69.8
ClCG05G002810 Citrullus lanatus HOM05D004294 ORTHO05D004899 1.4e-11 73.2 53 69.8
Solyc01g150146.1 Solanum lycopersicum HOM05D004294 ORTHO05D004899 1.4e-11 73.2 63 61.9
Sopen01g035370 Solanum pennellii HOM05D004294 ORTHO05D004899 1.4e-11 73.2 63 61.9
PGSC0003DMG400001711 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.4e-11 73.2 63 61.9
PGSC0003DMG400034273 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.4e-11 73.2 63 61.9
Actinidia15750 Actinidia chinensis HOM05D004294 ORTHO05D004899 1.9e-11 72.8 53 64.2
Actinidia18927 Actinidia chinensis HOM05D004294 ORTHO05D004899 1.9e-11 72.8 60 55.0
MD02G1225800 Malus domestica HOM05D004294 ORTHO05D004899 1.9e-11 72.8 53 71.7
Duzib138G0823 Durio zibethinus HOM05D004294 ORTHO05D004899 2.4e-11 72.4 60 65.0
Nitab4.5_0004088g0110 Nicotiana tabacum HOM05D004294 ORTHO05D004899 3.2e-11 72.0 63 60.3
Nitab4.5_0006873g0030 Nicotiana tabacum HOM05D004294 ORTHO05D004899 3.2e-11 72.0 63 60.3
CDE12G0039 Ceratophyllum demersum HOM05D004294 ORTHO05D004899 4.2e-11 71.6 53 69.8
CsaV3_3G010340 Cucumis sativus L. HOM05D004294 ORTHO05D004899 4.2e-11 71.6 75 54.7
Hund09105 Selenicereus undatus HOM05D004294 ORTHO05D004899 4.2e-11 71.6 55 61.8
PGSC0003DMG400001681 Solanum tuberosum HOM05D004294 ORTHO05D004899 4.2e-11 71.6 67 58.2
vmacro19009 Vaccinium macrocarpon HOM05D004294 ORTHO05D004899 4.2e-11 71.6 53 64.2
Sed0004229 Sechium edule HOM05D004294 ORTHO05D004899 5.4e-11 71.2 61 67.2
TPR.G32380 Trifolium pratense HOM05D004294 ORTHO05D004899 7.1e-11 70.9 54 68.5
ECA234G1984 Erigeron canadensis HOM05D004294 ORTHO05D004899 9.3e-11 70.5 58 60.3
Medtr2g022850 Medicago truncatula HOM05D004294 ORTHO05D004899 9.3e-11 70.5 54 68.5
ECA234G1894 Erigeron canadensis HOM05D004294 ORTHO05D004899 1.6e-10 69.7 53 64.2
HanXRQChr10g0302581 Helianthus annuus HOM05D004294 ORTHO05D004899 1.6e-10 69.7 53 64.2
Lj3g0019907 Lotus japonicus HOM05D004294 ORTHO05D004899 1.6e-10 69.7 56 60.7
TPR.G20146 Trifolium pratense HOM05D004294 ORTHO05D004899 1.6e-10 69.7 54 66.7
CSS0013781 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 2.1e-10 69.3 54 63.0
CSS0014990 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 2.1e-10 69.3 54 63.0
CSS0040335 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 2.1e-10 69.3 54 63.0
CSS0001349 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 2.7e-10 68.9 54 63.0
Medtr2g084540 Medicago truncatula HOM05D004294 ORTHO05D004899 2.7e-10 68.9 54 66.7
ATR0626G354 Amborella trichopoda HOM05D004294 ORTHO05D004899 4.6e-10 68.2 53 67.9
Ca_01696_v3 Cicer arietinum L. HOM05D004294 ORTHO05D004899 4.6e-10 68.2 52 67.3
Peaxi162Scf00102g01053 Petunia axillaris HOM05D004294 ORTHO05D004899 4.6e-10 68.2 54 66.7
TAR371G1121 Trochodendron aralioides HOM05D004294 ORTHO05D004899 6.0e-10 67.8 52 67.3
ECA234G1071 Erigeron canadensis HOM05D004294 ORTHO05D004899 7.8e-10 67.4 53 62.3
HanXRQChr17g0545891 Helianthus annuus HOM05D004294 ORTHO05D004899 7.8e-10 67.4 53 62.3
Psat2g182760 Pisum sativum HOM05D004294 ORTHO05D004899 7.8e-10 67.4 54 64.8
FvH4_7g08700 Fragaria vesca HOM05D004294 ORTHO05D004899 1.3e-09 66.6 54 70.4
FAN03G1356 Fragaria x ananassa HOM05D004294 ORTHO05D004899 1.3e-09 66.6 54 70.4
FAN06G3965 Fragaria x ananassa HOM05D004294 ORTHO05D004899 1.3e-09 66.6 54 70.4
PGSC0003DMG400001683 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.3e-09 66.6 63 57.1
RcHm_v2.0_Chr1g0343921 Rosa chinensis HOM05D004294 ORTHO05D004899 1.7e-09 66.2 54 70.4
MELO3C031598.2 Cucumis melo HOM05D004294 ORTHO05D004899 2.3e-09 65.9 53 64.2
PSO063G7341 Papaver somniferum HOM05D004294 ORTHO05D004899 3.9e-09 65.1 52 65.4
PSO782G1693 Papaver somniferum HOM05D004294 ORTHO05D004899 3.9e-09 65.1 52 65.4
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 5.1e-09 64.7 54 64.8
Lsat_1_v5_gn_4_36140 Lactuca sativa HOM05D004294 ORTHO05D004899 8.7e-09 63.9 54 61.1
PSO675G3209 Papaver somniferum HOM05D004294 ORTHO05D004899 1.1e-08 63.5 52 65.4
TAR629G2021 Trochodendron aralioides HOM05D004294 ORTHO05D004899 1.1e-08 63.5 52 65.4
FAN18G1057 Fragaria x ananassa HOM05D004294 ORTHO05D004899 1.5e-08 63.2 54 66.7
MELO3C031600.2 Cucumis melo HOM05D004294 ORTHO05D004899 1.9e-08 62.8 57 59.6
Atru.chr5.34 Acer truncatum HOM05D004294 ORTHO05D004899 2.5e-08 62.4 54 66.7
Atru.chr5.64 Acer truncatum HOM05D004294 ORTHO05D004899 2.5e-08 62.4 54 66.7
SalBow5G4501 Salvia bowleyana HOM05D004294 ORTHO05D004899 3.3e-08 62.0 53 66.0
Ciclev10022425m.g Citrus clementina HOM05D004294 ORTHO05D004899 7.3e-08 60.8 54 66.7
Nn6g34994 Nelumbo nucifera HOM05D004294 ORTHO05D004899 7.3e-08 60.8 52 63.5
arahy.Tifrunner.gnm1.ann1.ZAL8K4 Arachis hypogaea HOM05D004294 ORTHO05D004899 9.6e-08 60.5 54 63.0
PSO541G2071 Papaver somniferum HOM05D004294 ORTHO05D004899 9.6e-08 60.5 51 64.7
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 1.3e-07 60.1 54 61.1
FvH4_5g29260 Fragaria vesca HOM05D004294 ORTHO05D004899 1.3e-07 60.1 54 64.8
Sp4g08170 Schrenkiella parvula HOM05D004294 ORTHO05D004899 1.6e-07 59.7 54 59.3
Migut.K00778 Erythranthe guttata HOM05D004294 ORTHO05D004899 4.8e-07 58.2 54 63.0
Gohir.D08G177200 Gossypium hirsutum HOM05D004294 ORTHO05D004899 4.8e-07 58.2 58 58.6
Gorai.004G185600 Gossypium raimondii HOM05D004294 ORTHO05D004899 4.8e-07 58.2 58 58.6
RcHm_v2.0_Chr5g0055501 Rosa chinensis HOM05D004294 ORTHO05D004899 4.8e-07 58.2 53 60.4
MELO3C031599.2 Cucumis melo HOM05D004294 ORTHO05D004899 6.2e-07 57.8 49 61.2
Sp4g21750 Schrenkiella parvula HOM05D004294 ORTHO05D004899 6.2e-07 57.8 54 57.4
Carub.0004s2151 Capsella rubella HOM05D004294 ORTHO05D004899 1.4e-06 56.6 54 55.6
AL4G36820 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 1.8e-06 56.2 54 55.6
AT2G39445 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 1.8e-06 56.2 54 55.6
Gohir.A08G156800 Gossypium hirsutum HOM05D004294 ORTHO05D004899 1.8e-06 56.2 55 54.5
Thhalv10017327m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 2.4e-06 55.8 54 55.6
Migut.K01222 Erythranthe guttata HOM05D004294 ORTHO05D004899 3.1e-06 55.5 75 46.7
Carub.0004s0710 Capsella rubella HOM05D004294 ORTHO05D004899 5.3e-06 54.7 56 51.8
MSTRG.20657 Avicennia marina HOM05D004294 ORTHO05D004899 6.9e-06 54.3 53 56.6


User provided reference genes

Program Settings