Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017859 Carpinus fangiana HOM05D006270 ORTHO05D007755 3.5e-152 541.6 268 100.0
Haze_18335 Corylus avellana HOM05D006270 ORTHO05D007755 4.5e-136 488.0 268 90.7
QL09p054436 Quercus lobata HOM05D006270 ORTHO05D007755 4.3e-94 348.6 291 66.3
QL09p054318 Quercus lobata HOM05D006270 ORTHO05D007755 9.9e-91 337.4 229 75.5
Glyma.08G240100 Glycine max HOM05D006270 ORTHO05D007755 1.6e-80 303.5 281 59.1
Glyma.12G002000 Glycine max HOM05D006270 ORTHO05D007755 2.3e-79 299.7 287 57.5
Dinv03143 Davidia involucrata HOM05D006270 ORTHO05D007755 1.5e-78 297.0 201 70.1
GSVIVG01026015001 Vitis vinifera HOM05D006270 ORTHO05D007755 2.5e-78 296.2 266 62.4
FAN06G0691 Fragaria x ananassa HOM05D006270 ORTHO05D007755 4.3e-78 295.4 198 71.7
FAN06G0861 Fragaria x ananassa HOM05D006270 ORTHO05D007755 4.3e-78 295.4 206 69.4
FAN10G3159 Fragaria x ananassa HOM05D006270 ORTHO05D007755 2.8e-77 292.7 215 67.9
Lj3g0009409 Lotus japonicus HOM05D006270 ORTHO05D007755 2.8e-77 292.7 247 62.3
VMungo1127G1589 Vigna mungo HOM05D006270 ORTHO05D007755 6.2e-77 291.6 206 68.9
FAN01G1506 Fragaria x ananassa HOM05D006270 ORTHO05D007755 1.4e-76 290.4 206 68.9
FAN10G0687 Fragaria x ananassa HOM05D006270 ORTHO05D007755 1.4e-76 290.4 206 68.9
Phvul.011G002300 Phaseolus vulgaris HOM05D006270 ORTHO05D007755 1.4e-76 290.4 206 68.0
FAN03G2743 Fragaria x ananassa HOM05D006270 ORTHO05D007755 2.4e-76 289.7 206 68.9
arahy.Tifrunner.gnm1.ann1.WW5SAZ Arachis hypogaea HOM05D006270 ORTHO05D007755 5.3e-76 288.5 191 74.3
TAR628G1531 Trochodendron aralioides HOM05D006270 ORTHO05D007755 5.3e-76 288.5 211 70.1
arahy.Tifrunner.gnm1.ann1.3FR1H5 Arachis hypogaea HOM05D006270 ORTHO05D007755 1.5e-75 287.0 191 74.3
RcHm_v2.0_Chr1g0380911 Rosa chinensis HOM05D006270 ORTHO05D007755 4.5e-75 285.4 206 67.0
CiPaw.16G073500 Carya illinoinensis HOM05D006270 ORTHO05D007755 5.8e-75 285.0 285 58.6
Aqoxy6G00085 Aquilegia oxysepala HOM05D006270 ORTHO05D007755 9.9e-75 284.3 203 70.4
TPR.G27896 Trifolium pratense HOM05D006270 ORTHO05D007755 1.3e-74 283.9 196 69.9
Actinidia23030 Actinidia chinensis HOM05D006270 ORTHO05D007755 6.4e-74 281.6 285 56.1
Lalb_Chr01g0000131 Lupinus albus HOM05D006270 ORTHO05D007755 1.1e-73 280.8 228 60.5
Psat7g147160 Pisum sativum HOM05D006270 ORTHO05D007755 2.5e-73 279.6 211 65.9
Thecc.03G315400 Theobroma cacao HOM05D006270 ORTHO05D007755 3.2e-73 279.3 193 68.4
Rhsim12G0005700 Rhododendron simsii HOM05D006270 ORTHO05D007755 4.2e-73 278.9 213 66.2
Cc10_g11640 Coffea canephora HOM05D006270 ORTHO05D007755 1.1e-70 270.8 269 57.2
Ciclev10021647m.g Citrus clementina HOM05D006270 ORTHO05D007755 1.5e-70 270.4 198 70.2
PSO782G5577 Papaver somniferum HOM05D006270 ORTHO05D007755 3.3e-70 269.2 201 69.7
TWI59G0231 Tripterygium wilfordii HOM05D006270 ORTHO05D007755 3.3e-70 269.2 205 65.9
CANSAT21G0664 Cannabis sativa HOM05D006270 ORTHO05D007755 4.3e-70 268.9 235 59.6
Duzib205G0009 Durio zibethinus HOM05D006270 ORTHO05D007755 4.3e-70 268.9 194 69.1
ECA232G4580 Erigeron canadensis HOM05D006270 ORTHO05D007755 5.6e-70 268.5 199 64.8
Potri.005G054600 Populus trichocarpa HOM05D006270 ORTHO05D007755 5.6e-70 268.5 209 65.1
Gohir.D08G172100 Gossypium hirsutum HOM05D006270 ORTHO05D007755 7.4e-70 268.1 194 67.5
Gorai.004G179400 Gossypium raimondii HOM05D006270 ORTHO05D007755 7.4e-70 268.1 194 67.5
Nitab4.5_0000167g0160 Nicotiana tabacum HOM05D006270 ORTHO05D007755 1.3e-69 267.3 247 58.3
Manes.08G135800 Manihot esculenta HOM05D006270 ORTHO05D007755 2.8e-69 266.2 212 65.1
Migut.C01268 Erythranthe guttata HOM05D006270 ORTHO05D007755 4.8e-69 265.4 196 65.8
Nitab4.5_0001579g0030 Nicotiana tabacum HOM05D006270 ORTHO05D007755 8.2e-69 264.6 193 67.9
Gohir.A08G151000 Gossypium hirsutum HOM05D006270 ORTHO05D007755 1.8e-68 263.5 194 66.5
Atru.chr13.2329 Acer truncatum HOM05D006270 ORTHO05D007755 3.1e-68 262.7 194 67.0
MSTRG.25449 Avicennia marina HOM05D006270 ORTHO05D007755 3.1e-68 262.7 205 62.9
Oeu032990.1 Olea europaea HOM05D006270 ORTHO05D007755 3.1e-68 262.7 194 66.0
Lsat_1_v5_gn_0_7900 Lactuca sativa HOM05D006270 ORTHO05D007755 5.3e-68 261.9 208 61.1
PGSC0003DMG400014297 Solanum tuberosum HOM05D006270 ORTHO05D007755 5.3e-68 261.9 193 66.8
vmacro00974 Vaccinium macrocarpon HOM05D006270 ORTHO05D007755 5.3e-68 261.9 203 67.0
PSO170G6113 Papaver somniferum HOM05D006270 ORTHO05D007755 9.0e-68 261.2 201 68.7
DCAR_028408 Daucus carota HOM05D006270 ORTHO05D007755 2.6e-67 259.6 209 62.7
Sopen03g004530 Solanum pennellii HOM05D006270 ORTHO05D007755 2.6e-67 259.6 220 60.0
ATR1136G034 Amborella trichopoda HOM05D006270 ORTHO05D007755 3.4e-67 259.2 202 66.8
Solyc03g025710.3 Solanum lycopersicum HOM05D006270 ORTHO05D007755 3.4e-67 259.2 212 62.3
HanXRQChr05g0147941 Helianthus annuus HOM05D006270 ORTHO05D007755 1.0e-66 257.7 199 64.3
AUR62023526 Chenopodium quinoa HOM05D006270 ORTHO05D007755 2.9e-66 256.1 204 65.7
Sabra05G0047500 Salix brachista HOM05D006270 ORTHO05D007755 2.9e-66 256.1 220 62.3
Sc23g0001640 Simmondsia chinensis HOM05D006270 ORTHO05D007755 4.9e-66 255.4 250 56.8
SalBow7G0089 Salvia bowleyana HOM05D006270 ORTHO05D007755 8.4e-66 254.6 194 63.4
SGA_v2.0_scaffold24G10562 Striga asiatica HOM05D006270 ORTHO05D007755 2.5e-65 253.1 195 63.1
PGR102G0747 Punica granatum HOM05D006270 ORTHO05D007755 4.2e-65 252.3 191 69.6
CAN.G307.5 Capsicum annuum HOM05D006270 ORTHO05D007755 1.3e-63 247.3 191 63.4
Eucgr.F02983 Eucalyptus grandis HOM05D006270 ORTHO05D007755 5.1e-63 245.4 195 64.6
EL10Ac1g00156 Beta vulgaris HOM05D006270 ORTHO05D007755 5.7e-62 241.9 200 63.0
ClCG09G010100 Citrullus lanatus HOM05D006270 ORTHO05D007755 5.7e-62 241.9 280 49.3
CsaV3_7G024750 Cucumis sativus L. HOM05D006270 ORTHO05D007755 9.7e-62 241.1 277 48.4
C06p35210 Brassica napus HOM05D006270 ORTHO05D007755 1.6e-61 240.4 193 62.7
Sed0023542 Sechium edule HOM05D006270 ORTHO05D007755 2.2e-61 240.0 267 49.8
A07p30450 Brassica napus HOM05D006270 ORTHO05D007755 2.8e-61 239.6 193 62.7
BcaC08g45741 Brassica carinata HOM05D006270 ORTHO05D007755 3.7e-61 239.2 193 62.7
BolC6t38627H Brassica oleracea HOM05D006270 ORTHO05D007755 3.7e-61 239.2 193 62.7
BraA07t30681Z Brassica rapa HOM05D006270 ORTHO05D007755 3.7e-61 239.2 193 62.7
Thhalv10019029m.g Eutrema salsugineum HOM05D006270 ORTHO05D007755 6.3e-61 238.4 233 55.4
CARHR064850 Cardamine hirsuta HOM05D006270 ORTHO05D007755 1.1e-60 237.7 209 59.3
BcaB03g15641 Brassica carinata HOM05D006270 ORTHO05D007755 1.4e-60 237.3 193 62.2
Sp5g27100 Schrenkiella parvula HOM05D006270 ORTHO05D007755 1.4e-60 237.3 242 54.1
Cpa.g.sc66.22 Carica papaya HOM05D006270 ORTHO05D007755 3.1e-60 236.1 205 59.0
THA.LOC104809733 Tarenaya hassleriana HOM05D006270 ORTHO05D007755 3.4e-59 232.6 195 60.0
Nitab4.5_0000167g0150 Nicotiana tabacum HOM05D006270 ORTHO05D007755 4.5e-59 232.3 246 54.9
Peaxi162Scf01013g00026 Petunia axillaris HOM05D006270 ORTHO05D007755 4.5e-59 232.3 191 57.1
Aa31LG4G10780 Aethionema arabicum HOM05D006270 ORTHO05D007755 5.9e-59 231.9 237 52.3
AL2G31660 Arabidopsis lyrata HOM05D006270 ORTHO05D007755 1.7e-58 230.3 209 58.4
AT1G72030 Arabidopsis thaliana HOM05D006270 ORTHO05D007755 3.8e-58 229.2 209 58.4
Carub.0002s1881 Capsella rubella HOM05D006270 ORTHO05D007755 3.8e-58 229.2 234 55.1
Nitab4.5_0001579g0080 Nicotiana tabacum HOM05D006270 ORTHO05D007755 3.8e-58 229.2 197 61.4
COL.COLO4_16875 Corchorus olitorius HOM05D006270 ORTHO05D007755 8.5e-58 228.0 162 67.9
Nn5g27482 Nelumbo nucifera HOM05D006270 ORTHO05D007755 1.1e-57 227.6 260 52.7
Os07g0264800 Oryza sativa ssp. japonica HOM05D006270 ORTHO05D007755 1.6e-56 223.8 195 59.5
HPP92_002765 Vanilla planifolia HOM05D006270 ORTHO05D007755 3.0e-55 219.5 190 59.5
Ca_19683_v3 Cicer arietinum L. HOM05D006270 ORTHO05D007755 8.8e-55 218.0 144 72.9
unitig_8.g2905 Utricularia gibba HOM05D006270 ORTHO05D007755 5.7e-54 215.3 215 53.0
SEGI_40158 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 1.1e-52 211.1 218 49.1
Sopen11g010160 Solanum pennellii HOM05D006270 ORTHO05D007755 3.1e-52 209.5 184 54.9
PGSC0003DMG400034528 Solanum tuberosum HOM05D006270 ORTHO05D007755 9.1e-52 208.0 187 56.1
CAN.G1280.16 Capsicum annuum HOM05D006270 ORTHO05D007755 2.6e-51 206.5 194 57.2
PGSC0003DMG400007305 Solanum tuberosum HOM05D006270 ORTHO05D007755 2.6e-51 206.5 210 55.2
Lj7A621T38 Lonicera japonica HOM05D006270 ORTHO05D007755 2.9e-50 203.0 146 66.4
SMO352G0005 Selaginella moellendorffii HOM05D006270 ORTHO05D007755 5.5e-49 198.7 193 50.3
Pp3c3_19510 Physcomitrium patens HOM05D006270 ORTHO05D007755 8.2e-45 184.9 192 49.5
FvH4_7g31720 Fragaria vesca HOM05D006270 ORTHO05D007755 7.7e-43 178.3 137 65.7
Prupe.2G311100 Prunus persica HOM05D006270 ORTHO05D007755 2.9e-42 176.4 126 71.4
CDE04G3476 Ceratophyllum demersum HOM05D006270 ORTHO05D007755 5.5e-41 172.2 182 52.7
CSS0031567 Camellia sinensis var. sinensis HOM05D006270 ORTHO05D007755 3.9e-39 166.0 129 66.7
AUR62004580 Chenopodium quinoa HOM05D006270 ORTHO05D007755 2.8e-37 159.8 112 73.2
Mapoly0148s0033 Marchantia polymorpha HOM05D006270 ORTHO05D007755 3.1e-36 156.4 188 44.1
MELO3C024085.2 Cucumis melo HOM05D006270 ORTHO05D007755 4.2e-33 146.0 205 43.9
MBI06_g06704_MAGBIO Magnolia biondii HOM05D006270 ORTHO05D007755 4.7e-32 142.5 145 55.9
Zm00001eb304740 Zea mays HOM05D006270 ORTHO05D007755 5.2e-31 139.0 126 59.5
SEGI_10565 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 4.8e-29 132.5 132 52.3
Solyc11g020000.1 Solanum lycopersicum HOM05D006270 ORTHO05D007755 1.4e-28 131.0 184 39.7
SEGI_32338 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 3.8e-26 122.9 117 54.7
Ah.05g178770 Amaranthus hybridus HOM05D006270 ORTHO05D007755 2.3e-23 113.6 134 50.7
GSVIVG01026021001 Vitis vinifera HOM05D000026 ORTHO05D001436 5.2e-23 112.5 92 64.1
AagrBONN_evm.TU.Sc2ySwM_228.4762 Anthoceros agrestis HOM05D006270 ORTHO05D007755 2.0e-22 110.5 152 44.1
Nitab4.5_0000329g0020 Nicotiana tabacum HOM05D006270 ORTHO05D007755 3.7e-21 106.3 127 51.2
Cre06.g269100 Chlamydomonas reinhardtii HOM05D006270 ORTHO05D007755 1.2e-19 101.3 201 32.3
SEGI_00952 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 1.2e-19 101.3 113 48.7
MD01G1220200 Malus domestica HOM05D006270 ORTHO05D007755 4.5e-19 99.4 80 61.2
CBR_g50390 Chara braunii HOM05D000019 ORTHO05D000002 6.6e-18 95.5 112 42.0
SEGI_26224 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 9.8e-14 81.6 97 48.5
GSVIVG01026018001 Vitis vinifera HOM05D006270 ORTHO05D007755 7.8e-11 72.0 46 71.7
MCO01G622 Micromonas commoda HOM05D004023 ORTHO05D004681 8.9e-07 58.5 204 27.9
Cre16.g657150 Chlamydomonas reinhardtii HOM05D006270 ORTHO05D007755 1.5e-06 57.8 112 36.6
SEGI_16930 Sequoiadendron giganteum HOM05D005733 ORTHO05D007442 5.8e-06 55.8 78 32.1


User provided reference genes

Program Settings