Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017898 Carpinus fangiana HOM05D003707 ORTHO05D004309 5.1e-174 614.4 326 100.0
Haze_18252 Corylus avellana HOM05D003707 ORTHO05D004309 5.1e-158 561.2 326 92.6
CiPaw.16G032500 Carya illinoinensis HOM05D003707 ORTHO05D004309 3.4e-125 452.2 322 75.2
Duzib093G2197 Durio zibethinus HOM05D003707 ORTHO05D004309 9.8e-125 450.7 324 71.6
QL02p002269 Quercus lobata HOM05D003707 ORTHO05D004309 6.3e-124 448.0 325 74.5
CiPaw.15G045200 Carya illinoinensis HOM05D003707 ORTHO05D004309 5.0e-121 438.3 324 74.7
Gohir.A06G032900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 6.1e-119 431.4 324 67.9
Duzib041G0396 Durio zibethinus HOM05D003707 ORTHO05D004309 1.0e-118 430.6 325 69.2
Lj4C96G4 Lonicera japonica HOM05D003707 ORTHO05D004309 9.8e-117 424.1 326 69.0
TWI56G1284 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 3.5e-114 415.6 326 69.3
Gohir.A05G223200 Gossypium hirsutum HOM05D003707 ORTHO05D004309 4.5e-114 415.2 322 67.1
Thecc.08G101000 Theobroma cacao HOM05D003707 ORTHO05D004309 2.3e-113 412.9 325 66.8
Hma1.2p1_1568F.1_g291110 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 5.6e-112 408.3 327 68.2
Gohir.D05G225900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.6e-111 406.8 322 65.8
Gorai.009G233400 Gossypium raimondii HOM05D003707 ORTHO05D004309 1.6e-111 406.8 322 65.8
MD15G1377500 Malus domestica HOM05D003707 ORTHO05D004309 3.6e-111 405.6 325 68.6
CSS0029872 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 1.0e-110 404.1 328 67.7
MD08G1190000 Malus domestica HOM05D003707 ORTHO05D004309 1.4e-110 403.7 325 68.0
GSVIVG01009092001 Vitis vinifera HOM05D003707 ORTHO05D004309 1.4e-110 403.7 323 68.1
Hma1.2p1_1180F.1_g264680 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 2.0e-109 399.8 328 66.2
Prupe.1G524200 Prunus persica HOM05D003707 ORTHO05D004309 2.6e-109 399.4 325 67.4
Gorai.010G037300 Gossypium raimondii HOM05D003707 ORTHO05D004309 4.4e-109 398.7 324 64.2
Gohir.D06G033800 Gossypium hirsutum HOM05D003707 ORTHO05D004309 2.9e-108 396.0 324 63.6
Nitab4.5_0003374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 2.3e-105 386.3 323 64.7
TWI12G0071 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 1.1e-104 384.0 326 64.4
Cpa.g.sc36.188 Carica papaya HOM05D003707 ORTHO05D004309 1.9e-104 383.3 326 65.0
Nitab4.5_0009374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 3.6e-103 379.0 323 65.0
Sopen04g029730 Solanum pennellii HOM05D003707 ORTHO05D004309 3.6e-103 379.0 323 63.2
Rhsim06G0077200 Rhododendron simsii HOM05D003707 ORTHO05D004309 4.7e-103 378.6 378 57.7
CAN.G1173.6 Capsicum annuum HOM05D003707 ORTHO05D004309 3.1e-102 375.9 323 62.2
Solyc04g074760.3 Solanum lycopersicum HOM05D003707 ORTHO05D004309 5.8e-101 371.7 323 62.5
Manes.18G063100 Manihot esculenta HOM05D003707 ORTHO05D004309 6.4e-100 368.2 322 62.7
Ciclev10001810m.g Citrus clementina HOM05D003707 ORTHO05D004309 1.4e-99 367.1 325 62.8
Cc00_g22270 Coffea canephora HOM05D003707 ORTHO05D004309 5.4e-99 365.2 326 60.4
Sed0001081 Sechium edule HOM05D003707 ORTHO05D004309 5.4e-99 365.2 325 61.2
vmacro11166 Vaccinium macrocarpon HOM05D003707 ORTHO05D004309 4.6e-98 362.1 326 62.3
Oeu024817.1 Olea europaea HOM05D003707 ORTHO05D004309 1.0e-97 360.9 328 61.9
HanXRQChr05g0163201 Helianthus annuus HOM05D003707 ORTHO05D004309 5.0e-97 358.6 326 60.4
FvH4_5g36300 Fragaria vesca HOM05D003707 ORTHO05D004309 5.6e-96 355.1 327 61.8
Glyma.06G100100 Glycine max HOM05D003707 ORTHO05D004309 5.6e-96 355.1 326 60.4
PGSC0003DMG400030841 Solanum tuberosum HOM05D003707 ORTHO05D004309 7.3e-96 354.8 323 59.4
Actinidia29599 Actinidia chinensis HOM05D003707 ORTHO05D004309 3.6e-95 352.4 326 61.0
Lsat_1_v5_gn_6_105560 Lactuca sativa HOM05D003707 ORTHO05D004309 4.7e-95 352.1 327 58.7
PGR031G2053 Punica granatum HOM05D003707 ORTHO05D004309 1.8e-94 350.1 326 61.0
RcHm_v2.0_Chr7g0238321 Rosa chinensis HOM05D003707 ORTHO05D004309 3.1e-94 349.4 332 62.0
Atru.chr13.1112 Acer truncatum HOM05D003707 ORTHO05D004309 6.8e-94 348.2 330 59.7
FAN04G1986 Fragaria x ananassa HOM05D003707 ORTHO05D004309 2.0e-93 346.7 327 61.2
CsaV3_3G047770 Cucumis sativus L. HOM05D003707 ORTHO05D004309 3.4e-93 345.9 325 57.2
Eucgr.F00380 Eucalyptus grandis HOM05D003707 ORTHO05D004309 5.8e-93 345.1 324 58.3
ECA246G0538 Erigeron canadensis HOM05D003707 ORTHO05D004309 7.5e-93 344.7 326 59.2
Sed0003858 Sechium edule HOM05D003707 ORTHO05D004309 9.9e-93 344.4 326 60.4
Potri.002G101400 Populus trichocarpa HOM05D003707 ORTHO05D004309 4.9e-92 342.0 329 58.7
Glyma.02G209600 Glycine max HOM05D003707 ORTHO05D004309 6.4e-92 341.7 319 61.8
EL10Ac1g01138 Beta vulgaris HOM05D003707 ORTHO05D004309 4.1e-91 339.0 324 56.5
Actinidia10349 Actinidia chinensis HOM05D003707 ORTHO05D004309 7.1e-91 338.2 323 60.1
MELO3C003545.2 Cucumis melo HOM05D003707 ORTHO05D004309 7.1e-91 338.2 325 56.6
Migut.N02874 Erythranthe guttata HOM05D003707 ORTHO05D004309 2.7e-90 336.3 327 59.3
Glyma.14G177700 Glycine max HOM05D003707 ORTHO05D004309 1.0e-89 334.3 319 59.2
THA.LOC104816564 Tarenaya hassleriana HOM05D003707 ORTHO05D004309 2.3e-89 333.2 327 57.8
PSO782G1937 Papaver somniferum HOM05D003707 ORTHO05D004309 1.1e-88 330.9 386 51.3
MSTRG.22171 Avicennia marina HOM05D003707 ORTHO05D004309 2.1e-87 326.6 327 57.5
arahy.Tifrunner.gnm1.ann1.K5H584 Arachis hypogaea HOM05D003707 ORTHO05D004309 4.7e-87 325.5 324 57.4
arahy.Tifrunner.gnm1.ann1.NXYL2L Arachis hypogaea HOM05D003707 ORTHO05D004309 6.2e-87 325.1 324 57.7
DCAR_005285 Daucus carota HOM05D003707 ORTHO05D004309 6.2e-87 325.1 327 56.9
Lalb_Chr11g0065241 Lupinus albus HOM05D003707 ORTHO05D004309 3.1e-86 322.8 309 60.8
ClCG11G014370 Citrullus lanatus HOM05D003707 ORTHO05D004309 2.0e-85 320.1 325 56.0
Ca_16005_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 7.6e-85 318.2 326 57.1
FAN13G1833 Fragaria x ananassa HOM05D003707 ORTHO05D004309 1.7e-84 317.0 285 62.1
Sabra02G0079500 Salix brachista HOM05D003707 ORTHO05D004309 4.9e-84 315.5 396 50.0
FAN18G3842 Fragaria x ananassa HOM05D003707 ORTHO05D004309 1.9e-83 313.5 289 60.9
Hund16884 Selenicereus undatus HOM05D003707 ORTHO05D004309 2.4e-83 313.2 323 55.7
PGR031G0663 Punica granatum HOM05D003707 ORTHO05D004309 1.6e-82 310.5 328 56.7
PSO063G2842 Papaver somniferum HOM05D003707 ORTHO05D004309 2.7e-82 309.7 386 49.2
Dinv07080 Davidia involucrata HOM05D003707 ORTHO05D004309 7.8e-82 308.1 333 56.8
HanXRQChr10g0278171 Helianthus annuus HOM05D003707 ORTHO05D004309 1.3e-81 307.4 326 54.9
VMungo1309G1468 Vigna mungo HOM05D003707 ORTHO05D004309 3.0e-81 306.2 325 55.1
Psat2g069400 Pisum sativum HOM05D003707 ORTHO05D004309 6.6e-81 305.1 326 54.6
Aa31LG9G14730 Aethionema arabicum HOM05D003707 ORTHO05D004309 3.3e-80 302.8 325 53.5
Lj1g0011682 Lotus japonicus HOM05D003707 ORTHO05D004309 3.3e-80 302.8 324 54.0
Phvul.009G033700 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 7.3e-80 301.6 322 55.9
SalBow2G0015 Salvia bowleyana HOM05D003707 ORTHO05D004309 1.2e-79 300.8 327 55.7
SalBow2G2952 Salvia bowleyana HOM05D003707 ORTHO05D004309 1.2e-79 300.8 327 55.7
ECA247G2086 Erigeron canadensis HOM05D003707 ORTHO05D004309 8.1e-79 298.1 326 54.6
CSS0014867 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 3.1e-78 296.2 326 54.9
CSS0001361 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 4.0e-78 295.8 326 54.9
SGA_v2.0_scaffold4G02188 Striga asiatica HOM05D003707 ORTHO05D004309 7.6e-77 291.6 326 53.4
Lalb_Chr04g0253021 Lupinus albus HOM05D003707 ORTHO05D004309 6.4e-76 288.5 323 54.2
VMungo0647G1227 Vigna mungo HOM05D003707 ORTHO05D004309 1.4e-75 287.3 328 54.6
TPR.G12497 Trifolium pratense HOM05D003707 ORTHO05D004309 9.3e-75 284.6 370 48.4
Nn4g24800 Nelumbo nucifera HOM05D003707 ORTHO05D004309 1.7e-73 280.4 383 47.8
CARHR260110 Cardamine hirsuta HOM05D003707 ORTHO05D004309 2.3e-73 280.0 323 49.8
Glyma.04G098500 Glycine max HOM05D003707 ORTHO05D004309 2.3e-73 280.0 276 55.8
Phvul.008G177200 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 1.5e-72 277.3 323 53.9
BcaB01g02805 Brassica carinata HOM05D003707 ORTHO05D004309 1.3e-71 274.2 329 51.4
TPR.G6353 Trifolium pratense HOM05D003707 ORTHO05D004309 4.0e-70 269.2 329 51.4
MSTRG.24439 Avicennia marina HOM05D003707 ORTHO05D004309 5.3e-70 268.9 264 58.3
Psat5g050280 Pisum sativum HOM05D003707 ORTHO05D004309 6.9e-70 268.5 310 52.9
Medtr3g099600 Medicago truncatula HOM05D003707 ORTHO05D004309 1.2e-69 267.7 356 48.0
Sp6g08460 Schrenkiella parvula HOM05D003707 ORTHO05D004309 2.0e-69 266.9 323 49.5
unitig_578.g16186 Utricularia gibba HOM05D003707 ORTHO05D004309 2.6e-69 266.5 338 48.8
Peaxi162Scf00139g00014 Petunia axillaris HOM05D003707 ORTHO05D004309 4.5e-69 265.8 331 51.4
Ca_16033_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 4.2e-67 259.2 374 46.0
Thhalv10028816m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 1.2e-66 257.7 290 49.3
BraA03t12047Z Brassica rapa HOM05D003707 ORTHO05D004309 3.9e-65 252.7 357 45.9
AL6G41440 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 1.5e-64 250.8 324 46.6
COL.COLO4_11998 Corchorus olitorius HOM05D003707 ORTHO05D004309 7.4e-64 248.4 325 47.1
unitig_8.g4846 Utricularia gibba HOM05D003707 ORTHO05D004309 3.7e-63 246.1 275 51.6
BcaB02g06540 Brassica carinata HOM05D003707 ORTHO05D004309 1.8e-62 243.8 301 49.5
Thhalv10008342m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 2.4e-62 243.4 312 46.2
AT4G09060 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 2.6e-61 240.0 324 46.3
MD08G1189700 Malus domestica HOM05D003707 ORTHO05D004309 4.5e-61 239.2 195 66.7
Sp1g13060 Schrenkiella parvula HOM05D003707 ORTHO05D004309 3.8e-60 236.1 307 48.2
BcaC01g04732 Brassica carinata HOM05D003707 ORTHO05D004309 1.4e-59 234.2 326 47.2
C03p34360 Brassica napus HOM05D003707 ORTHO05D004309 1.9e-59 233.8 327 47.4
AT1G14680 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 3.2e-59 233.0 311 45.7
A03p28420 Brassica napus HOM05D003707 ORTHO05D004309 1.2e-58 231.1 327 45.6
Carub.0001s1444 Capsella rubella HOM05D003707 ORTHO05D004309 2.7e-58 229.9 311 46.3
Carub.0006s2764 Capsella rubella HOM05D003707 ORTHO05D004309 1.8e-57 227.3 321 43.9
BolC3t15746H Brassica oleracea HOM05D003707 ORTHO05D004309 3.9e-57 226.1 356 43.5
C05p12640 Brassica napus HOM05D003707 ORTHO05D004309 6.7e-57 225.3 302 44.4
Aqoxy3G04171 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 1.9e-56 223.8 383 41.0
AUR62027820 Chenopodium quinoa HOM05D003707 ORTHO05D004309 5.6e-56 222.2 256 51.6
A09p29580 Brassica napus HOM05D003707 ORTHO05D004309 1.8e-54 217.2 325 45.5
BraA06t24253Z Brassica rapa HOM05D003707 ORTHO05D004309 1.8e-54 217.2 302 44.7
BraA09t38526Z Brassica rapa HOM05D003707 ORTHO05D004309 1.8e-54 217.2 325 45.5
Hund26994 Selenicereus undatus HOM05D003707 ORTHO05D004309 1.8e-54 217.2 304 44.4
AUR62018979 Chenopodium quinoa HOM05D003707 ORTHO05D004309 3.4e-53 213.0 255 49.8
BcaC05g25387 Brassica carinata HOM05D003707 ORTHO05D004309 1.0e-52 211.5 297 44.1
CARHR015180 Cardamine hirsuta HOM05D003707 ORTHO05D004309 2.9e-52 209.9 313 43.8
A06p10740 Brassica napus HOM05D003707 ORTHO05D004309 6.5e-52 208.8 302 43.7
CANSAT25G0959 Cannabis sativa HOM05D003707 ORTHO05D004309 1.4e-51 207.6 322 43.8
BcaB01g01380 Brassica carinata HOM05D003707 ORTHO05D004309 4.2e-51 206.1 329 45.0
AL1G26650 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 1.2e-50 204.5 310 43.2
Oeu029729.1 Olea europaea HOM05D003707 ORTHO05D004309 3.0e-49 199.9 148 68.2
HanXRQChr17g0556331 Helianthus annuus HOM05D003707 ORTHO05D004309 5.1e-49 199.1 211 50.2
Duzib114G0708 Durio zibethinus HOM05D003707 ORTHO05D004309 2.0e-45 187.2 152 62.5
RcHm_v2.0_Chr3g0481851 Rosa chinensis HOM05D003707 ORTHO05D004309 2.0e-45 187.2 146 67.1
MBI03_g38469_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 3.4e-45 186.4 371 36.1
MBI06_g34539_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 4.5e-45 186.0 274 46.0
Hma1.2p1_0526F.1_g172810 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 3.2e-43 179.9 181 59.7
HPP92_025845 Vanilla planifolia HOM05D003707 ORTHO05D004309 3.9e-41 172.9 326 39.3
MD08G1190200 Malus domestica HOM05D003707 ORTHO05D004309 5.1e-41 172.6 224 48.2
Oeu029730.1 Olea europaea HOM05D003707 ORTHO05D004309 6.7e-41 172.2 173 56.1
RcHm_v2.0_Chr5g0049351 Rosa chinensis HOM05D003707 ORTHO05D004309 1.7e-39 167.5 155 60.6
MBI06_g46882_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 3.7e-39 166.4 166 55.4
MBI06_g47948_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 4.8e-39 166.0 166 55.4
BolC5t30008H Brassica oleracea HOM05D000624 ORTHO05D000495 2.4e-38 163.7 271 41.7
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 5.3e-38 162.5 141 58.9
Sc23g0000420 Simmondsia chinensis HOM05D003707 ORTHO05D004309 2.6e-37 160.2 258 45.0
ClCG08G011330 Citrullus lanatus HOM05D003707 ORTHO05D004309 5.9e-37 159.1 292 40.8
RcHm_v2.0_Chr5g0045621 Rosa chinensis HOM05D003707 ORTHO05D004309 1.1e-35 154.8 193 50.8
MBI03_g47917_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 3.2e-35 153.3 377 32.6
CDE02G0255 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 2.1e-34 150.6 152 49.3
Duzib116G0740 Durio zibethinus HOM05D003707 ORTHO05D004309 2.1e-34 150.6 105 76.2
ATR0618G286 Amborella trichopoda HOM05D003707 ORTHO05D004309 6.1e-34 149.1 311 34.7
Actinidia33120 Actinidia chinensis HOM05D003707 ORTHO05D004309 6.7e-33 145.6 198 48.0
RcHm_v2.0_Chr7g0238301 Rosa chinensis HOM05D003707 ORTHO05D004309 6.7e-33 145.6 130 62.3
Cpa.g.sc36.189 Carica papaya HOM05D003707 ORTHO05D004309 2.0e-32 144.1 290 39.3
RcHm_v2.0_Chr3g0481861 Rosa chinensis HOM05D003707 ORTHO05D004309 1.8e-30 137.5 130 66.2
RcHm_v2.0_Chr5g0045611 Rosa chinensis HOM05D003707 ORTHO05D004309 4.5e-29 132.9 131 64.9
Haze_21792 Corylus avellana HOM05D003707 ORTHO05D004309 1.7e-28 131.0 84 83.3
EL10Ac4g09478 Beta vulgaris HOM05D029458 ORTHO05D004309 5.5e-27 125.9 96 64.6
BcaC07g41551 Brassica carinata HOM05D003707 ORTHO05D032288 5.5e-27 125.9 264 34.1
Medtr5g064800 Medicago truncatula HOM05D009584 ORTHO05D011650 1.8e-25 120.9 212 44.3
C09p37650 Brassica napus HOM05D003707 ORTHO05D004309 2.6e-21 107.1 219 39.3
BolC9t56595H Brassica oleracea HOM05D003707 ORTHO05D004309 2.6e-21 107.1 219 39.3
C08p45530 Brassica napus HOM05D000624 ORTHO05D000495 2.5e-19 100.5 178 36.5
BolC8t52105H Brassica oleracea HOM05D000624 ORTHO05D000495 2.5e-19 100.5 178 36.5
BcaC04g20946 Brassica carinata HOM05D003707 ORTHO05D004309 1.2e-18 98.2 204 37.3
CDE05G1426 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 1.6e-18 97.8 219 32.9
Os02g0831400 Oryza sativa ssp. japonica HOM05D003707 ORTHO05D004309 3.6e-18 96.7 267 33.3
RcHm_v2.0_Chr5g0040961 Rosa chinensis HOM05D003707 ORTHO05D004309 8.0e-18 95.5 95 61.1
Zm00001eb259540 Zea mays HOM05D003707 ORTHO05D004309 4.0e-17 93.2 324 30.2
Hma1.2p1_0526F.1_g172800 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 3.3e-16 90.1 48 87.5
MELO3C030322.2 Cucumis melo HOM05D003707 ORTHO05D004309 2.4e-14 84.0 226 33.6
RcHm_v2.0_Chr5g0049341 Rosa chinensis HOM05D003707 ORTHO05D004309 4.7e-10 69.7 91 53.8
RcHm_v2.0_Chr5g0044811 Rosa chinensis HOM05D003707 ORTHO05D004309 1.0e-09 68.6 60 56.7
MBI12_g20562_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.2e-08 65.1 50 64.0
Lsat_1_v5_gn_1_3000 Lactuca sativa HOM05D003707 ORTHO05D004309 2.0e-08 64.3 102 48.0
Mapoly0003s0015 Marchantia polymorpha HOM05D019185 ORTHO05D030113 9.8e-08 62.0 89 39.3
BcaB02g06537 Brassica carinata HOM05D003707 ORTHO05D004309 1.3e-07 61.6 51 58.8
CsaV3_2G029910 Cucumis sativus L. HOM05D003707 ORTHO05D004309 1.7e-07 61.2 92 43.5
MBI07_g40370_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.1e-06 58.5 48 62.5


User provided reference genes

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