Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017868 Carpinus fangiana HOM05D007692 ORTHO05D009696 8.4e-55 216.9 115 100.0
Haze_18297 Corylus avellana HOM05D007692 ORTHO05D009696 1.3e-47 193.0 115 92.2
QL02p017055 Quercus lobata HOM05D007692 ORTHO05D009696 2.4e-33 145.6 117 69.2
MD15G1049600 Malus domestica HOM05D007692 ORTHO05D009696 1.2e-32 143.3 118 64.4
QL02p017043 Quercus lobata HOM05D007692 ORTHO05D009696 1.2e-32 143.3 117 68.4
CiPaw.15G091700 Carya illinoinensis HOM05D007692 ORTHO05D009696 4.5e-32 141.4 119 68.1
Prupe.1G403900 Prunus persica HOM05D007692 ORTHO05D009696 1.7e-31 139.4 110 69.1
RcHm_v2.0_Chr6g0311901 Rosa chinensis HOM05D007692 ORTHO05D009696 2.9e-31 138.7 114 69.3
FvH4_2g30960 Fragaria vesca HOM05D007692 ORTHO05D009696 4.9e-31 137.9 114 67.5
MD08G1071600 Malus domestica HOM05D007692 ORTHO05D009696 8.4e-31 137.1 116 62.9
Nn2g12400 Nelumbo nucifera HOM05D007692 ORTHO05D009696 1.6e-29 132.9 111 64.9
Duzib168G1711 Durio zibethinus HOM05D007692 ORTHO05D009696 6.0e-29 131.0 101 71.3
Thecc.09G063700 Theobroma cacao HOM05D007692 ORTHO05D009696 7.9e-29 130.6 99 71.7
TAR624G0897 Trochodendron aralioides HOM05D007692 ORTHO05D009696 1.1e-27 126.7 108 64.8
COL.COLO4_21142 Corchorus olitorius HOM05D007692 ORTHO05D009696 5.7e-27 124.4 99 66.7
Potri.006G220500 Populus trichocarpa HOM05D007692 ORTHO05D009696 1.3e-26 123.2 108 64.8
Hma1.2p1_0278F.1_g111850 Hydrangea macrophylla HOM05D007692 ORTHO05D009696 2.1e-26 122.5 100 68.0
Sabra06G0170400 Salix brachista HOM05D007692 ORTHO05D009696 2.1e-26 122.5 108 63.9
Manes.16G085800 Manihot esculenta HOM05D007692 ORTHO05D009696 1.5e-24 116.3 103 65.0
Dinv22937 Davidia involucrata HOM05D007692 ORTHO05D009696 5.9e-24 114.4 115 60.0
Gohir.D05G040100 Gossypium hirsutum HOM05D007692 ORTHO05D009696 1.0e-23 113.6 99 63.6
Gorai.009G040500 Gossypium raimondii HOM05D007692 ORTHO05D009696 1.0e-23 113.6 99 63.6
Lj5g0021751 Lotus japonicus HOM05D007692 ORTHO05D009696 2.2e-23 112.5 102 59.8
Cpa.g.sc126.21 Carica papaya HOM05D007692 ORTHO05D009696 6.5e-23 110.9 112 60.7
Nitab4.5_0008422g0010 Nicotiana tabacum HOM05D007692 ORTHO05D009696 6.5e-23 110.9 101 62.4
Nn8g39911 Nelumbo nucifera HOM05D007692 ORTHO05D009696 8.4e-23 110.5 107 61.7
Solyc08g061640.1 Solanum lycopersicum HOM05D007692 ORTHO05D009696 1.1e-22 110.2 101 62.4
Sopen08g017100 Solanum pennellii HOM05D007692 ORTHO05D009696 1.1e-22 110.2 101 62.4
PGSC0003DMG400045083 Solanum tuberosum HOM05D007692 ORTHO05D009696 1.1e-22 110.2 101 62.4
CAN.G567.82 Capsicum annuum HOM05D007692 ORTHO05D009696 1.9e-22 109.4 101 60.4
Gohir.A05G038600 Gossypium hirsutum HOM05D007692 ORTHO05D009696 1.9e-22 109.4 99 61.6
TPR.G38893 Trifolium pratense HOM05D007692 ORTHO05D009696 2.5e-22 109.0 102 56.9
Peaxi162Scf00486g00102 Petunia axillaris HOM05D007692 ORTHO05D009696 7.2e-22 107.5 100 62.0
CANSAT25G1329 Cannabis sativa HOM05D007692 ORTHO05D009696 9.3e-22 107.1 111 58.6
DCAR_001232 Daucus carota HOM05D006390 ORTHO05D007899 9.3e-22 107.1 108 59.3
Psat6g022960 Pisum sativum HOM05D007692 ORTHO05D009696 9.3e-22 107.1 102 56.9
Medtr1g015470 Medicago truncatula HOM05D007692 ORTHO05D009696 1.2e-21 106.7 102 56.9
MELO3C016914.2 Cucumis melo HOM05D007692 ORTHO05D009696 1.6e-21 106.3 109 55.0
CsaV3_4G036060 Cucumis sativus L. HOM05D007692 ORTHO05D009696 1.6e-21 106.3 109 55.0
ClCG05G015760 Citrullus lanatus HOM05D007692 ORTHO05D009696 2.1e-21 105.9 118 52.5
Glyma.17G225900 Glycine max HOM05D007692 ORTHO05D009696 2.7e-21 105.5 102 59.8
Nitab4.5_0000446g0120 Nicotiana tabacum HOM05D007692 ORTHO05D009696 2.7e-21 105.5 101 59.4
VMungo1309G1304 Vigna mungo HOM05D007692 ORTHO05D009696 6.1e-21 104.4 102 58.8
Sed0007061 Sechium edule HOM05D007692 ORTHO05D009696 1.0e-20 103.6 114 51.8
EL10Ac2g03778 Beta vulgaris HOM05D007692 ORTHO05D009696 1.3e-20 103.2 106 57.5
VMungo0647G2522 Vigna mungo HOM05D007692 ORTHO05D009696 3.0e-20 102.1 102 59.8
MBI13_g42817_MAGBIO Magnolia biondii HOM05D007692 ORTHO05D009696 3.9e-20 101.7 103 58.3
THA.LOC104810956 Tarenaya hassleriana HOM05D007692 ORTHO05D009696 6.7e-20 100.9 102 52.0
Ciclev10010178m.g Citrus clementina HOM05D007692 ORTHO05D009696 8.7e-20 100.5 102 59.8
arahy.Tifrunner.gnm1.ann1.0E4SK3 Arachis hypogaea HOM05D007692 ORTHO05D009696 1.1e-19 100.1 102 59.8
TWI63G1278 Tripterygium wilfordii HOM05D007692 ORTHO05D009696 1.1e-19 100.1 102 58.8
Glyma.06G056100 Glycine max HOM05D007692 ORTHO05D009696 1.9e-19 99.4 103 59.2
CSS0041722 Camellia sinensis var. sinensis HOM05D007692 ORTHO05D009696 2.5e-19 99.0 89 62.9
Phvul.009G082200 Phaseolus vulgaris HOM05D007692 ORTHO05D009696 3.3e-19 98.6 102 53.9
PGR031G0311 Punica granatum HOM05D007692 ORTHO05D009696 4.3e-19 98.2 96 63.5
SalBow4G0926 Salvia bowleyana HOM05D007692 ORTHO05D009696 4.3e-19 98.2 107 52.3
Aqoxy2G03896 Aquilegia oxysepala HOM05D007692 ORTHO05D009696 2.2e-18 95.9 103 56.3
PSO541G2080 Papaver somniferum HOM05D007692 ORTHO05D009696 2.2e-18 95.9 100 55.0
Ah.11g044290 Amaranthus hybridus HOM05D007692 ORTHO05D009696 2.8e-18 95.5 98 57.1
TPR.G3568 Trifolium pratense HOM05D007692 ORTHO05D009696 2.8e-18 95.5 114 52.6
Eucgr.C00729 Eucalyptus grandis HOM05D007692 ORTHO05D009696 3.7e-18 95.1 100 54.0
PSO675G1902 Papaver somniferum HOM05D007692 ORTHO05D009696 6.3e-18 94.4 100 55.0
Lsat_1_v5_gn_7_58320 Lactuca sativa HOM05D006390 ORTHO05D007899 8.2e-18 94.0 101 50.5
Sc06g0001120 Simmondsia chinensis HOM05D007692 ORTHO05D009696 6.9e-17 90.9 96 58.3
A10p18810 Brassica napus HOM05D007692 ORTHO05D009696 9.0e-17 90.5 108 48.1
BraA10t43961Z Brassica rapa HOM05D007692 ORTHO05D009696 9.0e-17 90.5 108 48.1
ECA240G2866 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.5e-16 89.7 99 53.5
SGA_v2.0_scaffold20G09157 Striga asiatica HOM05D006390 ORTHO05D007899 1.5e-16 89.7 102 47.1
Medtr3g105090 Medicago truncatula HOM05D007692 ORTHO05D009696 3.4e-16 88.6 100 50.0
Zm00001eb005780 Zea mays HOM05D007692 ORTHO05D009696 3.4e-16 88.6 104 51.9
HanXRQChr03g0065641 Helianthus annuus HOM05D007692 ORTHO05D009696 4.5e-16 88.2 106 48.1
Oeu003971.1 Olea europaea HOM05D007692 ORTHO05D009696 4.5e-16 88.2 103 52.4
C09p54830 Brassica napus HOM05D007692 ORTHO05D009696 7.7e-16 87.4 101 49.5
BolC9t58343H Brassica oleracea HOM05D007692 ORTHO05D009696 7.7e-16 87.4 101 49.5
HPP92_004156 Vanilla planifolia HOM05D007692 ORTHO05D009696 7.7e-16 87.4 100 50.0
BcaB08g36470 Brassica carinata HOM05D007692 ORTHO05D009696 1.0e-15 87.0 108 48.1
Thhalv10015977m.g Eutrema salsugineum HOM05D007692 ORTHO05D009696 1.7e-15 86.3 101 47.5
Phvul.001G038600 Phaseolus vulgaris HOM05D007692 ORTHO05D009696 1.7e-15 86.3 86 59.3
CARHR191630 Cardamine hirsuta HOM05D007692 ORTHO05D009696 3.8e-15 85.1 94 50.0
Psat5g030520 Pisum sativum HOM05D007692 ORTHO05D009696 6.5e-15 84.3 84 58.3
unitig_32.g11527 Utricularia gibba HOM05D007692 ORTHO05D009696 1.4e-14 83.2 103 47.6
ATR0598G206 Amborella trichopoda HOM05D007692 ORTHO05D009696 5.5e-14 81.3 104 47.1
CDE04G2134 Ceratophyllum demersum HOM05D007692 ORTHO05D009696 7.2e-14 80.9 106 48.1
Medtr1g015490 Medicago truncatula HOM05D007692 ORTHO05D009696 2.1e-13 79.3 90 48.9
Lalb_Chr11g0063341 Lupinus albus HOM05D007692 ORTHO05D009696 2.7e-13 79.0 102 49.0
Os03g0176900 Oryza sativa ssp. japonica HOM05D007692 ORTHO05D009696 3.6e-13 78.6 104 48.1
Atru.chr7.1844 Acer truncatum HOM05D007692 ORTHO05D009696 2.0e-11 72.8 75 60.0
Sp6g23280 Schrenkiella parvula HOM05D007692 ORTHO05D009696 3.3e-11 72.0 95 42.1
AT5G21910 Arabidopsis thaliana HOM05D007692 ORTHO05D009696 9.7e-11 70.5 101 43.6
Carub.0006s1955 Capsella rubella HOM05D007692 ORTHO05D009696 3.7e-10 68.6 101 42.6
Cc08_g01120 Coffea canephora HOM05D007692 ORTHO05D009696 6.3e-10 67.8 113 45.1
Lj1g0020593 Lotus japonicus HOM05D007692 ORTHO05D009696 1.4e-09 66.6 113 44.2
Lalb_Chr14g0366461 Lupinus albus HOM05D007692 ORTHO05D009696 1.8e-09 66.2 78 53.8
TAR624G1426 Trochodendron aralioides HOM05D000001 ORTHO05D000003 1.8e-09 66.2 65 60.0
Duzib150G0238 Durio zibethinus HOM05D007692 ORTHO05D009696 5.3e-09 64.7 140 37.9
Psat6g004480 Pisum sativum HOM05D007692 ORTHO05D009696 1.2e-08 63.5 71 53.5
Carub.0005s0963 Capsella rubella HOM05D007692 ORTHO05D009696 1.1e-06 57.0 107 34.6
BcaB01g04756 Brassica carinata HOM05D007692 ORTHO05D009696 5.5e-06 54.7 43 53.5


User provided reference genes

Program Settings