Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017995 Carpinus fangiana HOM05D007141 ORTHO05D008975 6.8e-142 507.3 253 100.0
Haze_18140 Corylus avellana HOM05D007141 ORTHO05D008975 1.1e-25 121.3 63 88.9
CiPaw.15G035700 Carya illinoinensis HOM05D007141 ORTHO05D008975 1.7e-23 114.0 66 77.3
Manes.16G083100 Manihot esculenta HOM05D007141 ORTHO05D008975 3.0e-20 103.2 66 77.3
Ciclev10010008m.g Citrus clementina HOM05D007141 ORTHO05D008975 1.2e-18 97.8 63 71.4
Thecc.09G058700 Theobroma cacao HOM05D007141 ORTHO05D008975 3.6e-18 96.3 57 73.7
Atru.chr7.1922 Acer truncatum HOM05D007141 ORTHO05D008975 1.8e-17 94.0 66 65.2
Duzib150G0643 Durio zibethinus HOM05D007141 ORTHO05D008975 5.2e-17 92.4 57 68.4
Gohir.D07G020900 Gossypium hirsutum HOM05D007141 ORTHO05D008975 1.2e-16 91.3 59 69.5
Gorai.001G021700 Gossypium raimondii HOM05D007141 ORTHO05D008975 1.2e-16 91.3 59 69.5
Eucgr.L02859 Eucalyptus grandis HOM05D007141 ORTHO05D008975 1.5e-16 90.9 59 72.9
GSVIVG01035422001 Vitis vinifera HOM05D007141 ORTHO05D008975 2.6e-16 90.1 66 60.6
Potri.006G224400 Populus trichocarpa HOM05D007141 ORTHO05D008975 7.6e-16 88.6 58 74.1
Gohir.A07G021200 Gossypium hirsutum HOM05D007141 ORTHO05D008975 9.9e-16 88.2 59 67.8
Cc08_g11030 Coffea canephora HOM05D007141 ORTHO05D008975 2.9e-15 86.7 49 75.5
CANSAT25G2947 Cannabis sativa HOM05D007141 ORTHO05D008975 3.8e-15 86.3 46 84.8
Oeu034195.1 Olea europaea HOM05D007141 ORTHO05D008975 4.9e-15 85.9 54 68.5
Sabra06G0173500 Salix brachista HOM05D007141 ORTHO05D008975 8.4e-15 85.1 58 70.7
QL02p000427 Quercus lobata HOM05D007141 ORTHO05D008975 1.9e-14 84.0 45 77.8
Nitab4.5_0002797g0020 Nicotiana tabacum HOM05D007141 ORTHO05D008975 3.2e-14 83.2 51 66.7
Prupe.1G407800 Prunus persica HOM05D007141 ORTHO05D008975 3.2e-14 83.2 49 73.5
Actinidia25707 Actinidia chinensis HOM05D007141 ORTHO05D008975 7.1e-14 82.0 55 67.3
AUR62009107 Chenopodium quinoa HOM05D007141 ORTHO05D008975 7.1e-14 82.0 63 63.5
CSS0014882 Camellia sinensis var. sinensis HOM05D007141 ORTHO05D008975 9.2e-14 81.6 62 62.9
CDE07G1700 Ceratophyllum demersum HOM05D007141 ORTHO05D008975 1.2e-13 81.3 56 62.5
AUR62020560 Chenopodium quinoa HOM05D007141 ORTHO05D008975 1.2e-13 81.3 63 63.5
AUR62020564 Chenopodium quinoa HOM05D007141 ORTHO05D008975 1.2e-13 81.3 63 63.5
Dinv12459 Davidia involucrata HOM05D007141 ORTHO05D008975 2.7e-13 80.1 49 71.4
MD08G1066900 Malus domestica HOM05D007141 ORTHO05D008975 2.7e-13 80.1 53 66.0
SalBow4G0322 Salvia bowleyana HOM05D007141 ORTHO05D008975 2.7e-13 80.1 51 66.7
EL10Ac2g03813 Beta vulgaris HOM05D007141 ORTHO05D008975 3.5e-13 79.7 67 58.2
CSS0018983 Camellia sinensis var. sinensis HOM05D007141 ORTHO05D008975 3.5e-13 79.7 62 61.3
DCAR_003142 Daucus carota HOM05D007141 ORTHO05D008975 4.6e-13 79.3 55 61.8
FvH4_2g31430 Fragaria vesca HOM05D007141 ORTHO05D008975 4.6e-13 79.3 48 72.9
RcHm_v2.0_Chr6g0311391 Rosa chinensis HOM05D007141 ORTHO05D008975 6.0e-13 79.0 47 72.3
RcHm_v2.0_Chr7g0222241 Rosa chinensis HOM05D007141 ORTHO05D008975 6.0e-13 79.0 47 72.3
Hund03309 Selenicereus undatus HOM05D007141 ORTHO05D008975 6.0e-13 79.0 67 58.2
Glyma.06G053600 Glycine max HOM05D007141 ORTHO05D008975 1.3e-12 77.8 43 74.4
MD08G1067500 Malus domestica HOM05D007141 ORTHO05D008975 1.3e-12 77.8 50 66.0
MD09G1070200 Malus domestica HOM05D007141 ORTHO05D008975 1.3e-12 77.8 50 66.0
ClCG08G009990 Citrullus lanatus HOM05D000426 ORTHO05D000328 1.7e-12 77.4 49 67.3
Phvul.009G079400 Phaseolus vulgaris HOM05D007141 ORTHO05D008975 1.7e-12 77.4 43 72.1
Migut.A00104 Erythranthe guttata HOM05D007141 ORTHO05D008975 2.3e-12 77.0 45 68.9
FAN15G0931 Fragaria x ananassa HOM05D007141 ORTHO05D008975 2.3e-12 77.0 48 70.8
FAN24G3331 Fragaria x ananassa HOM05D007141 ORTHO05D008975 2.3e-12 77.0 48 70.8
Lalb_Chr08g0244921 Lupinus albus HOM05D007141 ORTHO05D008975 2.3e-12 77.0 43 76.7
Solyc08g062620.3 Solanum lycopersicum HOM05D007141 ORTHO05D008975 2.3e-12 77.0 55 58.2
Sopen08g018140 Solanum pennellii HOM05D007141 ORTHO05D008975 2.3e-12 77.0 55 58.2
Ah.10g034080 Amaranthus hybridus HOM05D007141 ORTHO05D008975 3.0e-12 76.6 49 69.4
Rhsim05G0069200 Rhododendron simsii HOM05D007141 ORTHO05D008975 3.0e-12 76.6 68 52.9
CAN.G11.20 Capsicum annuum HOM05D007141 ORTHO05D008975 3.9e-12 76.3 44 68.2
PGSC0003DMG400008211 Solanum tuberosum HOM05D007141 ORTHO05D008975 3.9e-12 76.3 41 73.2
SEGI_38617 Sequoiadendron giganteum HOM05D007141 ORTHO05D008975 5.1e-12 75.9 55 60.0
arahy.Tifrunner.gnm1.ann1.L1P6F7 Arachis hypogaea HOM05D007141 ORTHO05D008975 6.6e-12 75.5 54 63.0
Sed0026589 Sechium edule HOM05D007141 ORTHO05D008975 6.6e-12 75.5 51 64.7
THA.LOC104819900 Tarenaya hassleriana HOM05D007141 ORTHO05D008975 6.6e-12 75.5 53 64.2
vmacro17441 Vaccinium macrocarpon HOM05D007141 ORTHO05D008975 6.6e-12 75.5 55 56.4
vmacro22570 Vaccinium macrocarpon HOM05D007141 ORTHO05D008975 6.6e-12 75.5 55 56.4
CAN.G1181.10 Capsicum annuum HOM05D007141 ORTHO05D008975 8.7e-12 75.1 44 65.9
MELO3C011470.2 Cucumis melo HOM05D007141 ORTHO05D008975 8.7e-12 75.1 51 62.7
CsaV3_6G032120 Cucumis sativus L. HOM05D007141 ORTHO05D008975 8.7e-12 75.1 51 62.7
FAN27G0109 Fragaria x ananassa HOM05D007141 ORTHO05D008975 8.7e-12 75.1 48 66.7
MBI11_g07534_MAGBIO Magnolia biondii HOM05D007141 ORTHO05D008975 8.7e-12 75.1 59 59.3
TPR.G3578 Trifolium pratense HOM05D007141 ORTHO05D008975 8.7e-12 75.1 44 77.3
Psat5g035560 Pisum sativum HOM05D007141 ORTHO05D008975 1.1e-11 74.7 44 75.0
PSO832G0110 Papaver somniferum HOM05D007141 ORTHO05D008975 1.5e-11 74.3 42 73.8
VMungo1309G2876 Vigna mungo HOM05D007141 ORTHO05D008975 1.5e-11 74.3 43 67.4
ECA234G1667 Erigeron canadensis HOM05D007141 ORTHO05D008975 1.9e-11 73.9 43 69.8
Thhalv10026676m.g Eutrema salsugineum HOM05D007141 ORTHO05D008975 1.9e-11 73.9 49 67.3
HanXRQChr10g0309781 Helianthus annuus HOM05D007141 ORTHO05D008975 4.3e-11 72.8 43 67.4
Lsat_1_v5_gn_5_78660 Lactuca sativa HOM05D007141 ORTHO05D008975 4.3e-11 72.8 43 69.8
AL7G18460 Arabidopsis lyrata HOM05D007141 ORTHO05D008975 7.3e-11 72.0 49 65.3
AT4G33100 Arabidopsis thaliana HOM05D007141 ORTHO05D008975 7.3e-11 72.0 49 65.3
A08p17770 Brassica napus HOM05D007141 ORTHO05D008975 7.3e-11 72.0 49 65.3
BraA08t33728Z Brassica rapa HOM05D007141 ORTHO05D008975 7.3e-11 72.0 49 65.3
Sp7g30850 Schrenkiella parvula HOM05D007141 ORTHO05D008975 7.3e-11 72.0 49 63.3
Carub.0007s0735 Capsella rubella HOM05D007141 ORTHO05D008975 9.6e-11 71.6 49 65.3
TWI34G1430 Tripterygium wilfordii HOM05D007141 ORTHO05D008975 1.6e-10 70.9 63 58.7
Medtr3g104730 Medicago truncatula HOM05D007141 ORTHO05D008975 2.1e-10 70.5 41 73.2
unitig_88.g27673 Utricularia gibba HOM05D007141 ORTHO05D008975 2.1e-10 70.5 42 66.7
CARHR241130 Cardamine hirsuta HOM05D007141 ORTHO05D008975 4.7e-10 69.3 49 61.2
C03p86820 Brassica napus HOM05D007141 ORTHO05D008975 1.8e-09 67.4 49 63.3
CDE06G2239 Ceratophyllum demersum HOM05D007141 ORTHO05D008975 2.4e-09 67.0 56 55.4
BcaC09g52107 Brassica carinata HOM05D007141 ORTHO05D008975 3.1e-09 66.6 49 63.3
BolC1t00538H Brassica oleracea HOM05D007141 ORTHO05D008975 3.1e-09 66.6 49 63.3
Lj1g0005823 Lotus japonicus HOM05D007141 ORTHO05D008975 3.1e-09 66.6 49 63.3
BolC3t20976H Brassica oleracea HOM05D007141 ORTHO05D008975 4.0e-09 66.2 49 61.2
A01p05100 Brassica napus HOM05D007141 ORTHO05D008975 6.9e-09 65.5 49 63.3
C01p05580 Brassica napus HOM05D007141 ORTHO05D008975 6.9e-09 65.5 49 61.2
BraA01t00493Z Brassica rapa HOM05D007141 ORTHO05D008975 6.9e-09 65.5 49 63.3
Eucgr.C03070 Eucalyptus grandis HOM05D007141 ORTHO05D008975 6.9e-09 65.5 82 43.9
Mapoly0108s0048 Marchantia polymorpha HOM05D007141 ORTHO05D008975 1.2e-08 64.7 51 51.0
Aa31LG1G7350 Aethionema arabicum HOM05D007141 ORTHO05D008975 1.5e-08 64.3 57 56.1
BcaC09g52111 Brassica carinata HOM05D007141 ORTHO05D008975 1.5e-08 64.3 49 61.2
SEGI_00789 Sequoiadendron giganteum HOM05D007141 ORTHO05D008975 1.5e-08 64.3 63 50.8
FvH4_2g16451 Fragaria vesca HOM05D007141 ORTHO05D008975 2.6e-08 63.5 39 71.8
Os09g0361700 Oryza sativa ssp. japonica HOM05D007141 ORTHO05D008975 5.8e-08 62.4 41 68.3
Zm00001eb310860 Zea mays HOM05D007141 ORTHO05D008975 1.7e-07 60.8 60 46.7
unitig_0.g2555 Utricularia gibba HOM05D007141 ORTHO05D008975 2.4e-06 57.0 41 53.7


User provided reference genes

Program Settings