Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017974 Carpinus fangiana HOM05D005314 ORTHO05D006522 3.5e-189 664.8 345 100.0
Haze_18156 Corylus avellana HOM05D005314 ORTHO05D006522 1.8e-185 652.5 345 97.7
QL02p000736 Quercus lobata HOM05D005314 ORTHO05D006522 3.5e-173 611.7 344 91.3
CiPaw.15G037000 Carya illinoinensis HOM05D005314 ORTHO05D006522 3.9e-172 608.2 345 89.0
CiPaw.16G027100 Carya illinoinensis HOM05D005314 ORTHO05D006522 6.8e-169 597.4 345 89.0
Prupe.1G409300 Prunus persica HOM05D005314 ORTHO05D006522 1.0e-164 583.6 345 85.5
Thecc.09G057100 Theobroma cacao HOM05D005314 ORTHO05D006522 3.0e-164 582.0 345 85.8
Manes.03G050000 Manihot esculenta HOM05D005314 ORTHO05D006522 5.1e-164 581.3 345 85.2
TAR369G0158 Trochodendron aralioides HOM05D005314 ORTHO05D006522 4.7e-162 574.7 345 83.8
TAR636G1106 Trochodendron aralioides HOM05D005314 ORTHO05D006522 4.7e-162 574.7 345 83.8
CANSAT25G2280 Cannabis sativa HOM05D005314 ORTHO05D006522 6.2e-162 574.3 347 86.5
Gorai.013G220600 Gossypium raimondii HOM05D005314 ORTHO05D006522 4.0e-161 571.6 345 83.5
MD15G1056700 Malus domestica HOM05D005314 ORTHO05D006522 4.0e-161 571.6 345 84.3
Gohir.D13G194600 Gossypium hirsutum HOM05D005314 ORTHO05D006522 5.2e-161 571.2 345 83.5
Potri.018G060500 Populus trichocarpa HOM05D005314 ORTHO05D006522 1.3e-159 566.6 345 83.5
Gohir.A13G187700 Gossypium hirsutum HOM05D005314 ORTHO05D006522 1.7e-159 566.2 345 82.9
Eucgr.C03058 Eucalyptus grandis HOM05D005314 ORTHO05D006522 2.9e-159 565.5 345 82.9
COL.COLO4_21084 Corchorus olitorius HOM05D005314 ORTHO05D006522 4.9e-159 564.7 345 84.3
Potri.006G226000 Populus trichocarpa HOM05D005314 ORTHO05D006522 6.4e-159 564.3 345 83.5
TWI34G0632 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 6.4e-159 564.3 345 83.5
Gorai.001G022500 Gossypium raimondii HOM05D005314 ORTHO05D006522 1.9e-158 562.8 345 82.6
MD08G1064900 Malus domestica HOM05D005314 ORTHO05D006522 1.9e-158 562.8 345 82.6
GSVIVG01035376001 Vitis vinifera HOM05D005314 ORTHO05D006522 2.4e-158 562.4 348 82.8
CSS0005464 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 3.2e-158 562.0 346 82.1
Gohir.A07G021950 Gossypium hirsutum HOM05D005314 ORTHO05D006522 5.4e-158 561.2 345 82.3
TWI32G0330 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 5.4e-158 561.2 345 83.5
Actinidia30326 Actinidia chinensis HOM05D005314 ORTHO05D006522 1.2e-157 560.1 346 82.1
PGR044G2019 Punica granatum HOM05D005314 ORTHO05D006522 2.7e-157 558.9 346 82.7
Dinv22878 Davidia involucrata HOM05D005314 ORTHO05D006522 7.8e-157 557.4 345 82.0
RcHm_v2.0_Chr6g0311221 Rosa chinensis HOM05D005314 ORTHO05D006522 7.8e-157 557.4 345 82.3
FvH4_2g31600 Fragaria vesca HOM05D005314 ORTHO05D006522 1.3e-156 556.6 345 82.0
MSTRG.25961 Avicennia marina HOM05D005314 ORTHO05D006522 2.3e-156 555.8 345 80.0
Migut.A00114 Erythranthe guttata HOM05D005314 ORTHO05D006522 1.5e-155 553.1 345 78.6
SalBow4G3021 Salvia bowleyana HOM05D005314 ORTHO05D006522 4.3e-155 551.6 345 78.8
CsaV3_4G035770 Cucumis sativus L. HOM05D005314 ORTHO05D006522 1.6e-154 549.7 345 80.6
Nn8g38796 Nelumbo nucifera HOM05D005314 ORTHO05D006522 6.2e-154 547.7 350 80.6
THA.LOC104811236 Tarenaya hassleriana HOM05D005314 ORTHO05D006522 1.4e-153 546.6 343 79.9
Hma1.2p1_0544F.1_g175630 Hydrangea macrophylla HOM05D005314 ORTHO05D006522 9.0e-153 543.9 344 80.2
BolC9t59318H Brassica oleracea HOM05D005314 ORTHO05D006522 1.5e-152 543.1 343 78.4
C09p64870 Brassica napus HOM05D005314 ORTHO05D006522 1.3e-151 540.0 343 78.1
Sp6g31630 Schrenkiella parvula HOM05D005314 ORTHO05D006522 1.3e-151 540.0 343 78.4
A10p25800 Brassica napus HOM05D005314 ORTHO05D006522 3.8e-151 538.5 343 77.6
ClCG05G017990 Citrullus lanatus HOM05D005314 ORTHO05D006522 6.4e-151 537.7 344 79.7
Solyc06g036780.3 Solanum lycopersicum HOM05D005314 ORTHO05D006522 8.4e-151 537.3 345 78.6
Ca_13152_v3 Cicer arietinum L. HOM05D005314 ORTHO05D006522 1.1e-150 537.0 345 80.0
Sopen06g012940 Solanum pennellii HOM05D005314 ORTHO05D006522 1.4e-150 536.6 345 78.3
Sed0001440 Sechium edule HOM05D005314 ORTHO05D006522 1.9e-150 536.2 341 79.2
BcaNung02637 Brassica carinata HOM05D005314 ORTHO05D006522 2.4e-150 535.8 343 77.3
PSO210G6435 Papaver somniferum HOM05D005314 ORTHO05D006522 3.2e-150 535.4 346 78.3
Thhalv10014010m.g Eutrema salsugineum HOM05D005314 ORTHO05D006522 1.6e-149 533.1 343 77.6
PSO210G6321 Papaver somniferum HOM05D005314 ORTHO05D006522 2.1e-149 532.7 346 78.0
TPR.G13039 Trifolium pratense HOM05D005314 ORTHO05D006522 2.1e-149 532.7 347 79.5
SGA_v2.0_scaffold20G09204 Striga asiatica HOM05D005314 ORTHO05D006522 2.7e-149 532.3 392 70.7
Aqoxy7G04033 Aquilegia oxysepala HOM05D000411 ORTHO05D006522 3.5e-149 531.9 337 79.2
CAN.G130.11 Capsicum annuum HOM05D005314 ORTHO05D006522 4.6e-149 531.6 345 77.7
A02p01290 Brassica napus HOM05D005314 ORTHO05D006522 6.0e-149 531.2 343 77.0
BraA02t05108Z Brassica rapa HOM05D005314 ORTHO05D006522 6.0e-149 531.2 343 77.0
Medtr1g015820 Medicago truncatula HOM05D005314 ORTHO05D006522 7.9e-149 530.8 347 79.5
Lj1g0000731 Lotus japonicus HOM05D005314 ORTHO05D006522 1.0e-148 530.4 345 78.3
Glyma.06G053100 Glycine max HOM05D005314 ORTHO05D006522 1.3e-148 530.0 345 79.1
AL6G22740 Arabidopsis lyrata HOM05D005314 ORTHO05D006522 1.8e-148 529.6 343 77.0
BcaC03g13403 Brassica carinata HOM05D005314 ORTHO05D006522 1.8e-148 529.6 343 76.7
C02p05500 Brassica napus HOM05D005314 ORTHO05D006522 1.8e-148 529.6 343 76.7
BolC2t06496H Brassica oleracea HOM05D005314 ORTHO05D006522 1.8e-148 529.6 343 76.7
BraA10t44644Z Brassica rapa HOM05D005314 ORTHO05D006522 1.8e-148 529.6 355 74.9
FAN27G1630 Fragaria x ananassa HOM05D005314 ORTHO05D006522 1.8e-148 529.6 345 79.1
AT5G11960 Arabidopsis thaliana HOM05D005314 ORTHO05D006522 5.1e-148 528.1 343 76.7
Psat6g021480 Pisum sativum HOM05D005314 ORTHO05D006522 5.1e-148 528.1 345 79.7
Ciclev10008891m.g Citrus clementina HOM05D005314 ORTHO05D006522 6.7e-148 527.7 337 81.0
Carub.0006s1050 Capsella rubella HOM05D005314 ORTHO05D006522 2.5e-147 525.8 343 76.1
AUR62009122 Chenopodium quinoa HOM05D005314 ORTHO05D006522 2.5e-147 525.8 343 77.3
Cc08_g10890 Coffea canephora HOM05D005314 ORTHO05D006522 3.3e-147 525.4 345 76.5
Glyma.14G097400 Glycine max HOM05D005314 ORTHO05D006522 1.6e-146 523.1 351 77.2
Lalb_Chr11g0063171 Lupinus albus HOM05D005314 ORTHO05D006522 1.6e-146 523.1 345 78.0
MELO3C016882.2 Cucumis melo HOM05D005314 ORTHO05D006522 2.8e-146 522.3 345 78.0
Aa31LG3G15270 Aethionema arabicum HOM05D005314 ORTHO05D006522 5.3e-145 518.1 355 73.8
Rhsim11G0042200 Rhododendron simsii HOM05D005314 ORTHO05D006522 5.3e-145 518.1 367 74.1
Phvul.001G037500 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 1.2e-144 516.9 345 76.2
Phvul.009G078900 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 1.5e-144 516.5 336 76.2
ECA233G4949 Erigeron canadensis HOM05D005314 ORTHO05D006522 1.7e-143 513.1 347 77.8
Lsat_1_v5_gn_6_14601 Lactuca sativa HOM05D005314 ORTHO05D006522 2.2e-143 512.7 345 77.4
Sabra18G0054400 Salix brachista HOM05D005314 ORTHO05D006522 2.2e-143 512.7 415 67.7
Peaxi162Scf01088g00005 Petunia axillaris HOM05D005314 ORTHO05D006522 6.4e-143 511.1 325 78.8
ATR0789G137 Amborella trichopoda HOM05D005314 ORTHO05D006522 2.4e-142 509.2 345 74.2
VMungo0647G2045 Vigna mungo HOM05D005314 ORTHO05D006522 3.2e-142 508.8 358 74.0
Hund19438 Selenicereus undatus HOM05D005314 ORTHO05D006522 7.4e-139 497.7 343 75.2
HanXRQChr08g0226511 Helianthus annuus HOM05D005314 ORTHO05D006522 2.1e-138 496.1 341 76.0
CDE06G1634 Ceratophyllum demersum HOM05D005314 ORTHO05D006522 4.8e-138 495.0 345 75.4
Lalb_Chr22g0356141 Lupinus albus HOM05D005314 ORTHO05D006522 5.3e-137 491.5 308 79.2
FAN15G2750 Fragaria x ananassa HOM05D005314 ORTHO05D006522 1.2e-136 490.3 313 79.9
FAN24G2134 Fragaria x ananassa HOM05D005314 ORTHO05D006522 3.4e-136 488.8 308 80.5
MBI01_g21122_MAGBIO Magnolia biondii HOM05D005314 ORTHO05D006522 1.3e-135 486.9 336 74.4
HPP92_007653 Vanilla planifolia HOM05D005314 ORTHO05D006522 4.9e-135 485.0 338 72.2
Atru.chr7.1939 Acer truncatum HOM05D005314 ORTHO05D006522 6.5e-135 484.6 272 90.1
VMungo1309G2963 Vigna mungo HOM05D005314 ORTHO05D006522 1.4e-134 483.4 336 72.9
Glyma.04G052700 Glycine max HOM05D005314 ORTHO05D006522 4.6e-133 478.4 308 79.2
Lalb_Chr14g0366381 Lupinus albus HOM05D005314 ORTHO05D006522 4.8e-130 468.4 272 85.3
Glyma.17G227100 Glycine max HOM05D005314 ORTHO05D006522 5.0e-127 458.4 345 71.3
arahy.Tifrunner.gnm1.ann1.VQ1HGR Arachis hypogaea HOM05D005314 ORTHO05D006522 5.5e-126 454.9 345 70.7
Lj8A530G14 Lonicera japonica HOM05D005314 ORTHO05D006522 1.9e-123 446.4 295 78.3
DCAR_007733 Daucus carota HOM05D005314 ORTHO05D006522 3.3e-123 445.7 401 62.1
Sabra06G0174700 Salix brachista HOM05D005314 ORTHO05D006522 1.3e-122 443.7 418 60.0
Sc23g0005690 Simmondsia chinensis HOM05D005314 ORTHO05D006522 9.1e-121 437.6 343 67.9
arahy.Tifrunner.gnm1.ann1.UTD444 Arachis hypogaea HOM05D005314 ORTHO05D006522 2.0e-120 436.4 345 67.8
arahy.Tifrunner.gnm1.ann1.GAY7D4 Arachis hypogaea HOM05D005314 ORTHO05D006522 5.9e-120 434.9 345 67.5
vmacro00123 Vaccinium macrocarpon HOM05D005314 ORTHO05D006522 1.6e-117 426.8 292 75.3
Oeu003996.1 Olea europaea HOM05D005314 ORTHO05D006522 2.6e-115 419.5 319 70.2
Duzib150G1607 Durio zibethinus HOM05D005314 ORTHO05D006522 3.9e-108 395.6 222 87.4
EL10Ac2g03829 Beta vulgaris HOM05D005314 ORTHO05D006522 2.4e-105 386.3 343 61.2
Dinv28005 Davidia involucrata HOM05D005314 ORTHO05D006522 2.0e-104 383.3 222 85.1
unitig_88.g27677 Utricularia gibba HOM05D005314 ORTHO05D006522 2.3e-100 369.8 384 52.9
Sed0024799 Sechium edule HOM05D005314 ORTHO05D006522 8.8e-100 367.9 246 76.4
arahy.Tifrunner.gnm1.ann1.6D5JL1 Arachis hypogaea HOM05D005314 ORTHO05D006522 1.5e-99 367.1 345 60.6
Gohir.D07G021900 Gossypium hirsutum HOM05D005314 ORTHO05D006522 1.5e-94 350.5 204 86.3
Nitab4.5_0000972g0030 Nicotiana tabacum HOM05D005314 ORTHO05D006522 4.0e-92 342.4 435 49.7
Nitab4.5_0000268g0140 Nicotiana tabacum HOM05D005314 ORTHO05D006522 3.2e-86 322.8 344 54.4
Mapoly0049s0128 Marchantia polymorpha HOM05D005314 ORTHO05D006522 7.5e-83 311.6 335 49.0
Ah.10g034130 Amaranthus hybridus HOM05D005314 ORTHO05D006522 2.7e-80 303.1 249 65.1
Zm00001eb155260 Zea mays HOM05D005314 ORTHO05D006522 2.3e-79 300.1 249 63.9
MD11G1243300 Malus domestica HOM05D005314 ORTHO05D006522 3.3e-78 296.2 169 85.2
CARHR201170 Cardamine hirsuta HOM05D005314 ORTHO05D006522 2.8e-77 293.1 200 73.0
Pp3c7_50 Physcomitrium patens HOM05D005314 ORTHO05D006522 5.2e-68 262.3 315 46.0
Hund03325 Selenicereus undatus HOM05D005314 ORTHO05D006522 9.8e-67 258.1 255 56.1
Cpa.g.sc7.159 Carica papaya HOM05D005314 ORTHO05D006522 2.2e-58 230.3 165 73.3
Cpa.g.sc7.160 Carica papaya HOM05D005314 ORTHO05D006522 5.4e-57 225.7 144 80.6
Os01g0708300 Oryza sativa ssp. japonica HOM05D005314 ORTHO05D006522 1.9e-54 217.2 144 72.2
Lj7A260G18 Lonicera japonica HOM05D005314 ORTHO05D006522 5.6e-54 215.7 234 55.6
RcHm_v2.0_Chr1g0383701 Rosa chinensis HOM05D005314 ORTHO05D006522 3.4e-51 206.5 194 56.7
CBR_g50008 Chara braunii HOM05D005314 ORTHO05D006522 1.2e-48 198.0 353 36.8
arahy.Tifrunner.gnm1.ann1.IMU44M Arachis hypogaea HOM05D005314 ORTHO05D006522 6.6e-47 192.2 184 59.2
AUR62039137 Chenopodium quinoa HOM05D005314 ORTHO05D006522 1.6e-45 187.6 131 73.3
CSS0003098 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 1.1e-44 184.9 110 85.5
PRCOL_00001271 Prasinoderma coloniale HOM05D005314 ORTHO05D006522 4.4e-43 179.5 323 33.4
PGSC0003DMG400031356 Solanum tuberosum HOM05D005314 ORTHO05D006522 4.6e-40 169.5 132 68.9
Cre10.g419700 Chlamydomonas reinhardtii HOM05D005314 ORTHO05D006522 7.8e-40 168.7 335 33.4
MCO12G408 Micromonas commoda HOM05D005314 ORTHO05D006522 6.6e-39 165.6 317 33.8
BcaB03g16563 Brassica carinata HOM05D005314 ORTHO05D006522 1.1e-30 138.3 113 65.5
Gohir.D07G021800 Gossypium hirsutum HOM05D005314 ORTHO05D006522 8.1e-29 132.1 95 71.6
Oeu040341.1 Olea europaea HOM05D005314 ORTHO05D006522 1.1e-28 131.7 74 86.5
arahy.Tifrunner.gnm1.ann1.TY68CU Arachis hypogaea HOM05D005314 ORTHO05D005864 6.7e-23 112.5 106 59.4
CSS0034519 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 4.8e-21 106.3 95 64.2
SEGI_34785 Sequoiadendron giganteum HOM05D005314 ORTHO05D006522 1.4e-20 104.8 73 67.1
MD01G1007700 Malus domestica HOM05D005314 ORTHO05D246798 5.7e-06 56.2 31 87.1


User provided reference genes

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