Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017926 Carpinus fangiana HOM05D004267 ORTHO05D005267 3.4e-97 358.2 167 100.0
Haze_18224 Corylus avellana HOM05D004267 ORTHO05D005267 4.9e-96 354.4 167 98.2
CiPaw.15G042300 Carya illinoinensis HOM05D004267 ORTHO05D005267 1.5e-84 316.2 167 87.4
QL02p001694 Quercus lobata HOM05D004267 ORTHO05D005267 2.4e-82 308.9 166 84.3
Psat6g019000 Pisum sativum HOM05D004267 ORTHO05D005267 2.6e-81 305.4 167 80.2
CSS0026627 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D005267 3.4e-81 305.1 167 80.2
CSS0030161 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D000002 3.4e-81 305.1 167 80.2
VMungo0647G2384 Vigna mungo HOM05D004267 ORTHO05D005267 9.9e-81 303.5 167 80.2
Glyma.14G092300 Glycine max HOM05D004267 ORTHO05D005267 1.3e-80 303.1 167 79.6
Phvul.001G033101 Phaseolus vulgaris HOM05D004267 ORTHO05D005267 2.9e-80 302.0 167 79.6
Glyma.17G231200 Glycine max HOM05D004267 ORTHO05D005267 1.1e-79 300.1 167 79.6
Ca_13187_v3 Cicer arietinum L. HOM05D004267 ORTHO05D005267 1.2e-78 296.6 167 77.8
ClCG08G016900 Citrullus lanatus HOM05D004267 ORTHO05D005267 1.2e-78 296.6 167 80.2
Lj5g0002830 Lotus japonicus HOM05D004267 ORTHO05D005267 7.8e-78 293.9 167 76.6
Sed0007787 Sechium edule HOM05D004267 ORTHO05D005267 7.8e-78 293.9 167 79.6
TPR.G12986 Trifolium pratense HOM05D004267 ORTHO05D005267 1.1e-76 290.0 167 75.4
GSVIVG01035339001 Vitis vinifera HOM05D004267 ORTHO05D005267 1.1e-76 290.0 167 77.8
Lalb_Chr14g0367901 Lupinus albus HOM05D004267 ORTHO05D005267 1.5e-76 289.7 167 77.2
Ciclev10009729m.g Citrus clementina HOM05D004267 ORTHO05D005267 2.5e-76 288.9 166 77.7
Medtr1g016900 Medicago truncatula HOM05D004267 ORTHO05D005267 7.3e-76 287.3 167 74.9
CsaV3_2G025720 Cucumis sativus L. HOM05D004267 ORTHO05D005267 9.6e-76 287.0 167 76.0
TAR636G0904 Trochodendron aralioides HOM05D004267 ORTHO05D005267 1.6e-75 286.2 167 76.6
Duzib168G1102 Durio zibethinus HOM05D004267 ORTHO05D005267 2.1e-75 285.8 167 76.0
TWI34G0953 Tripterygium wilfordii HOM05D004267 ORTHO05D005267 3.6e-75 285.0 167 75.4
Atru.chr7.2026 Acer truncatum HOM05D004267 ORTHO05D005267 1.8e-74 282.7 167 76.0
Actinidia14699 Actinidia chinensis HOM05D004267 ORTHO05D005267 1.8e-74 282.7 164 75.0
Hma1.2p1_1213F.1_g267510 Hydrangea macrophylla HOM05D004267 ORTHO05D005267 1.8e-74 282.7 167 74.9
Eucgr.C00632 Eucalyptus grandis HOM05D004267 ORTHO05D005267 2.4e-74 282.3 167 76.6
MSTRG.1674 Avicennia marina HOM05D004267 ORTHO05D005267 3.1e-74 282.0 167 74.9
Rhsim07G0144100 Rhododendron simsii HOM05D004267 ORTHO05D005267 5.2e-74 281.2 167 75.4
Thecc.09G050400 Theobroma cacao HOM05D004267 ORTHO05D005267 1.2e-73 280.0 167 73.1
Duzib187G0506 Durio zibethinus HOM05D004267 ORTHO05D005267 2.6e-73 278.9 167 74.3
Oeu036354.1 Olea europaea HOM05D004267 ORTHO05D005267 9.9e-73 276.9 167 73.7
CANSAT01G0851 Cannabis sativa HOM05D004267 ORTHO05D005267 1.7e-72 276.2 167 76.0
CANSAT01G1320 Cannabis sativa HOM05D004267 ORTHO05D005267 1.7e-72 276.2 167 76.0
Manes.03G046100 Manihot esculenta HOM05D004267 ORTHO05D005267 2.9e-72 275.4 167 71.9
Nn8g38967 Nelumbo nucifera HOM05D004267 ORTHO05D005267 2.9e-72 275.4 167 73.1
Actinidia18200 Actinidia chinensis HOM05D004267 ORTHO05D005267 3.8e-72 275.0 164 73.2
Gohir.A06G090500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 3.8e-72 275.0 167 73.7
Gohir.D06G089500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 3.8e-72 275.0 167 73.7
Gorai.010G103400 Gossypium raimondii HOM05D004267 ORTHO05D005267 3.8e-72 275.0 167 73.7
Gorai.009G047300 Gossypium raimondii HOM05D004267 ORTHO05D005267 4.9e-72 274.6 167 74.3
Gohir.A05G044300 Gossypium hirsutum HOM05D004267 ORTHO05D005267 1.1e-71 273.5 167 72.5
vmacro05276 Vaccinium macrocarpon HOM05D004267 ORTHO05D005267 1.1e-71 273.5 174 71.8
PGR031G1882 Punica granatum HOM05D004267 ORTHO05D005267 1.4e-71 273.1 167 73.1
SGA_v2.0_scaffold88G27217 Striga asiatica HOM05D004267 ORTHO05D005267 1.4e-71 273.1 167 73.1
arahy.Tifrunner.gnm1.ann1.35PLQF Arachis hypogaea HOM05D004267 ORTHO05D005267 1.6e-70 269.6 166 70.5
Prupe.1G415500 Prunus persica HOM05D004267 ORTHO05D005267 1.6e-70 269.6 167 71.3
Potri.006G233500 Populus trichocarpa HOM05D004267 ORTHO05D005267 4.6e-70 268.1 167 71.3
FAN20G1958 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.7e-69 266.2 166 70.5
Peaxi162Scf00247g00612 Petunia axillaris HOM05D004267 ORTHO05D005267 3.9e-69 265.0 167 71.9
FAN24G1314 Fragaria x ananassa HOM05D004267 ORTHO05D005267 5.1e-69 264.6 166 69.9
FvH4_2g32280 Fragaria vesca HOM05D004267 ORTHO05D005267 6.6e-69 264.2 166 69.9
RcHm_v2.0_Chr6g0310421 Rosa chinensis HOM05D004267 ORTHO05D005267 8.7e-69 263.8 166 69.3
SalBow4G2144 Salvia bowleyana HOM05D004267 ORTHO05D005267 8.7e-69 263.8 167 70.1
THA.LOC104803799 Tarenaya hassleriana HOM05D004267 ORTHO05D005267 1.1e-68 263.5 167 68.9
COL.COLO4_21022 Corchorus olitorius HOM05D004267 ORTHO05D005267 1.9e-68 262.7 189 66.1
Lsat_1_v5_gn_3_28241 Lactuca sativa HOM05D004267 ORTHO05D005267 2.5e-68 262.3 165 70.3
ATR0789G016 Amborella trichopoda HOM05D004267 ORTHO05D005267 3.3e-68 261.9 167 70.7
Lj8A557T6 Lonicera japonica HOM05D004267 ORTHO05D005267 3.3e-68 261.9 167 69.5
BolC1t00557H Brassica oleracea HOM05D004267 ORTHO05D005267 5.6e-68 261.2 168 69.0
BraA01t00509Z Brassica rapa HOM05D004267 ORTHO05D005267 5.6e-68 261.2 168 69.0
Migut.A00159 Erythranthe guttata HOM05D004267 ORTHO05D005267 5.6e-68 261.2 167 68.9
A01p05350 Brassica napus HOM05D004267 ORTHO05D005267 1.6e-67 259.6 168 68.5
Nitab4.5_0021628g0010 Nicotiana tabacum HOM05D004267 ORTHO05D005267 2.1e-67 259.2 167 70.7
C01p05770 Brassica napus HOM05D004267 ORTHO05D005267 3.6e-67 258.5 168 68.5
A03p61690 Brassica napus HOM05D004267 ORTHO05D005267 4.8e-67 258.1 168 68.5
C07p59420 Brassica napus HOM05D004267 ORTHO05D005267 4.8e-67 258.1 168 68.5
DCAR_000778 Daucus carota HOM05D004267 ORTHO05D005267 4.8e-67 258.1 167 70.7
HanXRQChr17g0539351 Helianthus annuus HOM05D004267 ORTHO05D005267 8.1e-67 257.3 165 69.7
FAN15G3631 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.1e-66 256.9 179 65.9
Cc08_g10140 Coffea canephora HOM05D004267 ORTHO05D005267 1.4e-66 256.5 167 68.9
Aa31sc248G70 Aethionema arabicum HOM05D004267 ORTHO05D005267 4.0e-66 255.0 168 67.3
BcaC09g52093 Brassica carinata HOM05D004267 ORTHO05D005267 4.0e-66 255.0 168 67.3
Thhalv10025837m.g Eutrema salsugineum HOM05D004267 ORTHO05D005267 9.0e-66 253.8 168 67.3
PSO210G6502 Papaver somniferum HOM05D004267 ORTHO05D005267 1.2e-65 253.4 167 64.1
Sp7g30710 Schrenkiella parvula HOM05D004267 ORTHO05D005267 1.2e-65 253.4 168 66.7
TAR624G0139 Trochodendron aralioides HOM05D004267 ORTHO05D005267 1.2e-65 253.4 168 68.5
Carub.0007s0755 Capsella rubella HOM05D004267 ORTHO05D005267 2.0e-65 252.7 168 67.3
Solyc11g070050.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 2.0e-65 252.7 167 69.5
Sopen11g028730 Solanum pennellii HOM05D004267 ORTHO05D005267 2.0e-65 252.7 167 69.5
AT4G32930 Arabidopsis thaliana HOM05D004267 ORTHO05D005267 2.6e-65 252.3 168 66.7
AL7G18760 Arabidopsis lyrata HOM05D004267 ORTHO05D005267 3.4e-65 251.9 168 66.7
PSO210G4696 Papaver somniferum HOM05D004267 ORTHO05D005267 4.5e-65 251.5 167 63.5
unitig_578.g16576 Utricularia gibba HOM05D004267 ORTHO05D005267 7.6e-65 250.8 164 67.7
BraA03t15208Z Brassica rapa HOM05D004267 ORTHO05D005267 1.3e-64 250.0 178 64.6
PGSC0003DMG400025516 Solanum tuberosum HOM05D004267 ORTHO05D005267 1.3e-64 250.0 167 67.7
arahy.Tifrunner.gnm1.ann1.97AHJW Arachis hypogaea HOM05D004267 ORTHO05D005267 3.8e-64 248.4 203 57.6
Dinv27959 Davidia involucrata HOM05D004267 ORTHO05D005267 6.4e-64 247.7 167 64.7
Aqoxy7G03943 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 8.4e-64 247.3 159 66.7
Sabra06G0181900 Salix brachista HOM05D004267 ORTHO05D005267 8.4e-64 247.3 219 54.8
Sc06g0000890 Simmondsia chinensis HOM05D004267 ORTHO05D005267 1.9e-63 246.1 167 65.9
Aa31LG2G6480 Aethionema arabicum HOM05D004267 ORTHO05D005267 4.2e-63 245.0 168 66.7
MBI04_g12184_MAGBIO Magnolia biondii HOM05D004267 ORTHO05D005267 3.0e-61 238.8 189 60.3
Solyc11g070060.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 3.9e-61 238.4 167 65.3
CAN.G309.57 Capsicum annuum HOM05D004267 ORTHO05D005267 5.1e-61 238.0 168 66.7
Sc09g0009630 Simmondsia chinensis HOM05D004267 ORTHO05D005267 8.7e-61 237.3 167 62.9
MELO3C010766.2 Cucumis melo HOM05D004267 ORTHO05D005267 3.3e-60 235.3 134 76.9
SEGI_14756 Sequoiadendron giganteum HOM05D004267 ORTHO05D005267 3.3e-60 235.3 167 62.9
Os01g0565600 Oryza sativa ssp. japonica HOM05D004267 ORTHO05D005267 9.6e-60 233.8 166 63.9
Zm00001eb356880 Zea mays HOM05D004267 ORTHO05D005267 1.1e-58 230.3 165 64.2
ECA246G5265 Erigeron canadensis HOM05D004267 ORTHO05D005267 9.0e-58 227.3 165 62.4
EL10Ac2g03945 Beta vulgaris HOM05D004267 ORTHO05D005267 1.4e-55 219.9 167 58.1
FAN27G1738 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.9e-55 219.5 175 57.1
Hund03363 Selenicereus undatus HOM05D004267 ORTHO05D005267 1.2e-54 216.9 189 52.9
Aqoxy408s001 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 1.8e-53 213.0 126 72.2
HPP92_004580 Vanilla planifolia HOM05D004267 ORTHO05D005267 3.9e-53 211.8 166 58.4
Nitab4.5_0000664g0030 Nicotiana tabacum HOM05D006502 ORTHO05D005267 2.8e-51 205.7 131 68.7
BcaNung02146 Brassica carinata HOM05D004267 ORTHO05D005267 8.2e-51 204.1 133 65.4
CARHR240940 Cardamine hirsuta HOM05D004267 ORTHO05D005267 4.0e-50 201.8 134 65.7
RcHm_v2.0_Chr6g0310431 Rosa chinensis HOM05D004267 ORTHO05D005267 5.3e-50 201.4 166 54.8
Gohir.D05G045900 Gossypium hirsutum HOM05D004267 ORTHO05D005267 4.5e-49 198.4 167 57.5
Pp3c5_10040 Physcomitrium patens HOM05D004267 ORTHO05D005267 1.4e-47 193.4 167 56.3
Nn6g35383 Nelumbo nucifera HOM05D004267 ORTHO05D005267 5.5e-47 191.4 128 66.4
Mapoly0044s0101 Marchantia polymorpha HOM05D004267 ORTHO05D005267 7.1e-47 191.0 167 50.3
Hund19479 Selenicereus undatus HOM05D004267 ORTHO05D005267 3.5e-46 188.7 176 48.9
DCAR_004448 Daucus carota HOM05D004267 ORTHO05D005267 1.0e-45 187.2 166 50.6
FvH4_2g32260 Fragaria vesca HOM05D004267 ORTHO05D005267 2.3e-45 186.0 164 53.0
MD08G1073900 Malus domestica HOM05D004267 ORTHO05D005267 2.5e-44 182.6 177 53.1
DCAR_004449 Daucus carota HOM05D004267 ORTHO05D005267 1.3e-43 180.3 165 50.9
CDE07G0102 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 1.6e-43 179.9 116 68.1
SMO117G0066 Selaginella moellendorffii HOM05D004267 ORTHO05D005267 2.4e-42 176.0 166 51.8
Sopen11g028740 Solanum pennellii HOM05D004267 ORTHO05D005267 9.0e-42 174.1 167 51.5
arahy.Tifrunner.gnm1.ann1.BB3MLG Arachis hypogaea HOM05D004267 ORTHO05D005267 1.0e-40 170.6 97 76.3
arahy.Tifrunner.gnm1.ann1.JED36R Arachis hypogaea HOM05D004267 ORTHO05D005267 1.0e-40 170.6 97 76.3
AUR62040201 Chenopodium quinoa HOM05D004267 ORTHO05D005267 8.5e-40 167.5 134 55.2
AUR62043052 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.4e-39 166.8 133 55.6
Lsat_1_v5_gn_5_67680 Lactuca sativa HOM05D004267 ORTHO05D005267 1.9e-39 166.4 131 61.1
CBR_g18691 Chara braunii HOM05D004267 ORTHO05D005267 6.1e-38 161.4 164 48.2
FAN15G2319 Fragaria x ananassa HOM05D004267 ORTHO05D005267 2.3e-37 159.5 150 51.3
Cpa.g.sc78.12 Carica papaya HOM05D004267 ORTHO05D005267 5.1e-37 158.3 98 69.4
FAN24G0417 Fragaria x ananassa HOM05D004267 ORTHO05D005267 6.7e-37 157.9 139 51.1
CDE07G1388 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 2.5e-36 156.0 104 64.4
AUR62009204 Chenopodium quinoa HOM05D004267 ORTHO05D005267 5.7e-36 154.8 131 51.9
Zm00001eb159830 Zea mays HOM05D004267 ORTHO05D005267 5.3e-34 148.3 97 70.1
AagrBONN_evm.TU.Sc2ySwM_344.4469 Anthoceros agrestis HOM05D004267 ORTHO05D005267 1.3e-32 143.7 127 49.6
GSVIVG01016838001 Vitis vinifera HOM05D004267 ORTHO05D005267 3.3e-28 129.0 165 41.8
GSVIVG01016840001 Vitis vinifera HOM05D004267 ORTHO05D005267 1.3e-27 127.1 165 41.8
BcaC07g42315 Brassica carinata HOM05D004267 ORTHO05D005267 1.7e-27 126.7 183 42.6
Rhsim01G0086000 Rhododendron simsii HOM05D004267 ORTHO05D005267 2.2e-27 126.3 80 67.5
Peaxi162Scf00545g00002 Petunia axillaris HOM05D004267 ORTHO05D005267 5.3e-26 121.7 148 42.6
Oeu057699.1 Olea europaea HOM05D004267 ORTHO05D005267 6.5e-24 114.8 112 49.1
Aqoxy7G03867 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 8.5e-24 114.4 126 42.1
Aqoxy7G03891 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 2.0e-20 103.2 89 50.6
Peaxi162Scf00545g00001 Petunia axillaris HOM05D004267 ORTHO05D005267 3.7e-19 99.0 95 48.4
AUR62002213 Chenopodium quinoa HOM05D004267 ORTHO05D005267 9.4e-15 84.3 64 56.2
AUR62018016 Chenopodium quinoa HOM05D004267 ORTHO05D005267 9.4e-15 84.3 64 56.2
AUR62022800 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.7e-14 82.8 65 55.4
AUR62010512 Chenopodium quinoa HOM05D004267 ORTHO05D005267 8.0e-14 81.3 57 59.6
Cre09.g395800 Chlamydomonas reinhardtii HOM05D004267 ORTHO05D005267 2.3e-13 79.7 163 28.8
AUR62034857 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.2e-12 77.4 64 53.1
AUR62007889 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.5e-12 77.0 57 57.9
AUR62044607 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.6e-12 76.3 64 51.6
Nitab4.5_0001927g0060 Nicotiana tabacum HOM05D004267 ORTHO05D005267 1.7e-11 73.6 115 33.9
Nitab4.5_0001927g0070 Nicotiana tabacum HOM05D004267 ORTHO05D005267 4.8e-11 72.0 61 49.2
VMungo1196G0001 Vigna mungo HOM05D005620 ORTHO05D005267 5.3e-10 68.6 41 68.3
BcaB05g24144 Brassica carinata HOM05D000010 ORTHO05D000063 5.0e-08 62.0 40 75.0
BcaB04g19156 Brassica carinata HOM05D004267 ORTHO05D096112 3.2e-07 59.3 39 71.8
AUR62036408 Chenopodium quinoa HOM05D001707 ORTHO05D001694 3.2e-07 59.3 44 59.1
Thecc.06G107200 Theobroma cacao HOM05D004267 ORTHO05D044750 7.2e-07 58.2 125 29.6
CAN.G1143.36 Capsicum annuum HOM05D001836 ORTHO05D001519 9.4e-07 57.8 54 46.3
Hma1.2p1_2790F.1_g328600 Hydrangea macrophylla HOM05D005814 ORTHO05D006821 2.7e-06 56.2 36 69.4
Atru.chr2.3707 Acer truncatum HOM05D004267 ORTHO05D000004 6.1e-06 55.1 45 48.9


User provided reference genes

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