Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017935 Carpinus fangiana HOM05D005447 ORTHO05D006730 5.2e-145 517.7 259 100.0
QL02p001555 Quercus lobata HOM05D005447 ORTHO05D006730 2.8e-122 442.2 258 82.9
CiPaw.16G030000 Carya illinoinensis HOM05D005447 ORTHO05D006730 8.9e-121 437.2 260 81.9
Cpa.g.sc7.194 Carica papaya HOM05D005447 ORTHO05D006730 6.4e-119 431.0 253 82.2
Dinv27967 Davidia involucrata HOM05D005447 ORTHO05D006730 2.7e-117 425.6 256 81.2
Eucgr.C03005 Eucalyptus grandis HOM05D005447 ORTHO05D006730 5.0e-116 421.4 259 78.4
Ciclev10009241m.g Citrus clementina HOM05D005447 ORTHO05D006730 8.6e-116 420.6 254 79.1
MD08G1073300 Malus domestica HOM05D005447 ORTHO05D006730 8.6e-116 420.6 255 80.0
TWI34G1470 Tripterygium wilfordii HOM05D005447 ORTHO05D006730 2.5e-115 419.1 256 80.9
Prupe.1G414700 Prunus persica HOM05D005447 ORTHO05D006730 2.8e-114 415.6 252 79.8
Manes.16G078100 Manihot esculenta HOM05D005447 ORTHO05D006730 6.8e-113 411.0 254 79.1
RcHm_v2.0_Chr6g0310521 Rosa chinensis HOM05D005447 ORTHO05D006730 4.4e-112 408.3 256 77.0
Atru.chr7.2018 Acer truncatum HOM05D005447 ORTHO05D006730 1.3e-111 406.8 259 77.2
vmacro00161 Vaccinium macrocarpon HOM05D005447 ORTHO05D006730 2.2e-111 406.0 278 73.0
Actinidia30302 Actinidia chinensis HOM05D005447 ORTHO05D006730 1.9e-110 402.9 248 79.8
Sopen12g031820 Solanum pennellii HOM05D005447 ORTHO05D006730 3.5e-109 398.7 260 75.0
PGSC0003DMG400029302 Solanum tuberosum HOM05D005447 ORTHO05D006730 3.5e-109 398.7 260 75.8
CANSAT25G3707 Cannabis sativa HOM05D005447 ORTHO05D006730 6.0e-109 397.9 243 79.4
EL10Ac2g03925 Beta vulgaris HOM05D005447 ORTHO05D006730 3.0e-108 395.6 256 73.8
Potri.018G061800 Populus trichocarpa HOM05D005447 ORTHO05D006730 3.0e-108 395.6 261 75.5
Solyc12g095920.2 Solanum lycopersicum HOM05D005447 ORTHO05D006730 3.0e-108 395.6 260 74.6
CSS0008615 Camellia sinensis var. sinensis HOM05D005447 ORTHO05D006730 5.1e-108 394.8 255 76.1
Ca_15869_v3 Cicer arietinum L. HOM05D005447 ORTHO05D006730 8.6e-108 394.0 256 75.0
Sed0025565 Sechium edule HOM05D005447 ORTHO05D006730 8.6e-108 394.0 259 74.9
PGR044G0161 Punica granatum HOM05D005447 ORTHO05D006730 2.5e-107 392.5 259 76.1
Prupe.6G150100 Prunus persica HOM05D005447 ORTHO05D006730 3.3e-107 392.1 256 74.6
arahy.Tifrunner.gnm1.ann1.H6GXLW Arachis hypogaea HOM05D005447 ORTHO05D006730 7.3e-107 391.0 260 75.0
Sabra18G0050000 Salix brachista HOM05D005447 ORTHO05D006730 1.2e-106 390.2 251 76.9
arahy.Tifrunner.gnm1.ann1.PT16FZ Arachis hypogaea HOM05D005447 ORTHO05D006730 2.1e-106 389.4 260 74.6
Nitab4.5_0000738g0170 Nicotiana tabacum HOM05D005447 ORTHO05D006730 3.6e-106 388.7 250 74.0
VMungo1309G1567 Vigna mungo HOM05D005447 ORTHO05D006730 8.1e-106 387.5 262 71.8
Hma1.2p1_2708F.1_g327220 Hydrangea macrophylla HOM05D005447 ORTHO05D006730 1.8e-105 386.3 259 74.9
Nn8g38949 Nelumbo nucifera HOM05D005447 ORTHO05D006730 2.3e-105 386.0 259 73.7
Phvul.009G076500 Phaseolus vulgaris HOM05D005447 ORTHO05D006730 2.3e-105 386.0 262 71.8
THA.LOC104803734 Tarenaya hassleriana HOM05D005447 ORTHO05D006730 2.3e-105 386.0 230 79.6
TAR626G0638 Trochodendron aralioides HOM05D005447 ORTHO05D006730 4.0e-105 385.2 250 76.0
Hma1.2p1_1213F.1_g267530 Hydrangea macrophylla HOM05D005447 ORTHO05D006730 5.2e-105 384.8 259 74.5
Duzib168G1543 Durio zibethinus HOM05D005447 ORTHO05D006730 1.2e-104 383.6 256 77.0
Thecc.09G051400 Theobroma cacao HOM05D005447 ORTHO05D006730 1.2e-104 383.6 257 77.4
FvH4_2g32160 Fragaria vesca HOM05D005447 ORTHO05D006730 1.5e-104 383.3 255 72.9
FAN27G1388 Fragaria x ananassa HOM05D005447 ORTHO05D006730 3.4e-104 382.1 255 72.5
Lju3103C0G11 Lonicera japonica HOM05D005447 ORTHO05D006730 3.4e-104 382.1 282 69.1
Glyma.06G051000 Glycine max HOM05D005447 ORTHO05D006730 4.4e-104 381.7 262 72.9
CSS0040006 Camellia sinensis var. sinensis HOM05D005447 ORTHO05D006730 1.7e-103 379.8 253 74.7
MELO3C016858.2 Cucumis melo HOM05D005447 ORTHO05D006730 1.7e-103 379.8 259 71.8
Lalb_Chr08g0245101 Lupinus albus HOM05D005447 ORTHO05D006730 1.7e-103 379.8 260 70.8
Lj1g0020487 Lotus japonicus HOM05D005447 ORTHO05D006730 2.2e-103 379.4 251 72.5
Lsat_1_v5_gn_6_7400 Lactuca sativa HOM05D005447 ORTHO05D006730 2.9e-103 379.0 256 72.7
Peaxi162Scf00064g01636 Petunia axillaris HOM05D005447 ORTHO05D006730 3.7e-103 378.6 247 74.5
Duzib187G1160 Durio zibethinus HOM05D005447 ORTHO05D006730 4.9e-103 378.3 257 75.9
Cc08_g10370 Coffea canephora HOM05D005447 ORTHO05D006730 6.4e-103 377.9 269 69.5
Peaxi162Scf00436g00831 Petunia axillaris HOM05D005447 ORTHO05D006730 6.4e-103 377.9 259 71.8
CsaV3_4G035510 Cucumis sativus L. HOM05D005447 ORTHO05D006730 4.1e-102 375.2 259 71.0
HanXRQChr09g0251181 Helianthus annuus HOM05D005447 ORTHO05D006730 4.1e-102 375.2 253 73.9
Gorai.009G046500 Gossypium raimondii HOM05D005447 ORTHO05D006730 7.1e-102 374.4 252 76.2
Psat5g036560 Pisum sativum HOM05D005447 ORTHO05D006730 7.1e-102 374.4 258 69.8
Gohir.A05G043700 Gossypium hirsutum HOM05D005447 ORTHO05D006730 9.2e-102 374.0 252 76.2
Gohir.D05G045300 Gossypium hirsutum HOM05D005447 ORTHO05D006730 1.6e-101 373.2 252 75.8
Medtr3g081440 Medicago truncatula HOM05D005447 ORTHO05D006730 2.1e-101 372.9 256 71.1
Hma1.2p1_1944F.1_g308590 Hydrangea macrophylla HOM05D005447 ORTHO05D006730 1.0e-100 370.5 247 76.9
C07p59440 Brassica napus HOM05D005447 ORTHO05D006730 3.9e-100 368.6 245 71.4
BolC7t46387H Brassica oleracea HOM05D005447 ORTHO05D006730 3.9e-100 368.6 245 71.4
Hund03355 Selenicereus undatus HOM05D005447 ORTHO05D006730 5.1e-100 368.2 244 70.9
PSO063G2264 Papaver somniferum HOM05D005447 ORTHO05D006730 1.9e-99 366.3 254 71.7
PSO832G2924 Papaver somniferum HOM05D005447 ORTHO05D006730 2.5e-99 365.9 254 71.3
Hma1.2p1_0482F.1_g162683 Hydrangea macrophylla HOM05D005447 ORTHO05D006730 3.3e-99 365.5 239 77.4
A03p61720 Brassica napus HOM05D005447 ORTHO05D006730 4.3e-99 365.2 245 71.0
BcaNung02148 Brassica carinata HOM05D005447 ORTHO05D006730 7.3e-99 364.4 245 71.0
BraA03t15210Z Brassica rapa HOM05D005447 ORTHO05D006730 2.1e-98 362.8 245 70.2
Nitab4.5_0011306g0050 Nicotiana tabacum HOM05D005447 ORTHO05D006730 2.1e-98 362.8 260 69.2
Thhalv10025994m.g Eutrema salsugineum HOM05D005447 ORTHO05D006730 4.7e-98 361.7 250 69.2
Aa31sc248G10 Aethionema arabicum HOM05D005447 ORTHO05D006730 8.1e-98 360.9 244 70.5
CARHR240980 Cardamine hirsuta HOM05D005447 ORTHO05D006730 1.1e-97 360.5 251 68.5
AUR62022047 Chenopodium quinoa HOM05D005447 ORTHO05D006730 1.1e-97 360.5 259 69.1
Sp7g30740 Schrenkiella parvula HOM05D005447 ORTHO05D006730 1.1e-97 360.5 244 70.5
AL7G18730 Arabidopsis lyrata HOM05D005447 ORTHO05D006730 3.1e-97 359.0 244 69.7
Sc06g0000920 Simmondsia chinensis HOM05D005447 ORTHO05D006730 3.1e-97 359.0 244 73.4
ECA233G2666 Erigeron canadensis HOM05D005447 ORTHO05D006730 4.0e-97 358.6 265 69.4
SalBow4G2766 Salvia bowleyana HOM05D005447 ORTHO05D006730 2.0e-96 356.3 246 71.1
SGA_v2.0_scaffold1040G53805 Striga asiatica HOM05D005447 ORTHO05D006730 2.0e-96 356.3 250 69.2
AT4G32960 Arabidopsis thaliana HOM05D005447 ORTHO05D006730 2.6e-96 355.9 244 68.9
Psat5g106840 Pisum sativum HOM05D005447 ORTHO05D006730 7.6e-96 354.4 262 67.2
Carub.0007s0752 Capsella rubella HOM05D005447 ORTHO05D006730 2.9e-95 352.4 252 69.4
Aqoxy6G02809 Aquilegia oxysepala HOM05D005447 ORTHO05D006730 1.9e-94 349.7 251 69.3
MSTRG.11670 Avicennia marina HOM05D005447 ORTHO05D006730 5.4e-94 348.2 254 68.9
COL.COLO4_21030 Corchorus olitorius HOM05D005447 ORTHO05D006730 9.2e-94 347.4 256 71.1
Aqoxy7G03929 Aquilegia oxysepala HOM05D005447 ORTHO05D006730 2.1e-93 346.3 251 68.9
Migut.A00152 Erythranthe guttata HOM05D005447 ORTHO05D006730 2.3e-92 342.8 256 68.4
Haze_18213 Corylus avellana HOM05D005447 ORTHO05D006730 3.0e-92 342.4 172 97.7
HPP92_026778 Vanilla planifolia HOM05D005447 ORTHO05D006730 1.1e-89 334.0 242 66.1
Lj7C280G4 Lonicera japonica HOM05D005447 ORTHO05D006730 1.2e-88 330.5 282 62.8
unitig_748.g8015 Utricularia gibba HOM05D005447 ORTHO05D006730 1.2e-88 330.5 239 69.5
DCAR_004445 Daucus carota HOM05D005447 ORTHO05D006730 4.4e-88 328.6 246 65.0
DCAR_004444 Daucus carota HOM05D005447 ORTHO05D006730 8.4e-87 324.3 250 62.4
THA.LOC104818575 Tarenaya hassleriana HOM05D005447 ORTHO05D006730 5.4e-86 321.6 248 66.1
CARHR240970 Cardamine hirsuta HOM05D005447 ORTHO05D006730 1.7e-84 316.6 239 66.5
AUR62009180 Chenopodium quinoa HOM05D005447 ORTHO05D006730 5.1e-84 315.1 223 70.0
ATR0789G081 Amborella trichopoda HOM05D005447 ORTHO05D006730 8.7e-84 314.3 254 62.6
Carub.0007s0751 Capsella rubella HOM05D005447 ORTHO05D006730 2.4e-81 306.2 237 64.6
AL7G18720 Arabidopsis lyrata HOM05D005447 ORTHO05D006730 3.8e-79 298.9 237 63.3
AT4G32970 Arabidopsis thaliana HOM05D005447 ORTHO05D006730 7.1e-78 294.7 251 59.8
Os06g0150100 Oryza sativa ssp. japonica HOM05D005447 ORTHO05D006730 2.1e-77 293.1 278 52.9
Ah.11g044670 Amaranthus hybridus HOM05D005447 ORTHO05D006730 2.8e-74 282.7 258 56.2
Zm00001eb270840 Zea mays HOM05D005447 ORTHO05D006730 9.0e-73 277.7 274 52.9
SEGI_08476 Sequoiadendron giganteum HOM05D005447 ORTHO05D006730 1.2e-69 267.3 231 57.6
AUR62022045 Chenopodium quinoa HOM05D005447 ORTHO05D006730 2.7e-69 266.2 172 73.8
Nitab4.5_0001179g0010 Nicotiana tabacum HOM05D005447 ORTHO05D006730 1.0e-68 264.2 196 66.3
Pp3c6_24590 Physcomitrium patens HOM05D005447 ORTHO05D006730 2.3e-68 263.1 255 53.3
ClCG05G017740 Citrullus lanatus HOM05D005447 ORTHO05D006730 5.6e-67 258.5 172 72.1
Oeu057690.3 Olea europaea HOM05D005447 ORTHO05D006730 3.1e-65 252.7 172 72.7
CDE04G0748 Ceratophyllum demersum HOM05D005447 ORTHO05D006730 1.0e-63 247.7 176 69.3
FAN15G0839 Fragaria x ananassa HOM05D005447 ORTHO05D006730 4.6e-61 238.8 152 74.3
Mapoly0129s0035 Marchantia polymorpha HOM05D005447 ORTHO05D006730 1.5e-59 233.8 253 46.6
Eucgr.C03947 Eucalyptus grandis HOM05D005447 ORTHO05D006730 9.0e-57 224.6 169 68.6
CBR_g6395 Chara braunii HOM05D005447 ORTHO05D006730 7.9e-53 211.5 247 47.4
Nitab4.5_0000359g0050 Nicotiana tabacum HOM05D006502 ORTHO05D006730 8.8e-52 208.0 673 27.6
AUR62009181 Chenopodium quinoa HOM05D005447 ORTHO05D006730 9.7e-51 204.5 139 73.4
SMO367G0921 Selaginella moellendorffii HOM05D005447 ORTHO05D006730 2.0e-48 196.8 217 46.5
FAN24G0255 Fragaria x ananassa HOM05D005447 ORTHO05D006730 2.2e-47 193.4 137 71.5
FAN20G2744 Fragaria x ananassa HOM05D005447 ORTHO05D006730 1.4e-46 190.7 137 71.5
Oeu036349.1 Olea europaea HOM05D005447 ORTHO05D006730 6.1e-45 185.3 134 70.9
AagrBONN_evm.TU.Sc2ySwM_344.4531 Anthoceros agrestis HOM05D005447 ORTHO05D006730 2.0e-43 180.3 188 49.5
MSTRG.25940 Avicennia marina HOM05D005447 ORTHO05D006730 2.2e-39 166.8 109 72.5
VMungo0251G2120 Vigna mungo HOM05D005447 ORTHO05D006730 6.1e-37 158.7 148 52.0
AUR62025497 Chenopodium quinoa HOM05D005447 ORTHO05D006730 1.7e-31 140.6 86 76.7
Actinidia01202 Actinidia chinensis HOM05D005447 ORTHO05D006730 2.2e-31 140.2 82 80.5
VMungo0540G0355 Vigna mungo HOM05D005447 ORTHO05D006730 1.1e-30 137.9 105 63.8
GSVIVG01035346001 Vitis vinifera HOM05D005447 ORTHO05D006730 1.9e-30 137.1 91 76.9
AUR62022046 Chenopodium quinoa HOM05D005447 ORTHO05D006730 2.0e-27 127.1 259 36.3
TPR.G36227 Trifolium pratense HOM05D005447 ORTHO05D006730 2.0e-27 127.1 92 65.2
SEGI_23140 Sequoiadendron giganteum HOM05D005447 ORTHO05D006730 2.6e-27 126.7 140 47.9
C01p05700 Brassica napus HOM05D005447 ORTHO05D006730 1.1e-25 121.3 92 66.3
BolC1t00551H Brassica oleracea HOM05D005447 ORTHO05D006730 1.1e-25 121.3 92 66.3
SHI18783 Sapria himalayana HOM05D005447 ORTHO05D006730 6.1e-21 105.5 75 65.3
Cre13.g604850 Chlamydomonas reinhardtii HOM05D005447 ORTHO05D006730 1.5e-14 84.3 207 32.9
Gorai.010G105200 Gossypium raimondii HOM05D005447 ORTHO05D006730 8.9e-12 75.1 73 56.2
Gohir.D06G091250 Gossypium hirsutum HOM05D005447 ORTHO05D006730 1.7e-10 70.9 73 53.4
Gohir.D06G091325 Gossypium hirsutum HOM05D005447 ORTHO05D006730 1.7e-10 70.9 73 53.4


User provided reference genes

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