Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017869 Carpinus fangiana HOM05D002350 ORTHO05D024861 9.3e-71 270.4 167 100.0
Cfa003192 Carpinus fangiana HOM05D002350 ORTHO05D000091 3.1e-34 149.1 79 93.7
Cfa003194 Carpinus fangiana HOM05D002350 ORTHO05D000091 3.0e-29 132.5 79 86.1
Haze_25813 Corylus avellana HOM05D002350 ORTHO05D000091 2.6e-28 129.4 79 79.7
Haze_25814 Corylus avellana HOM05D002350 ORTHO05D000091 9.7e-28 127.5 79 82.3
CiPaw.03G226000 Carya illinoinensis HOM05D002350 ORTHO05D000091 1.6e-22 110.2 79 70.9
CSS0048603 Camellia sinensis var. sinensis HOM05D002350 ORTHO05D000091 5.7e-20 101.7 79 64.6
Potri.007G081300 Populus trichocarpa HOM05D002350 ORTHO05D000091 7.4e-20 101.3 79 62.0
Potri.006G164400 Populus trichocarpa HOM05D002350 ORTHO05D000091 2.8e-19 99.4 79 62.0
PGR102G2642 Punica granatum HOM05D002350 ORTHO05D000091 3.7e-19 99.0 79 63.3
Sabra06G0136400 Salix brachista HOM05D002350 ORTHO05D000091 3.7e-19 99.0 79 62.0
ClCG03G016200 Citrullus lanatus HOM05D002350 ORTHO05D000091 4.8e-19 98.6 79 59.5
CsaV3_1G039730 Cucumis sativus L. HOM05D002350 ORTHO05D000091 4.8e-19 98.6 79 60.8
TAR624G0664 Trochodendron aralioides HOM05D002350 ORTHO05D000091 6.3e-19 98.2 88 58.0
Nn8g39091 Nelumbo nucifera HOM05D002350 ORTHO05D000091 8.2e-19 97.8 79 57.0
MELO3C015406.2 Cucumis melo HOM05D002350 ORTHO05D000091 1.4e-18 97.1 79 60.8
TAR624G0594 Trochodendron aralioides HOM05D002350 ORTHO05D000091 1.4e-18 97.1 79 59.5
Gorai.001G008800 Gossypium raimondii HOM05D002350 ORTHO05D000091 3.1e-18 95.9 79 60.8
Duzib168G1106 Durio zibethinus HOM05D002350 ORTHO05D000091 4.1e-18 95.5 79 55.7
GSVIVG01015313001 Vitis vinifera HOM05D002350 ORTHO05D000091 4.1e-18 95.5 79 59.5
Sed0013258 Sechium edule HOM05D002350 ORTHO05D000091 5.3e-18 95.1 79 59.5
Duzib150G1289 Durio zibethinus HOM05D002350 ORTHO05D000091 7.0e-18 94.7 125 44.0
Eucgr.C03764 Eucalyptus grandis HOM05D002350 ORTHO05D000091 1.2e-17 94.0 79 58.2
MBI04_g30106_MAGBIO Magnolia biondii HOM05D002350 ORTHO05D000091 1.2e-17 94.0 79 55.7
Manes.16G110000 Manihot esculenta HOM05D002350 ORTHO05D000091 1.6e-17 93.6 79 60.8
Ca_25564_v3 Cicer arietinum L. HOM05D002350 ORTHO05D000091 2.0e-17 93.2 81 54.3
Cfa012766 Carpinus fangiana HOM05D001035 ORTHO05D001045 2.6e-17 92.8 53 84.9
Duzib168G2169 Durio zibethinus HOM05D002350 ORTHO05D000091 2.6e-17 92.8 79 58.2
FAN23G2545 Fragaria x ananassa HOM05D002350 ORTHO05D000091 2.6e-17 92.8 81 56.8
FAN26G1444 Fragaria x ananassa HOM05D002350 ORTHO05D000091 2.6e-17 92.8 81 56.8
FAN26G3334 Fragaria x ananassa HOM05D002350 ORTHO05D000091 2.6e-17 92.8 81 56.8
SGA_v2.0_scaffold501G52502 Striga asiatica HOM05D002350 ORTHO05D000091 2.6e-17 92.8 90 46.7
FvH4_1g05980 Fragaria vesca HOM05D002350 ORTHO05D000091 3.5e-17 92.4 96 49.0
FAN19G1217 Fragaria x ananassa HOM05D002350 ORTHO05D000091 3.5e-17 92.4 96 49.0
MBI04_g40931_MAGBIO Magnolia biondii HOM05D002350 ORTHO05D000091 3.5e-17 92.4 82 54.9
Thecc.09G101800 Theobroma cacao HOM05D002350 ORTHO05D000091 3.5e-17 92.4 79 55.7
EL10Ac8g18396 Beta vulgaris HOM05D002350 ORTHO05D000091 4.5e-17 92.0 79 55.7
Eucgr.K00104 Eucalyptus grandis HOM05D002350 ORTHO05D000091 4.5e-17 92.0 79 58.2
RcHm_v2.0_Chr2g0091711 Rosa chinensis HOM05D002350 ORTHO05D000091 5.9e-17 91.7 79 58.2
Sc08g0007950 Simmondsia chinensis HOM05D002350 ORTHO05D000091 7.7e-17 91.3 78 61.5
Cfa021160 Carpinus fangiana HOM05D013114 ORTHO05D024861 1.0e-16 90.9 48 91.7
Lalb_Chr14g0371831 Lupinus albus HOM05D002350 ORTHO05D000091 1.0e-16 90.9 79 55.7
arahy.Tifrunner.gnm1.ann1.2RFB5Y Arachis hypogaea HOM05D002350 ORTHO05D000091 1.3e-16 90.5 78 55.1
arahy.Tifrunner.gnm1.ann1.7X0VYH Arachis hypogaea HOM05D002350 ORTHO05D000091 1.3e-16 90.5 78 55.1
Ciclev10007331m.g Citrus clementina HOM05D002350 ORTHO05D000091 1.3e-16 90.5 79 58.2
BcaC06g36656 Brassica carinata HOM05D002350 ORTHO05D000091 2.9e-16 89.4 79 58.2
C07p01760 Brassica napus HOM05D002350 ORTHO05D000091 2.9e-16 89.4 79 58.2
BolC7t40580H Brassica oleracea HOM05D002350 ORTHO05D000091 2.9e-16 89.4 79 58.2
Atru.chr7.1447 Acer truncatum HOM05D002350 ORTHO05D000091 3.8e-16 89.0 82 53.7
AT2G19930 Arabidopsis thaliana HOM05D002350 ORTHO05D000091 3.8e-16 89.0 80 53.8
Gohir.D07G008700 Gossypium hirsutum HOM05D002350 ORTHO05D000091 3.8e-16 89.0 79 55.7
CANSAT56G1437 Cannabis sativa HOM05D002350 ORTHO05D000091 5.0e-16 88.6 79 53.2
Eucgr.L00426 Eucalyptus grandis HOM05D002350 ORTHO05D000091 5.0e-16 88.6 73 61.6
PSO210G2001 Papaver somniferum HOM05D002350 ORTHO05D000091 5.0e-16 88.6 124 41.1
Gohir.A07G008300 Gossypium hirsutum HOM05D002350 ORTHO05D000091 6.5e-16 88.2 79 57.0
MD15G1195400 Malus domestica HOM05D002350 ORTHO05D000091 6.5e-16 88.2 79 58.2
BcaB08g34892 Brassica carinata HOM05D002350 ORTHO05D000091 1.1e-15 87.4 79 57.0
BcaC07g41231 Brassica carinata HOM05D002350 ORTHO05D000091 1.1e-15 87.4 79 57.0
C08p42360 Brassica napus HOM05D002350 ORTHO05D000091 1.1e-15 87.4 79 57.0
BolC8t51798H Brassica oleracea HOM05D002350 ORTHO05D000091 1.1e-15 87.4 79 57.0
Eucgr.F00073 Eucalyptus grandis HOM05D002350 ORTHO05D000091 1.1e-15 87.4 73 58.9
Psat1g046880 Pisum sativum HOM05D002350 ORTHO05D000091 1.1e-15 87.4 79 51.9
arahy.Tifrunner.gnm1.ann1.HAD3B9 Arachis hypogaea HOM05D002350 ORTHO05D000091 1.5e-15 87.0 78 52.6
vmacro06244 Vaccinium macrocarpon HOM05D002350 ORTHO05D000091 1.5e-15 87.0 89 48.3
Migut.N01382 Erythranthe guttata HOM05D002350 ORTHO05D000091 1.9e-15 86.7 81 53.1
Oeu064190.1 Olea europaea HOM05D002350 ORTHO05D000091 1.9e-15 86.7 79 55.7
PSO210G7085 Papaver somniferum HOM05D002350 ORTHO05D000091 1.9e-15 86.7 79 53.2
Hund26256 Selenicereus undatus HOM05D002350 ORTHO05D000091 1.9e-15 86.7 79 57.0
THA.LOC104808318 Tarenaya hassleriana HOM05D002350 ORTHO05D000091 1.9e-15 86.7 79 55.7
Aqoxy7G03876 Aquilegia oxysepala HOM05D002350 ORTHO05D000091 2.5e-15 86.3 80 56.2
C07p01730 Brassica napus HOM05D002350 ORTHO05D000091 2.5e-15 86.3 79 55.7
Eucgr.C02534 Eucalyptus grandis HOM05D000393 ORTHO05D000275 2.5e-15 86.3 72 59.7
AL3G48270 Arabidopsis lyrata HOM05D002350 ORTHO05D000091 3.2e-15 85.9 80 51.2
BraA07t27871Z Brassica rapa HOM05D002350 ORTHO05D000091 4.2e-15 85.5 79 55.7
CSS0040795 Camellia sinensis var. sinensis HOM05D002350 ORTHO05D000091 4.2e-15 85.5 108 46.3
CSS0048273 Camellia sinensis var. sinensis HOM05D002350 ORTHO05D000091 4.2e-15 85.5 108 46.3
Thhalv10001896m.g Eutrema salsugineum HOM05D002350 ORTHO05D000091 4.2e-15 85.5 90 47.8
BcaB03g16778 Brassica carinata HOM05D002350 ORTHO05D000091 5.5e-15 85.1 79 53.2
AUR62010903 Chenopodium quinoa HOM05D002350 ORTHO05D000091 5.5e-15 85.1 90 47.8
BcaC06g36662 Brassica carinata HOM05D002350 ORTHO05D000091 7.2e-15 84.7 79 53.2
BolC7t40573H Brassica oleracea HOM05D002350 ORTHO05D000091 7.2e-15 84.7 79 53.2
Migut.K00531 Erythranthe guttata HOM05D002350 ORTHO05D000091 7.2e-15 84.7 79 53.2
HanXRQChr16g0507611 Helianthus annuus HOM05D002350 ORTHO05D000091 7.2e-15 84.7 78 57.7
Lj2g0003052 Lotus japonicus HOM05D002350 ORTHO05D000091 7.2e-15 84.7 79 50.6
arahy.Tifrunner.gnm1.ann1.9LQV7C Arachis hypogaea HOM05D002350 ORTHO05D000091 9.4e-15 84.3 78 51.3
Oeu064188.1 Olea europaea HOM05D002350 ORTHO05D000091 9.4e-15 84.3 80 53.8
Eucgr.K01068 Eucalyptus grandis HOM05D000708 ORTHO05D003167 1.2e-14 84.0 73 58.9
Actinidia32657 Actinidia chinensis HOM05D002350 ORTHO05D000091 1.6e-14 83.6 82 52.4
BcaB03g16779 Brassica carinata HOM05D002350 ORTHO05D000091 1.6e-14 83.6 79 53.2
BcaC06g36654 Brassica carinata HOM05D002350 ORTHO05D000091 1.6e-14 83.6 79 54.4
A07p00720 Brassica napus HOM05D002350 ORTHO05D000091 1.6e-14 83.6 79 53.2
BolC7t40582H Brassica oleracea HOM05D002350 ORTHO05D000091 1.6e-14 83.6 79 54.4
Cfa002317 Carpinus fangiana HOM05D013114 ORTHO05D024861 1.6e-14 83.6 48 83.3
AUR62021424 Chenopodium quinoa HOM05D002350 ORTHO05D000091 1.6e-14 83.6 79 51.9
Medtr6g088660 Medicago truncatula HOM05D002350 ORTHO05D000091 1.6e-14 83.6 82 50.0
Nitab4.5_0000566g0160 Nicotiana tabacum HOM05D002350 ORTHO05D000091 1.6e-14 83.6 82 52.4
Nitab4.5_0011131g0010 Nicotiana tabacum HOM05D002350 ORTHO05D000091 1.6e-14 83.6 82 52.4
Rhsim03G0237500 Rhododendron simsii HOM05D002350 ORTHO05D000091 1.6e-14 83.6 81 51.9
Sp3g33240 Schrenkiella parvula HOM05D002350 ORTHO05D000091 1.6e-14 83.6 79 53.2
A07p00780 Brassica napus HOM05D002350 ORTHO05D000091 2.1e-14 83.2 79 53.2
A09p59080 Brassica napus HOM05D002350 ORTHO05D000091 2.1e-14 83.2 79 54.4
C07p01790 Brassica napus HOM05D002350 ORTHO05D000091 2.1e-14 83.2 79 53.2
BraA07t27876Z Brassica rapa HOM05D002350 ORTHO05D000091 2.1e-14 83.2 79 53.2
BraA09t41291Z Brassica rapa HOM05D002350 ORTHO05D000091 2.1e-14 83.2 79 54.4
Thhalv10001897m.g Eutrema salsugineum HOM05D002350 ORTHO05D000091 2.1e-14 83.2 90 48.9
Aa31LG8G16870 Aethionema arabicum HOM05D002350 ORTHO05D000091 2.7e-14 82.8 79 53.2
A07p00750 Brassica napus HOM05D002350 ORTHO05D000091 2.7e-14 82.8 79 53.2
BraA07t27873Z Brassica rapa HOM05D002350 ORTHO05D000091 2.7e-14 82.8 79 53.2
Glyma.01G008700 Glycine max HOM05D002350 ORTHO05D000091 2.7e-14 82.8 79 50.6
RcHm_v2.0_Chr2g0091681 Rosa chinensis HOM05D002350 ORTHO05D000091 4.7e-14 82.0 79 54.4
AL3G48290 Arabidopsis lyrata HOM05D002350 ORTHO05D000091 6.1e-14 81.6 78 55.1
AT2G19910 Arabidopsis thaliana HOM05D002350 ORTHO05D000091 6.1e-14 81.6 78 51.3
FvH4_1g05990 Fragaria vesca HOM05D002350 ORTHO05D000091 6.1e-14 81.6 79 54.4
FAN19G2534 Fragaria x ananassa HOM05D002350 ORTHO05D000091 6.1e-14 81.6 79 54.4
Carub.0003s3418 Capsella rubella HOM05D002350 ORTHO05D000091 8.0e-14 81.3 80 52.5
RcHm_v2.0_Chr5g0014401 Rosa chinensis HOM05D002350 ORTHO05D000091 8.0e-14 81.3 78 56.4
Solyc06g051190.3 Solanum lycopersicum HOM05D002350 ORTHO05D000091 8.0e-14 81.3 80 48.8
Lj4C391G5 Lonicera japonica HOM05D002350 ORTHO05D000091 1.0e-13 80.9 79 53.2
AT2G19920 Arabidopsis thaliana HOM05D002350 ORTHO05D000091 1.4e-13 80.5 78 53.8
Cfa012814 Carpinus fangiana HOM05D013114 ORTHO05D123824 1.4e-13 80.5 69 62.3
Prupe.7G221200 Prunus persica HOM05D002350 ORTHO05D000091 1.4e-13 80.5 78 53.8
ECA236G2339 Erigeron canadensis HOM05D002350 ORTHO05D000091 1.8e-13 80.1 78 52.6
Lsat_1_v5_gn_8_96860 Lactuca sativa HOM05D002350 ORTHO05D000091 1.8e-13 80.1 78 52.6
MD02G1064400 Malus domestica HOM05D002350 ORTHO05D000091 1.8e-13 80.1 78 51.3
Nitab4.5_0000165g0030 Nicotiana tabacum HOM05D002350 ORTHO05D000091 1.8e-13 80.1 80 48.8
Sopen12g003370 Solanum pennellii HOM05D002350 ORTHO05D000091 1.8e-13 80.1 82 51.2
PGSC0003DMG401000361 Solanum tuberosum HOM05D002350 ORTHO05D000091 1.8e-13 80.1 82 51.2
RcHm_v2.0_Chr2g0091731 Rosa chinensis HOM05D002350 ORTHO05D000091 2.3e-13 79.7 78 55.1
A10p17220 Brassica napus HOM05D002350 ORTHO05D000091 3.0e-13 79.3 80 53.8
Nitab4.5_0001354g0020 Nicotiana tabacum HOM05D002350 ORTHO05D000091 3.0e-13 79.3 80 47.5
Solyc12g008420.3 Solanum lycopersicum HOM05D002350 ORTHO05D000091 3.0e-13 79.3 79 51.9
Carub.0003s3417 Capsella rubella HOM05D002350 ORTHO05D000091 4.0e-13 79.0 79 50.6
Sopen06g017040 Solanum pennellii HOM05D002350 ORTHO05D000091 4.0e-13 79.0 80 48.8
AL3G48310 Arabidopsis lyrata HOM05D002350 ORTHO05D000091 5.2e-13 78.6 78 50.0
Lj4C392G1 Lonicera japonica HOM05D002350 ORTHO05D000091 5.2e-13 78.6 79 50.6
BraA10t43806Z Brassica rapa HOM05D002350 ORTHO05D000091 6.7e-13 78.2 80 52.5
DCAR_010692 Daucus carota HOM05D002350 ORTHO05D000091 6.7e-13 78.2 79 48.1
Cfa021018 Carpinus fangiana HOM05D013114 ORTHO05D024861 8.8e-13 77.8 40 92.5
HanXRQChr16g0503801 Helianthus annuus HOM05D002350 ORTHO05D000091 8.8e-13 77.8 85 50.6
Aqoxy6G02290 Aquilegia oxysepala HOM05D002350 ORTHO05D000091 1.2e-12 77.4 80 51.2
ATR0705G139 Amborella trichopoda HOM05D002350 ORTHO05D000091 2.0e-12 76.6 79 50.6
TPR.G21372 Trifolium pratense HOM05D002350 ORTHO05D000091 2.0e-12 76.6 87 46.0
Rhsim03G0238400 Rhododendron simsii HOM05D002350 ORTHO05D000091 2.6e-12 76.3 125 38.4
Cfa014932 Carpinus fangiana HOM05D013114 ORTHO05D126419 3.3e-12 75.9 48 77.1
CAN.G1642.9 Capsicum annuum HOM05D002350 ORTHO05D000091 4.4e-12 75.5 82 50.0
AUR62010902 Chenopodium quinoa HOM05D002350 ORTHO05D000091 7.5e-12 74.7 90 47.8
AUR62042309 Chenopodium quinoa HOM05D002350 ORTHO05D000091 7.5e-12 74.7 82 50.0
Cc06_g10360 Coffea canephora HOM05D002350 ORTHO05D000091 7.5e-12 74.7 78 46.2
PSO832G0190 Papaver somniferum HOM05D002350 ORTHO05D000091 7.5e-12 74.7 80 50.0
Ah.14g083290 Amaranthus hybridus HOM05D002350 ORTHO05D000091 9.7e-12 74.3 79 49.4
CARHR110370 Cardamine hirsuta HOM05D002350 ORTHO05D000091 9.7e-12 74.3 78 51.3
QL02p042039 Quercus lobata HOM05D002350 ORTHO05D000091 9.7e-12 74.3 48 72.9
AUR62021426 Chenopodium quinoa HOM05D002350 ORTHO05D000091 1.7e-11 73.6 78 50.0
Phvul.004G176400 Phaseolus vulgaris HOM05D002350 ORTHO05D000091 1.7e-11 73.6 79 50.6
VMungo0464G0493 Vigna mungo HOM05D002350 ORTHO05D000091 1.7e-11 73.6 79 50.6
SalBow5G3880 Salvia bowleyana HOM05D002350 ORTHO05D000091 2.8e-11 72.8 88 43.2
DCAR_018431 Daucus carota HOM05D002350 ORTHO05D000091 6.3e-11 71.6 79 44.3
MSTRG.10607 Avicennia marina HOM05D002350 ORTHO05D000091 1.1e-10 70.9 79 45.6
HanXRQChr16g0503771 Helianthus annuus HOM05D002350 ORTHO05D000091 1.4e-10 70.5 79 46.8
Lsat_1_v5_gn_5_144600 Lactuca sativa HOM05D002350 ORTHO05D000091 1.4e-10 70.5 79 48.1
Cfa007527 Carpinus fangiana HOM05D013114 ORTHO05D024861 3.1e-10 69.3 48 75.0
COL.COLO4_34763 Corchorus olitorius HOM05D002350 ORTHO05D000091 4.1e-10 68.9 105 37.1
EL10Ac8g18397 Beta vulgaris HOM05D002350 ORTHO05D000091 1.2e-09 67.4 79 48.1
Cc06_g10350 Coffea canephora HOM05D002350 ORTHO05D000091 1.6e-09 67.0 78 44.9
Lj7C663T4 Lonicera japonica HOM05D002350 ORTHO05D000091 2.7e-09 66.2 49 61.2
AUR62021425 Chenopodium quinoa HOM05D002350 ORTHO05D000091 5.9e-09 65.1 80 46.2
Dinv41662 Davidia involucrata HOM05D002350 ORTHO05D000091 1.7e-08 63.5 100 40.0
ECA234G0874 Erigeron canadensis HOM05D002350 ORTHO05D000091 1.7e-08 63.5 79 43.0
SMO146G0176 Selaginella moellendorffii HOM05D002350 ORTHO05D000091 8.5e-08 61.2 75 46.7
BcaB03g16780 Brassica carinata HOM05D002350 ORTHO05D000091 3.2e-07 59.3 79 43.0
AagrBONN_evm.TU.Sc2ySwM_117.903 Anthoceros agrestis HOM05D002350 ORTHO05D000091 4.2e-07 58.9 74 43.2
CANSAT56G4254 Cannabis sativa HOM05D002350 ORTHO05D000091 7.2e-07 58.2 79 40.5
Peaxi162Scf00665g00310 Petunia axillaris HOM05D002350 ORTHO05D000091 1.2e-06 57.4 54 57.4
Cfa017752 Carpinus fangiana HOM05D013114 ORTHO05D125161 2.1e-06 56.6 29 89.7
Os01g0198000 Oryza sativa ssp. japonica HOM05D002350 ORTHO05D000091 2.7e-06 56.2 101 33.7
MBI04_g17295_MAGBIO Magnolia biondii HOM05D002350 ORTHO05D000091 8.0e-06 54.7 49 49.0


User provided reference genes

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