Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017911 Carpinus fangiana HOM05D007587 ORTHO05D009657 2.5e-35 151.4 66 100.0
CiPaw.15G043600 Carya illinoinensis HOM05D007587 ORTHO05D009657 2.6e-24 114.8 66 69.7
CiPaw.15G043500 Carya illinoinensis HOM05D007587 ORTHO05D009657 1.8e-22 108.6 66 66.7
QL02p001961 Quercus lobata HOM05D007587 ORTHO05D009657 4.5e-21 104.0 66 66.7
TAR381G0827 Trochodendron aralioides HOM05D007587 ORTHO05D009657 4.5e-21 104.0 66 66.7
CSS0045179 Camellia sinensis var. sinensis HOM05D007587 ORTHO05D009657 7.7e-21 103.2 68 64.7
Hma1.2p1_2651F.1_g326150 Hydrangea macrophylla HOM05D007587 ORTHO05D009657 7.7e-21 103.2 70 61.4
Zm00001eb052110 Zea mays HOM05D007587 ORTHO05D009657 1.7e-20 102.1 66 60.6
Atru.chr13.897 Acer truncatum HOM05D007587 ORTHO05D009657 8.6e-20 99.8 69 60.9
Thecc.08G082100 Theobroma cacao HOM05D007587 ORTHO05D009657 1.1e-19 99.4 66 65.2
CAN.G416.39 Capsicum annuum HOM05D007587 ORTHO05D009657 4.2e-19 97.4 74 55.4
Manes.18G051550 Manihot esculenta HOM05D007587 ORTHO05D009657 1.2e-18 95.9 66 62.1
COL.COLO4_35374 Corchorus olitorius HOM05D007587 ORTHO05D009657 3.6e-18 94.4 66 62.1
GSVIVG01034787001 Vitis vinifera HOM05D007587 ORTHO05D009657 6.1e-18 93.6 62 62.9
Cc10_g07830 Coffea canephora HOM05D007587 ORTHO05D009657 8.0e-18 93.2 66 57.6
vmacro04609 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 1.0e-17 92.8 71 54.9
Nn5g27362 Nelumbo nucifera HOM05D007587 ORTHO05D009657 2.3e-17 91.7 66 59.1
Nn5g27360 Nelumbo nucifera HOM05D007587 ORTHO05D009657 3.0e-17 91.3 66 56.1
vmacro04608 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 3.0e-17 91.3 71 54.9
Gohir.A01G124700 Gossypium hirsutum HOM05D007587 ORTHO05D009657 4.0e-17 90.9 66 59.1
Gohir.D01G112300 Gossypium hirsutum HOM05D007587 ORTHO05D009657 4.0e-17 90.9 66 59.1
Gorai.002G137200 Gossypium raimondii HOM05D007587 ORTHO05D009657 4.0e-17 90.9 66 59.1
Potri.005G150300 Populus trichocarpa HOM05D007587 ORTHO05D009657 5.2e-17 90.5 45 73.3
PGSC0003DMG400004952 Solanum tuberosum HOM05D007587 ORTHO05D009657 6.8e-17 90.1 75 53.3
vmacro04607 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 6.8e-17 90.1 71 53.5
Nn5g27361 Nelumbo nucifera HOM05D007587 ORTHO05D009657 1.5e-16 89.0 59 59.3
Migut.O00867 Erythranthe guttata HOM05D007587 ORTHO05D009657 3.4e-16 87.8 56 58.9
Nitab4.5_0015343g0010 Nicotiana tabacum HOM05D007587 ORTHO05D009657 4.4e-16 87.4 61 54.1
Actinidia29637 Actinidia chinensis HOM05D007587 ORTHO05D009657 7.5e-16 86.7 74 48.6
Migut.C00432 Erythranthe guttata HOM05D007587 ORTHO05D009657 7.5e-16 86.7 56 57.1
SalBow7G1850 Salvia bowleyana HOM05D007587 ORTHO05D009657 9.8e-16 86.3 66 54.5
Os03g0673700 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 2.2e-15 85.1 68 54.4
CDE06G1347 Ceratophyllum demersum HOM05D007587 ORTHO05D009657 1.1e-14 82.8 44 65.9
Nn4g24320 Nelumbo nucifera HOM05D007587 ORTHO05D009657 3.1e-14 81.3 45 66.7
Rhsim07G0216200 Rhododendron simsii HOM05D007587 ORTHO05D009657 3.1e-14 81.3 81 46.9
Mapoly0026s0006 Marchantia polymorpha HOM05D007587 ORTHO05D009657 5.4e-14 80.5 43 67.4
Pp3c24_89 Physcomitrium patens HOM05D007587 ORTHO05D009657 9.2e-14 79.7 68 51.5
Rhsim07G0216100 Rhododendron simsii HOM05D007587 ORTHO05D009657 9.2e-14 79.7 59 50.8
CDE04G0885 Ceratophyllum demersum HOM05D007587 ORTHO05D009657 1.6e-13 79.0 44 70.5
MBI16_g05021_MAGBIO Magnolia biondii HOM05D007587 ORTHO05D009657 2.7e-13 78.2 68 47.1
Os03g0673400 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 3.5e-13 77.8 46 63.0
Psat2g163680 Pisum sativum HOM05D007587 ORTHO05D009657 7.8e-13 76.6 65 44.6
MBI16_g05020_MAGBIO Magnolia biondii HOM05D007587 ORTHO05D009657 1.0e-12 76.3 44 63.6
Medtr5g018610 Medicago truncatula HOM05D007587 ORTHO05D009657 1.0e-12 76.3 62 46.8
QL06p044263 Quercus lobata HOM05D007587 ORTHO05D009657 1.0e-12 76.3 59 45.8
Dinv39924 Davidia involucrata HOM05D007587 ORTHO05D009657 1.7e-12 75.5 63 46.0
Pp3c20_19960 Physcomitrium patens HOM05D007587 ORTHO05D009657 1.7e-12 75.5 61 47.5
Phvul.003G249500 Phaseolus vulgaris HOM05D007587 ORTHO05D009657 2.3e-12 75.1 43 58.1
AagrBONN_evm.TU.Sc2ySwM_117.169 Anthoceros agrestis HOM05D007587 ORTHO05D009657 2.9e-12 74.7 52 51.9
TAR381G1104 Trochodendron aralioides HOM05D007587 ORTHO05D009657 3.9e-12 74.3 57 49.1
Psat0s261g0120 Pisum sativum HOM05D007587 ORTHO05D009657 5.0e-12 73.9 59 44.1
CSS0038445 Camellia sinensis var. sinensis HOM05D007587 ORTHO05D009657 8.6e-12 73.2 66 39.4
CBR_g28808 Chara braunii HOM05D007587 ORTHO05D009657 1.1e-11 72.8 45 57.8
Atru.chr3.473 Acer truncatum HOM05D007587 ORTHO05D009657 1.9e-11 72.0 43 58.1
Migut.H00502 Erythranthe guttata HOM05D007587 ORTHO05D009657 1.9e-11 72.0 64 39.1
Lj7C15T6 Lonicera japonica HOM05D007587 ORTHO05D009657 2.5e-11 71.6 65 47.7
Thecc.01G045600 Theobroma cacao HOM05D007587 ORTHO05D009657 2.5e-11 71.6 64 40.6
COL.COLO4_22178 Corchorus olitorius HOM05D007587 ORTHO05D009657 3.3e-11 71.2 43 53.5
Glyma.11G061100 Glycine max HOM05D007587 ORTHO05D009657 3.3e-11 71.2 60 41.7
Zm00001eb135300 Zea mays HOM05D007587 ORTHO05D009657 3.3e-11 71.2 57 45.6
arahy.Tifrunner.gnm1.ann1.986LRW Arachis hypogaea HOM05D007587 ORTHO05D009657 4.3e-11 70.9 65 47.7
arahy.Tifrunner.gnm1.ann1.JQT6QK Arachis hypogaea HOM05D007587 ORTHO05D009657 4.3e-11 70.9 65 47.7
Manes.13G132300 Manihot esculenta HOM05D007587 ORTHO05D009657 4.3e-11 70.9 59 44.1
TPR.G29850 Trifolium pratense HOM05D007587 ORTHO05D009657 5.6e-11 70.5 43 53.5
Ciclev10027038m.g Citrus clementina HOM05D007587 ORTHO05D009657 7.3e-11 70.1 53 47.2
Cc07_g05380 Coffea canephora HOM05D007587 ORTHO05D009657 9.5e-11 69.7 57 43.9
ECA238G1538 Erigeron canadensis HOM05D003002 ORTHO05D002276 9.5e-11 69.7 43 53.5
Prupe.7G145500 Prunus persica HOM05D007587 ORTHO05D009657 9.5e-11 69.7 60 41.7
FAN23G2556 Fragaria x ananassa HOM05D007587 ORTHO05D009657 1.2e-10 69.3 53 43.4
Glyma.16G143900 Glycine max HOM05D007587 ORTHO05D009657 1.2e-10 69.3 56 42.9
Gohir.A11G188150 Gossypium hirsutum HOM05D007587 ORTHO05D009657 1.2e-10 69.3 43 53.5
Gohir.D11G194650 Gossypium hirsutum HOM05D007587 ORTHO05D009657 1.2e-10 69.3 43 53.5
Gorai.007G208100 Gossypium raimondii HOM05D007587 ORTHO05D009657 1.2e-10 69.3 43 53.5
Lsat_1_v5_gn_2_87241 Lactuca sativa HOM05D007587 ORTHO05D009657 1.2e-10 69.3 43 53.5
Os12g0596101 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 1.6e-10 68.9 43 55.8
Phvul.002G023800 Phaseolus vulgaris HOM05D007587 ORTHO05D009657 1.6e-10 68.9 60 41.7
Cpa.g.sc15.59 Carica papaya HOM05D007587 ORTHO05D009657 2.1e-10 68.6 58 46.6
FAN28G1310 Fragaria x ananassa HOM05D007587 ORTHO05D009657 2.1e-10 68.6 43 48.8
SalBow1G8004 Salvia bowleyana HOM05D007587 ORTHO05D009657 2.1e-10 68.6 52 46.2
Glyma.02G061500 Glycine max HOM05D007587 ORTHO05D009657 2.8e-10 68.2 68 39.7
Lj2g0021293 Lotus japonicus HOM05D007587 ORTHO05D009657 2.8e-10 68.2 64 39.1
Nitab4.5_0005594g0030 Nicotiana tabacum HOM05D007587 ORTHO05D009657 2.8e-10 68.2 43 51.2
FAN26G0670 Fragaria x ananassa HOM05D007587 ORTHO05D009657 3.6e-10 67.8 53 41.5
Sed0017528 Sechium edule HOM05D007587 ORTHO05D009657 4.7e-10 67.4 62 40.3
Manes.12G097400 Manihot esculenta HOM05D007587 ORTHO05D009657 8.0e-10 66.6 43 48.8
Solyc02g090080.1 Solanum lycopersicum HOM05D007587 ORTHO05D009657 1.0e-09 66.2 43 51.2
ClCG02G013040 Citrullus lanatus HOM05D007587 ORTHO05D009657 1.4e-09 65.9 60 43.3
CsaV3_2G017120 Cucumis sativus L. HOM05D007587 ORTHO05D009657 1.8e-09 65.5 67 44.8
Glyma.19G074100 Glycine max HOM05D007587 ORTHO05D009657 1.8e-09 65.5 52 46.2
Potri.005G130750 Populus trichocarpa HOM05D007587 ORTHO05D009657 1.8e-09 65.5 52 42.3
Pp3c19_1061 Physcomitrium patens HOM05D007587 ORTHO05D009657 2.6e-08 61.6 45 48.9
Pp3c19_1062 Physcomitrium patens HOM05D007587 ORTHO05D009657 7.5e-08 60.1 44 47.7
Nn5g28989 Nelumbo nucifera HOM05D007587 ORTHO05D009657 1.4e-06 55.8 32 59.4


User provided reference genes

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