Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017861 Carpinus fangiana HOM05D006487 ORTHO05D007982 7.1e-229 797.0 416 100.0
Haze_18332 Corylus avellana HOM05D006487 ORTHO05D007982 1.7e-129 466.8 312 80.8
QL10p034099 Quercus lobata HOM05D006487 ORTHO05D007982 1.8e-102 377.1 291 73.2
CiPaw.16G073400 Carya illinoinensis HOM05D006487 ORTHO05D007982 5.3e-99 365.5 280 70.0
RcHm_v2.0_Chr7g0177071 Rosa chinensis HOM05D006487 ORTHO05D007982 6.0e-87 325.5 334 54.8
Dinv03426 Davidia involucrata HOM05D006487 ORTHO05D007982 7.2e-80 302.0 332 52.4
FvH4_5g18410 Fragaria vesca HOM05D006487 ORTHO05D007982 2.1e-79 300.4 327 53.5
Hma1.2p1_0989F.1_g244820 Hydrangea macrophylla HOM05D006487 ORTHO05D007982 2.7e-79 300.1 374 48.9
Prupe.5G243800 Prunus persica HOM05D006487 ORTHO05D007982 1.8e-78 297.4 327 52.3
Actinidia34682 Actinidia chinensis HOM05D006487 ORTHO05D007982 5.7e-77 292.4 286 55.2
TWI81G0553 Tripterygium wilfordii HOM05D006487 ORTHO05D007982 1.3e-73 281.2 281 54.8
TAR629G0717 Trochodendron aralioides HOM05D006487 ORTHO05D007982 1.4e-72 277.7 364 48.1
Thecc.05G197400 Theobroma cacao HOM05D006487 ORTHO05D007982 1.2e-71 274.6 316 51.3
Phvul.004G139000 Phaseolus vulgaris HOM05D006487 ORTHO05D007982 7.9e-71 271.9 279 57.7
CANSAT64G1132 Cannabis sativa HOM05D006487 ORTHO05D007982 3.9e-70 269.6 330 50.3
Manes.02G218400 Manihot esculenta HOM05D006487 ORTHO05D007982 6.7e-70 268.9 281 55.5
Glyma.09G164600 Glycine max HOM05D006487 ORTHO05D007982 2.8e-68 263.5 306 52.9
Lalb_Chr22g0353991 Lupinus albus HOM05D006487 ORTHO05D007982 2.4e-67 260.4 279 57.3
FAN13G0937 Fragaria x ananassa HOM05D006487 ORTHO05D007982 6.9e-67 258.8 330 48.2
arahy.Tifrunner.gnm1.ann1.FG107U Arachis hypogaea HOM05D006487 ORTHO05D007982 3.4e-66 256.5 280 54.6
Ciclev10020398m.g Citrus clementina HOM05D006487 ORTHO05D007982 1.0e-65 255.0 316 47.8
Potri.004G069400 Populus trichocarpa HOM05D006487 ORTHO05D007982 1.0e-65 255.0 287 52.6
arahy.Tifrunner.gnm1.ann1.49K0I5 Arachis hypogaea HOM05D006487 ORTHO05D007982 1.7e-65 254.2 280 54.6
Sed0005317 Sechium edule HOM05D006487 ORTHO05D007982 2.2e-65 253.8 280 52.5
Gohir.A08G225300 Gossypium hirsutum HOM05D006487 ORTHO05D007982 2.9e-65 253.4 310 49.7
MD14G1245900 Malus domestica HOM05D006487 ORTHO05D007982 1.9e-64 250.8 294 49.3
Glyma.16G213000 Glycine max HOM05D006487 ORTHO05D007982 4.2e-64 249.6 257 58.0
Lj2g0009690 Lotus japonicus HOM05D006487 ORTHO05D007982 5.5e-64 249.2 307 53.1
Ca_11836_v3 Cicer arietinum L. HOM05D006487 ORTHO05D007982 2.7e-63 246.9 285 53.3
Gorai.004G262200 Gossypium raimondii HOM05D006487 ORTHO05D007982 6.1e-63 245.7 279 50.5
Medtr6g077860 Medicago truncatula HOM05D006487 ORTHO05D007982 2.3e-62 243.8 288 52.1
Gohir.D08G245700 Gossypium hirsutum HOM05D006487 ORTHO05D007982 3.9e-62 243.0 266 51.9
Psat1g121120 Pisum sativum HOM05D006487 ORTHO05D007982 6.7e-62 242.3 306 49.0
Hma1.2p1_0989F.1_g244830 Hydrangea macrophylla HOM05D006487 ORTHO05D007982 1.1e-61 241.5 174 67.8
VMungo0464G1082 Vigna mungo HOM05D006487 ORTHO05D007982 2.6e-61 240.4 266 53.0
TPR.G19888 Trifolium pratense HOM05D006487 ORTHO05D007982 4.4e-61 239.6 281 52.3
Nn4g25081 Nelumbo nucifera HOM05D006487 ORTHO05D007982 1.4e-59 234.6 287 48.4
CsaV3_1G007510 Cucumis sativus L. HOM05D006487 ORTHO05D007982 4.1e-59 233.0 315 46.3
FAN08G3399 Fragaria x ananassa HOM05D006487 ORTHO05D007982 7.0e-59 232.3 339 44.0
MELO3C002168.2 Cucumis melo HOM05D006487 ORTHO05D007982 1.2e-58 231.5 318 45.6
Oeu023551.1 Olea europaea HOM05D006487 ORTHO05D007982 1.2e-58 231.5 303 48.5
PGR083G2465 Punica granatum HOM05D006487 ORTHO05D007982 3.5e-58 229.9 309 44.0
COL.COLO4_24904 Corchorus olitorius HOM05D006487 ORTHO05D007982 2.5e-56 223.8 305 45.2
Rhsim08G0124800 Rhododendron simsii HOM05D006487 ORTHO05D007982 3.2e-56 223.4 414 38.2
DCAR_011682 Daucus carota HOM05D006487 ORTHO05D007982 7.2e-56 222.2 312 45.5
FAN18G0592 Fragaria x ananassa HOM05D006487 ORTHO05D007982 9.4e-56 221.9 257 50.6
Nitab4.5_0003040g0090 Nicotiana tabacum HOM05D006487 ORTHO05D007982 3.6e-55 219.9 275 47.6
GSVIVG01027119001 Vitis vinifera HOM05D006487 ORTHO05D007982 3.6e-55 219.9 268 48.9
Migut.O00267 Erythranthe guttata HOM05D006487 ORTHO05D007982 6.7e-54 215.7 346 40.8
CAN.G929.21 Capsicum annuum HOM05D006487 ORTHO05D007982 1.2e-53 214.9 265 48.7
MBI06_g27513_MAGBIO Magnolia biondii HOM05D006487 ORTHO05D007982 2.0e-53 214.2 287 46.3
Nitab4.5_0000782g0060 Nicotiana tabacum HOM05D006487 ORTHO05D007982 7.5e-53 212.2 280 47.1
Peaxi162Scf00171g00242 Petunia axillaris HOM05D006487 ORTHO05D007982 3.7e-52 209.9 268 47.0
Solyc03g098620.3 Solanum lycopersicum HOM05D006487 ORTHO05D007982 5.3e-51 206.1 280 44.6
PGSC0003DMG400010175 Solanum tuberosum HOM05D006487 ORTHO05D007982 1.6e-50 204.5 280 43.9
Sopen03g029330 Solanum pennellii HOM05D006487 ORTHO05D007982 3.5e-50 203.4 280 43.6
Lsat_1_v5_gn_0_10541 Lactuca sativa HOM05D006487 ORTHO05D007982 5.9e-50 202.6 255 47.1
PSO782G2052 Papaver somniferum HOM05D006487 ORTHO05D007982 5.9e-50 202.6 298 45.3
Thhalv10011620m.g Eutrema salsugineum HOM05D006487 ORTHO05D007982 1.3e-49 201.4 268 45.9
Sabra04G0046600 Salix brachista HOM05D006487 ORTHO05D007982 1.7e-49 201.1 322 42.2
SalBow5G2999 Salvia bowleyana HOM05D006487 ORTHO05D007982 1.7e-49 201.1 258 46.9
PSO063G4419 Papaver somniferum HOM05D006487 ORTHO05D007982 3.8e-49 199.9 290 44.8
SGA_v2.0_scaffold90G27746 Striga asiatica HOM05D006487 ORTHO05D007982 6.5e-49 199.1 256 45.7
Sp1g35330 Schrenkiella parvula HOM05D006487 ORTHO05D007982 1.5e-48 198.0 267 44.6
Aqoxy3G04297 Aquilegia oxysepala HOM05D006487 ORTHO05D007982 1.6e-47 194.5 258 45.7
AL1G54980 Arabidopsis lyrata HOM05D006487 ORTHO05D007982 1.6e-47 194.5 267 44.6
HanXRQChr15g0492111 Helianthus annuus HOM05D006487 ORTHO05D007982 2.7e-47 193.7 282 45.4
Atru.chr9.84 Acer truncatum HOM05D006487 ORTHO05D007982 3.6e-47 193.4 136 66.2
MSTRG.23212 Avicennia marina HOM05D006487 ORTHO05D007982 4.7e-47 193.0 284 41.2
Aa31LG10G5380 Aethionema arabicum HOM05D006487 ORTHO05D007982 1.0e-46 191.8 260 44.2
Carub.0001s3750 Capsella rubella HOM05D006487 ORTHO05D007982 6.8e-46 189.1 268 44.4
CARHR037990 Cardamine hirsuta HOM05D006487 ORTHO05D007982 2.0e-45 187.6 265 42.3
AUR62040775 Chenopodium quinoa HOM05D006487 ORTHO05D007982 4.4e-45 186.4 167 58.7
AT1G48380 Arabidopsis thaliana HOM05D006487 ORTHO05D007982 5.7e-45 186.0 274 43.1
BcaB04g17434 Brassica carinata HOM05D006487 ORTHO05D007982 1.3e-44 184.9 277 43.0
Cc04_g08450 Coffea canephora HOM05D006487 ORTHO05D007982 6.3e-44 182.6 301 41.5
A08p04750 Brassica napus HOM05D006487 ORTHO05D007982 8.3e-44 182.2 279 43.4
BraA08t32504Z Brassica rapa HOM05D006487 ORTHO05D007982 8.3e-44 182.2 279 43.4
Lj9A412T44 Lonicera japonica HOM05D006487 ORTHO05D007982 2.4e-43 180.6 267 44.6
AUR62033020 Chenopodium quinoa HOM05D006487 ORTHO05D007982 5.4e-43 179.5 276 40.9
Cpa.g.sc168.16 Carica papaya HOM05D006487 ORTHO05D007982 4.5e-42 176.4 136 63.2
BcaC07g37138 Brassica carinata HOM05D006487 ORTHO05D007982 2.3e-41 174.1 276 41.7
C08p05120 Brassica napus HOM05D006487 ORTHO05D007982 2.9e-41 173.7 278 41.4
Sc07g0007560 Simmondsia chinensis HOM05D006487 ORTHO05D007982 6.5e-41 172.6 279 43.4
BolC8t47322H Brassica oleracea HOM05D006487 ORTHO05D007982 8.6e-41 172.2 275 41.5
THA.LOC104820327 Tarenaya hassleriana HOM05D006487 ORTHO05D007982 8.6e-41 172.2 260 43.5
vmacro17744 Vaccinium macrocarpon HOM05D006487 ORTHO05D007982 8.6e-41 172.2 210 44.3
ClCG01G014820 Citrullus lanatus HOM05D006487 ORTHO05D007982 3.2e-40 170.2 141 61.7
Prupe.4G244900 Prunus persica HOM05D006487 ORTHO05D007982 2.8e-39 167.2 128 62.5
Ca_30285_v3 Cicer arietinum L. HOM05D006487 ORTHO05D007982 4.0e-38 163.3 218 49.1
ATR0618G270 Amborella trichopoda HOM05D006487 ORTHO05D007982 6.8e-38 162.5 296 38.9
FAN04G2664 Fragaria x ananassa HOM05D006487 ORTHO05D007982 1.8e-35 154.5 311 38.3
Os07g0172200 Oryza sativa ssp. japonica HOM05D006487 ORTHO05D007982 3.1e-35 153.7 291 38.5
Eucgr.H00648 Eucalyptus grandis HOM05D006487 ORTHO05D007982 4.1e-35 153.3 109 65.1
CSS0035874 Camellia sinensis var. sinensis HOM05D006487 ORTHO05D007982 4.5e-34 149.8 262 39.3
HPP92_014774 Vanilla planifolia HOM05D006487 ORTHO05D007982 2.5e-32 144.1 279 37.6
EL10Ac8g19478 Beta vulgaris HOM05D006487 ORTHO05D007982 4.3e-32 143.3 238 37.8
CDE04G1004 Ceratophyllum demersum HOM05D006487 ORTHO05D007982 4.7e-31 139.8 269 34.9
Zm00001eb271770 Zea mays HOM05D006487 ORTHO05D007982 8.0e-31 139.0 272 36.4
Hund22367 Selenicereus undatus HOM05D006487 ORTHO05D007982 5.4e-27 126.3 166 44.6
SEGI_16734 Sequoiadendron giganteum HOM05D006487 ORTHO05D007982 7.0e-27 125.9 274 32.5
AagrBONN_evm.TU.Sc2ySwM_228.567 Anthoceros agrestis HOM05D006487 ORTHO05D007982 2.7e-26 124.0 167 41.9
Mapoly0080s0074 Marchantia polymorpha HOM05D006487 ORTHO05D007982 1.0e-25 122.1 163 40.5
Pp3c5_25480 Physcomitrium patens HOM05D006487 ORTHO05D007982 8.6e-25 119.0 433 26.8
Prupe.2G315400 Prunus persica HOM05D006487 ORTHO05D007982 7.3e-24 115.9 160 45.6
SMO117G0078 Selaginella moellendorffii HOM05D006487 ORTHO05D007982 2.3e-22 110.9 88 53.4
Pp3c25_9140 Physcomitrium patens HOM05D006487 ORTHO05D007982 1.7e-20 104.8 316 30.1
ECA232G2176 Erigeron canadensis HOM05D006487 ORTHO05D007982 4.7e-15 86.7 220 34.5
TAR629G1006 Trochodendron aralioides HOM05D006487 ORTHO05D007982 9.9e-13 79.0 36 94.4
FAN09G0815 Fragaria x ananassa HOM05D006487 ORTHO05D007982 4.9e-12 76.6 36 88.9
FAN09G4505 Fragaria x ananassa HOM05D006487 ORTHO05D007982 1.9e-11 74.7 35 88.6
BcaC05g27591 Brassica carinata HOM05D006487 ORTHO05D007982 4.1e-11 73.6 119 40.3
Cre13.g576500 Chlamydomonas reinhardtii HOM05D006487 ORTHO05D007982 8.6e-09 65.9 59 47.5
BcaC05g27879 Brassica carinata HOM05D024450 ORTHO05D007982 3.3e-08 63.9 85 43.5
PRCOL_00006754 Prasinoderma coloniale HOM05D006487 ORTHO05D007982 9.5e-08 62.4 97 39.2
vmacro17743 Vaccinium macrocarpon HOM05D006487 ORTHO05D007982 4.7e-07 60.1 255 30.6


User provided reference genes

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