Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017941 Carpinus fangiana HOM05D001443 ORTHO05D001352 1.5e-137 493.4 379 100.0
Haze_18206 Corylus avellana HOM05D001443 ORTHO05D001352 3.2e-119 432.6 379 86.8
CiPaw.16G029500 Carya illinoinensis HOM05D001443 ORTHO05D001352 6.5e-104 381.7 389 68.4
CiPaw.16G029700 Carya illinoinensis HOM05D001443 ORTHO05D001352 1.9e-95 353.6 343 77.3
Prupe.1G414200 Prunus persica HOM05D001443 ORTHO05D001352 2.3e-85 320.1 392 63.0
QL02p001442 Quercus lobata HOM05D001443 ORTHO05D001352 1.1e-79 301.2 391 62.7
Duzib150G1159 Durio zibethinus HOM05D001443 ORTHO05D001352 5.5e-79 298.9 402 51.7
Manes.16G078700 Manihot esculenta HOM05D001443 ORTHO05D001352 9.7e-76 288.1 392 51.5
MD15G1061600 Malus domestica HOM05D001443 ORTHO05D001352 2.0e-73 280.4 395 58.5
FAN27G1512 Fragaria x ananassa HOM05D001443 ORTHO05D001352 5.0e-72 275.8 398 56.5
RcHm_v2.0_Chr6g0310631 Rosa chinensis HOM05D001443 ORTHO05D001352 1.5e-71 274.2 399 55.6
Duzib168G0433 Durio zibethinus HOM05D001443 ORTHO05D001352 2.3e-69 266.9 401 56.1
COL.COLO4_21036 Corchorus olitorius HOM05D001443 ORTHO05D001352 1.1e-66 258.1 401 49.6
Sed0026795 Sechium edule HOM05D001443 ORTHO05D001352 3.1e-66 256.5 386 51.0
Sabra18G0049800 Salix brachista HOM05D001443 ORTHO05D001352 4.1e-66 256.1 393 48.9
Thecc.09G052100 Theobroma cacao HOM05D001443 ORTHO05D001352 7.0e-66 255.4 393 51.7
TWI34G1891 Tripterygium wilfordii HOM05D001443 ORTHO05D001352 1.2e-65 254.6 404 49.3
Potri.018G055300 Populus trichocarpa HOM05D001443 ORTHO05D001352 1.6e-65 254.2 393 54.2
FAN20G1898 Fragaria x ananassa HOM05D001443 ORTHO05D001352 3.5e-65 253.1 397 53.9
CSS0046346 Camellia sinensis var. sinensis HOM05D001443 ORTHO05D001352 4.5e-65 252.7 313 51.8
CsaV3_2G025660 Cucumis sativus L. HOM05D001443 ORTHO05D001352 1.9e-63 247.3 414 50.2
Lalb_Chr22g0356061 Lupinus albus HOM05D001443 ORTHO05D001352 2.8e-62 243.4 293 56.0
MELO3C010761.2 Cucumis melo HOM05D001443 ORTHO05D001352 8.0e-62 241.9 394 51.5
Dinv27972 Davidia involucrata HOM05D001443 ORTHO05D001352 2.3e-61 240.4 313 55.0
ClCG08G016950 Citrullus lanatus HOM05D001443 ORTHO05D001352 2.6e-60 236.9 394 58.4
FvH4_2g32110 Fragaria vesca HOM05D001443 ORTHO05D001352 7.5e-60 235.3 408 52.2
FAN24G0735 Fragaria x ananassa HOM05D002015 ORTHO05D001352 7.5e-60 235.3 408 52.2
Ciclev10007663m.g Citrus clementina HOM05D001443 ORTHO05D001352 9.8e-60 235.0 389 50.6
Glyma.14G093200 Glycine max HOM05D001443 ORTHO05D001352 2.0e-57 227.3 395 51.1
Gohir.A06G088300 Gossypium hirsutum HOM05D001443 ORTHO05D001352 7.3e-55 218.8 394 50.8
Lalb_Chr14g0367811 Lupinus albus HOM05D001443 ORTHO05D001352 1.6e-54 217.6 295 52.2
VMungo1309G3077 Vigna mungo HOM05D001443 ORTHO05D001352 2.8e-54 216.9 382 41.4
Potri.006G231800 Populus trichocarpa HOM05D001443 ORTHO05D001352 8.0e-54 215.3 396 50.0
Cpa.g.sc7.198 Carica papaya HOM05D001443 ORTHO05D001352 1.0e-53 214.9 392 54.8
Gohir.D06G088400 Gossypium hirsutum HOM05D001443 ORTHO05D001352 3.0e-53 213.4 393 47.1
FAN15G3039 Fragaria x ananassa HOM05D001443 ORTHO05D001352 8.9e-53 211.8 396 50.8
Gorai.010G102100 Gossypium raimondii HOM05D001443 ORTHO05D001352 8.9e-53 211.8 393 46.8
Medtr3g104280 Medicago truncatula HOM05D001443 ORTHO05D001352 1.7e-51 207.6 380 42.1
MD08G1044200 Malus domestica HOM05D001443 ORTHO05D001352 1.4e-50 204.5 392 52.3
Phvul.009G076800 Phaseolus vulgaris HOM05D001443 ORTHO05D001352 1.9e-50 204.1 382 44.2
QL11p052292 Quercus lobata HOM05D001443 ORTHO05D001352 3.0e-48 196.8 307 45.6
TWI32G0683 Tripterygium wilfordii HOM05D001443 ORTHO05D001352 1.9e-47 194.1 401 44.4
Glyma.17G230300 Glycine max HOM05D001443 ORTHO05D001352 2.5e-47 193.7 393 49.4
Eucgr.C03020 Eucalyptus grandis HOM05D001443 ORTHO05D001352 2.1e-46 190.7 383 51.7
arahy.Tifrunner.gnm1.ann1.WC628Y Arachis hypogaea HOM05D001443 ORTHO05D001352 8.0e-46 188.7 380 51.1
Psat0ss1279g0040 Pisum sativum HOM05D001443 ORTHO05D001352 8.0e-46 188.7 380 42.4
Gohir.A05G043300 Gossypium hirsutum HOM05D001443 ORTHO05D001352 1.1e-45 188.3 381 41.2
Gohir.D05G045000 Gossypium hirsutum HOM05D001443 ORTHO05D001352 3.1e-45 186.8 411 39.4
Gorai.009G046100 Gossypium raimondii HOM05D001443 ORTHO05D001352 3.1e-45 186.8 411 39.4
TAR383G0280 Trochodendron aralioides HOM05D001443 ORTHO05D001352 4.0e-45 186.4 414 45.7
arahy.Tifrunner.gnm1.ann1.1JP5NC Arachis hypogaea HOM05D001443 ORTHO05D001352 6.8e-45 185.7 380 50.8
Cc08_g10400 Coffea canephora HOM05D001443 ORTHO05D001352 4.4e-44 183.0 423 44.9
Dinv23429 Davidia involucrata HOM05D001443 ORTHO05D001352 9.8e-44 181.8 398 45.2
Manes.16G078600 Manihot esculenta HOM05D001443 ORTHO05D001352 1.1e-42 178.3 390 47.2
VMungo1309G2260 Vigna mungo HOM05D001443 ORTHO05D001352 1.4e-42 177.9 381 40.7
Actinidia18193 Actinidia chinensis HOM05D001443 ORTHO05D001352 3.2e-42 176.8 389 48.6
Hma1.2p1_0450F.1_g155610 Hydrangea macrophylla HOM05D001443 ORTHO05D001352 4.1e-42 176.4 304 52.6
CANSAT25G0392 Cannabis sativa HOM05D001443 ORTHO05D001352 1.6e-41 174.5 276 51.1
Lj5g0018193 Lotus japonicus HOM05D001443 ORTHO05D001352 7.8e-41 172.2 393 43.0
arahy.Tifrunner.gnm1.ann1.7QGM13 Arachis hypogaea HOM05D001443 ORTHO05D001352 3.0e-40 170.2 395 43.8
Lj7C280G0 Lonicera japonica HOM05D001443 ORTHO05D001352 6.6e-40 169.1 389 43.4
PGSC0003DMG400029301 Solanum tuberosum HOM05D001443 ORTHO05D001352 1.5e-39 167.9 382 42.7
Hma1.2p1_0482F.1_g162680 Hydrangea macrophylla HOM05D001443 ORTHO05D001352 1.9e-39 167.5 392 43.1
CAN.G208.76 Capsicum annuum HOM05D001443 ORTHO05D001352 2.5e-39 167.2 310 50.6
CSS0045360 Camellia sinensis var. sinensis HOM05D001443 ORTHO05D001352 5.6e-39 166.0 384 41.1
DCAR_003086 Daucus carota HOM05D001443 ORTHO05D001352 5.6e-39 166.0 391 42.5
Hma1.2p1_1944F.1_g308600 Hydrangea macrophylla HOM05D001443 ORTHO05D001352 9.5e-39 165.2 392 42.9
MBI04_g37934_MAGBIO Magnolia biondii HOM05D001443 ORTHO05D001352 9.5e-39 165.2 431 39.0
Medtr1g016760 Medicago truncatula HOM05D001443 ORTHO05D001352 1.4e-37 161.4 399 47.4
TPR.G3592 Trifolium pratense HOM05D001443 ORTHO05D001352 1.8e-37 161.0 381 49.1
Nitab4.5_0001179g0110 Nicotiana tabacum HOM05D001443 ORTHO05D001352 2.3e-37 160.6 398 43.0
PGSC0003DMG400002210 Solanum tuberosum HOM05D001443 ORTHO05D001352 2.3e-37 160.6 390 44.9
Psat6g019480 Pisum sativum HOM05D001443 ORTHO05D001352 3.1e-37 160.2 407 44.5
Ca_15868_v3 Cicer arietinum L. HOM05D001443 ORTHO05D001352 4.0e-37 159.8 380 50.5
Lalb_Chr24g0399601 Lupinus albus HOM05D001443 ORTHO05D001352 3.4e-36 156.8 386 40.9
Medtr3g104270 Medicago truncatula HOM05D001443 ORTHO05D001352 7.5e-36 155.6 392 39.5
Phvul.009G076600 Phaseolus vulgaris HOM05D001443 ORTHO05D001352 1.7e-35 154.5 381 39.1
Rhsim11G0045600 Rhododendron simsii HOM05D001443 ORTHO05D001352 3.7e-35 153.3 422 41.5
DCAR_004440 Daucus carota HOM05D001443 ORTHO05D001352 8.3e-35 152.1 393 44.0
Nitab4.5_0001584g0060 Nicotiana tabacum HOM05D001443 ORTHO05D001352 1.1e-34 151.8 406 40.9
Sed0027567 Sechium edule HOM05D001443 ORTHO05D001352 1.1e-34 151.8 381 53.3
vmacro00155 Vaccinium macrocarpon HOM05D001443 ORTHO05D001352 1.4e-34 151.4 402 44.3
Nitab4.5_0009587g0010 Nicotiana tabacum HOM05D001443 ORTHO05D001352 3.2e-34 150.2 401 44.6
Oeu029405.1 Olea europaea HOM05D001443 ORTHO05D001352 2.1e-33 147.5 399 38.1
Thhalv10001945m.g Eutrema salsugineum HOM05D001443 ORTHO05D001352 3.9e-32 143.3 366 39.9
Atru.chr7.1037 Acer truncatum HOM05D001443 ORTHO05D001352 1.1e-31 141.7 383 47.8
Sopen12g031850 Solanum pennellii HOM05D001443 ORTHO05D001352 3.3e-31 140.2 394 35.3
CSS0000793 Camellia sinensis var. sinensis HOM05D001443 ORTHO05D001352 9.5e-31 138.7 394 44.9
Solyc12g095960.3 Solanum lycopersicum HOM05D001443 ORTHO05D001352 1.2e-30 138.3 386 36.8
MBI01_g02268_MAGBIO Magnolia biondii HOM05D001443 ORTHO05D001352 2.8e-30 137.1 445 47.4
CSS0022594 Camellia sinensis var. sinensis HOM05D001443 ORTHO05D001352 1.1e-29 135.2 385 38.7
Glyma.04G050500 Glycine max HOM05D001443 ORTHO05D001352 4.0e-29 133.3 305 38.0
Oeu037328.1 Olea europaea HOM05D001443 ORTHO05D001352 3.4e-28 130.2 299 40.5
Oeu018652.2 Olea europaea HOM05D001443 ORTHO05D001352 1.7e-27 127.9 390 42.1
Glyma.06G051200 Glycine max HOM05D001443 ORTHO05D001352 1.1e-26 125.2 394 33.5
Lj1g0011088 Lotus japonicus HOM05D001443 ORTHO05D001352 9.2e-26 122.1 413 36.1
Migut.E01558 Erythranthe guttata HOM05D001443 ORTHO05D001352 1.6e-25 121.3 412 34.2
Lj8C550G1 Lonicera japonica HOM05D001443 ORTHO05D001352 2.1e-25 120.9 282 48.9
Aa31LG5G9730 Aethionema arabicum HOM05D001443 ORTHO05D001352 2.7e-25 120.6 364 45.1
TAR626G0821 Trochodendron aralioides HOM05D001229 ORTHO05D001352 3.5e-25 120.2 422 40.5
Lju3103C0G13 Lonicera japonica HOM05D001443 ORTHO05D001352 4.6e-25 119.8 369 36.0
Sp4g05870 Schrenkiella parvula HOM05D001443 ORTHO05D001352 6.0e-25 119.4 290 40.7
TPR.G13013 Trifolium pratense HOM05D001443 ORTHO05D001352 1.0e-24 118.6 139 53.2
Oeu036343.1 Olea europaea HOM05D001443 ORTHO05D001352 1.3e-24 118.2 395 38.2
Nitab4.5_0000738g0120 Nicotiana tabacum HOM05D001443 ORTHO05D001352 1.7e-24 117.9 398 42.7
GSVIVG01035354001 Vitis vinifera HOM05D001443 ORTHO05D001352 3.3e-23 113.6 202 43.6
Nn8g38919 Nelumbo nucifera HOM05D001443 ORTHO05D001352 4.3e-23 113.2 433 38.8
EL10Ac2g03917 Beta vulgaris HOM05D001443 ORTHO05D001352 3.6e-22 110.2 305 40.3
ECA233G0783 Erigeron canadensis HOM05D001443 ORTHO05D001352 1.4e-21 108.2 393 35.1
AUR62022055 Chenopodium quinoa HOM05D001443 ORTHO05D001352 3.1e-21 107.1 274 38.3
Ca_13179_v3 Cicer arietinum L. HOM05D001443 ORTHO05D001352 9.0e-21 105.5 405 43.0
Os02g0224300 Oryza sativa ssp. japonica HOM05D001443 ORTHO05D001352 9.0e-21 105.5 292 43.8
Actinidia14705 Actinidia chinensis HOM05D001443 ORTHO05D001352 7.6e-20 102.4 111 55.9
THA.LOC104804517 Tarenaya hassleriana HOM05D001443 ORTHO05D001352 7.6e-20 102.4 292 40.4
PSO063G2194 Papaver somniferum HOM05D001443 ORTHO05D001352 1.4e-18 98.2 417 39.8
Sopen08g019330 Solanum pennellii HOM05D001443 ORTHO05D001352 5.4e-18 96.3 147 46.9
Migut.A00146 Erythranthe guttata HOM05D001443 ORTHO05D001352 9.3e-18 95.5 404 35.6
AUR62009169 Chenopodium quinoa HOM05D001443 ORTHO05D001352 1.6e-17 94.7 309 37.9
TAR624G0653 Trochodendron aralioides HOM05D001033 ORTHO05D002045 6.0e-17 92.8 223 37.2
Mapoly0006s0255 Marchantia polymorpha HOM05D001443 ORTHO05D001352 1.0e-16 92.0 149 49.0
Zm00001eb205070 Zea mays HOM05D001443 ORTHO05D001352 1.3e-16 91.7 148 41.9
TAR624G1164 Trochodendron aralioides HOM05D001443 ORTHO05D001352 1.7e-16 91.3 223 37.2
CARHR287340 Cardamine hirsuta HOM05D001443 ORTHO05D001352 2.3e-16 90.9 234 44.0
PSO832G3656 Papaver somniferum HOM05D001443 ORTHO05D001352 1.5e-15 88.2 437 35.9
SGA_v2.0_scaffold187G40246 Striga asiatica HOM05D001443 ORTHO05D001352 5.6e-15 86.3 105 57.1
Zm00001eb239890 Zea mays HOM05D001443 ORTHO05D001352 5.6e-15 86.3 149 40.9
AL4G18040 Arabidopsis lyrata HOM05D001443 ORTHO05D001352 2.1e-14 84.3 208 48.1
Aqoxy7G01266 Aquilegia oxysepala HOM05D001443 ORTHO05D001352 3.6e-14 83.6 440 37.3
CDE07G0803 Ceratophyllum demersum HOM05D001443 ORTHO05D001352 1.4e-13 81.6 390 34.6
BcaB08g35234 Brassica carinata HOM05D001443 ORTHO05D001352 1.8e-13 81.3 278 42.4
unitig_749.g13825 Utricularia gibba HOM05D001443 ORTHO05D001352 1.8e-13 81.3 136 41.9
ECA240G2406 Erigeron canadensis HOM05D001443 ORTHO05D001352 6.9e-13 79.3 281 34.9
PGR044G0673 Punica granatum HOM05D001443 ORTHO05D001352 6.9e-13 79.3 279 35.5
PSO210G5804 Papaver somniferum HOM05D001443 ORTHO05D001352 1.7e-11 74.7 413 36.8
AT2G25970 Arabidopsis thaliana HOM05D001443 ORTHO05D001352 4.9e-11 73.2 306 38.6
CDE06G2332 Ceratophyllum demersum HOM05D001443 ORTHO05D001352 9.3e-10 68.9 386 39.6
THA.LOC104818574 Tarenaya hassleriana HOM05D001443 ORTHO05D001352 1.6e-09 68.2 392 37.5
TAR376G0996 Trochodendron aralioides HOM05D001443 ORTHO05D001352 2.1e-09 67.8 87 47.1
A04p20190 Brassica napus HOM05D001443 ORTHO05D001352 4.6e-09 66.6 394 36.3
BraA04t17598Z Brassica rapa HOM05D001443 ORTHO05D001352 4.6e-09 66.6 394 36.3
Carub.0004s0582 Capsella rubella HOM05D001443 ORTHO05D001352 1.0e-08 65.5 406 37.7
HPP92_002838 Vanilla planifolia HOM05D001443 ORTHO05D001352 1.3e-08 65.1 254 30.7
BcaB06g29611 Brassica carinata HOM05D001443 ORTHO05D001352 1.8e-08 64.7 397 34.8
TAR628G0559 Trochodendron aralioides HOM05D001443 ORTHO05D001352 2.3e-08 64.3 91 46.2
Sc09g0009730 Simmondsia chinensis HOM05D001443 ORTHO05D001352 5.1e-08 63.2 234 37.6
Ah.10g034480 Amaranthus hybridus HOM05D001443 ORTHO05D001352 7.4e-07 59.3 408 33.1
SEGI_30547 Sequoiadendron giganteum HOM05D001443 ORTHO05D001352 1.3e-06 58.5 148 36.5
QL11p052357 Quercus lobata HOM05D001443 ORTHO05D001352 1.6e-06 58.2 262 29.8
C04p55900 Brassica napus HOM05D001443 ORTHO05D001352 3.7e-06 57.0 394 34.3
BcaC02g08312 Brassica carinata HOM05D001443 ORTHO05D001352 8.1e-06 55.8 393 33.6
BolC4t27123H Brassica oleracea HOM05D001443 ORTHO05D001352 8.1e-06 55.8 393 33.6


User provided reference genes

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