Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017851 Carpinus fangiana HOM05D001921 ORTHO05D001784 2.3e-31 138.3 70 100.0
Haze_01021 Corylus avellana HOM05D001921 ORTHO05D001784 1.4e-25 119.0 70 85.7
Cfa015526 Carpinus fangiana HOM05D001921 ORTHO05D001784 1.9e-25 118.6 68 86.8
Cfa010136 Carpinus fangiana HOM05D001921 ORTHO05D001784 1.6e-24 115.5 70 82.9
CiPaw.02G088800 Carya illinoinensis HOM05D001921 ORTHO05D001784 2.8e-21 104.8 70 77.1
ClCG06G005610 Citrullus lanatus HOM05D001921 ORTHO05D001784 6.9e-20 100.1 68 73.5
Prupe.1G145900 Prunus persica HOM05D001921 ORTHO05D001784 2.6e-19 98.2 69 73.9
QL06p006408 Quercus lobata HOM05D001921 ORTHO05D001784 2.6e-19 98.2 75 69.3
CsaV3_6G005540 Cucumis sativus L. HOM05D001921 ORTHO05D001784 2.2e-18 95.1 67 71.6
MELO3C021383.2 Cucumis melo HOM05D001921 ORTHO05D001784 2.9e-18 94.7 67 71.6
Sabra08G0162400 Salix brachista HOM05D001921 ORTHO05D001784 5.0e-18 94.0 70 71.4
Cpa.g.sc16.79 Carica papaya HOM05D001921 ORTHO05D001784 6.5e-18 93.6 70 71.4
TAR365G0872 Trochodendron aralioides HOM05D001921 ORTHO05D001784 8.5e-18 93.2 69 69.6
Manes.15G019800 Manihot esculenta HOM05D001921 ORTHO05D001784 1.1e-17 92.8 68 73.5
TAR362G1200 Trochodendron aralioides HOM05D001921 ORTHO05D001784 1.9e-17 92.0 69 68.1
Potri.010G027500 Populus trichocarpa HOM05D001921 ORTHO05D001784 2.5e-17 91.7 68 72.1
Manes.03G188600 Manihot esculenta HOM05D001921 ORTHO05D001784 3.2e-17 91.3 68 72.1
CANSAT78G1722 Cannabis sativa HOM05D001921 ORTHO05D001784 7.2e-17 90.1 68 66.2
Thecc.04G273300 Theobroma cacao HOM05D001921 ORTHO05D001784 7.2e-17 90.1 70 68.6
Duzib212G0985 Durio zibethinus HOM05D001921 ORTHO05D001784 1.2e-16 89.4 70 68.6
Sed0007577 Sechium edule HOM05D001921 ORTHO05D001784 1.6e-16 89.0 68 69.1
Potri.008G198000 Populus trichocarpa HOM05D001921 ORTHO05D001784 2.7e-16 88.2 69 69.6
CiPaw.01G156200 Carya illinoinensis HOM05D001921 ORTHO05D001784 6.1e-16 87.0 70 64.3
Duzib151G0850 Durio zibethinus HOM05D001921 ORTHO05D001784 8.0e-16 86.7 70 64.3
TAR636G3386 Trochodendron aralioides HOM05D001921 ORTHO05D001784 8.0e-16 86.7 69 63.8
Gohir.D09G059900 Gossypium hirsutum HOM05D001921 ORTHO05D001784 1.0e-15 86.3 70 67.1
Gorai.006G074600 Gossypium raimondii HOM05D001921 ORTHO05D001784 1.0e-15 86.3 70 67.1
Gohir.A09G060900 Gossypium hirsutum HOM05D001921 ORTHO05D001784 1.8e-15 85.5 70 67.1
PGR031G1199 Punica granatum HOM05D001921 ORTHO05D001784 2.3e-15 85.1 65 66.2
FvH4_4g16740 Fragaria vesca HOM05D001921 ORTHO05D001784 3.9e-15 84.3 69 68.1
FAN12G2234 Fragaria x ananassa HOM05D001921 ORTHO05D001784 3.9e-15 84.3 69 68.1
FAN12G3386 Fragaria x ananassa HOM05D001921 ORTHO05D001784 3.9e-15 84.3 69 68.1
FAN22G2319 Fragaria x ananassa HOM05D001921 ORTHO05D001784 3.9e-15 84.3 69 68.1
Sed0022941 Sechium edule HOM05D001921 ORTHO05D001784 3.9e-15 84.3 68 61.8
Gohir.A10G105100 Gossypium hirsutum HOM05D001921 ORTHO05D001784 5.2e-15 84.0 70 65.7
Gohir.D10G163601 Gossypium hirsutum HOM05D001921 ORTHO05D001784 5.2e-15 84.0 70 65.7
RcHm_v2.0_Chr4g0420321 Rosa chinensis HOM05D001921 ORTHO05D001784 1.5e-14 82.4 69 65.2
FAN17G2860 Fragaria x ananassa HOM05D001921 ORTHO05D001784 2.0e-14 82.0 69 66.7
Gorai.011G182400 Gossypium raimondii HOM05D001921 ORTHO05D001784 2.0e-14 82.0 70 64.3
PGR004G0777 Punica granatum HOM05D001921 ORTHO05D001784 2.0e-14 82.0 65 69.2
VMungo0540G1436 Vigna mungo HOM05D001921 ORTHO05D001784 2.0e-14 82.0 67 64.2
Ciclev10005894m.g Citrus clementina HOM05D001921 ORTHO05D001784 3.3e-14 81.3 69 63.8
Sabra10G0013000 Salix brachista HOM05D001921 ORTHO05D001784 4.4e-14 80.9 52 76.9
Lj6g0003156 Lotus japonicus HOM05D001921 ORTHO05D001784 1.3e-13 79.3 68 63.2
Lj6g0019677 Lotus japonicus HOM05D001921 ORTHO05D001784 1.3e-13 79.3 68 63.2
TPR.G18029 Trifolium pratense HOM05D001921 ORTHO05D001784 1.3e-13 79.3 64 60.9
ATR0580G129 Amborella trichopoda HOM05D001921 ORTHO05D001784 1.7e-13 79.0 69 56.5
Ca_00585_v3 Cicer arietinum L. HOM05D001921 ORTHO05D001784 2.2e-13 78.6 67 58.2
Ca_21561_v3 Cicer arietinum L. HOM05D001921 ORTHO05D001784 3.7e-13 77.8 53 71.7
FAN07G0769 Fragaria x ananassa HOM05D001921 ORTHO05D001784 3.7e-13 77.8 65 67.7
Medtr2g020830 Medicago truncatula HOM05D001921 ORTHO05D001784 3.7e-13 77.8 67 61.2
Glyma.13G212500 Glycine max HOM05D001921 ORTHO05D001784 8.2e-13 76.6 68 63.2
Psat1g185920 Pisum sativum HOM05D001921 ORTHO05D001784 1.1e-12 76.3 67 59.7
VMungo1215G1281 Vigna mungo HOM05D001921 ORTHO05D001784 1.1e-12 76.3 51 70.6
Eucgr.H03650 Eucalyptus grandis HOM05D001921 ORTHO05D001784 5.3e-12 73.9 51 72.5
Glyma.17G021000 Glycine max HOM05D001921 ORTHO05D001784 5.3e-12 73.9 51 70.6
Hma1.2p1_0643F.1_g194540 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 7.0e-12 73.6 72 58.3
Phvul.006G158900 Phaseolus vulgaris HOM05D001921 ORTHO05D001784 7.0e-12 73.6 66 62.1
Glyma.07G253400 Glycine max HOM05D001921 ORTHO05D001784 9.1e-12 73.2 51 70.6
Psat4g028640 Pisum sativum HOM05D001921 ORTHO05D001784 9.1e-12 73.2 53 67.9
arahy.Tifrunner.gnm1.ann1.288BMH Arachis hypogaea HOM05D001921 ORTHO05D001784 1.2e-11 72.8 74 52.7
arahy.Tifrunner.gnm1.ann1.XA6I97 Arachis hypogaea HOM05D001921 ORTHO05D001784 1.2e-11 72.8 74 52.7
Glyma.15G100300 Glycine max HOM05D001921 ORTHO05D001784 1.6e-11 72.4 68 61.8
Phvul.003G098700 Phaseolus vulgaris HOM05D001921 ORTHO05D001784 2.6e-11 71.6 51 68.6
Lalb_Chr15g0087151 Lupinus albus HOM05D001921 ORTHO05D001784 5.9e-11 70.5 66 59.1
Hma1.2p1_0511F.1_g169240 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 7.7e-11 70.1 59 62.7
MBI18_g10965_MAGBIO Magnolia biondii HOM05D001921 ORTHO05D001784 7.7e-11 70.1 69 58.0
MD03G1009700 Malus domestica HOM05D001921 ORTHO05D001784 1.0e-10 69.7 56 66.1
Oeu032694.1 Olea europaea HOM05D001921 ORTHO05D001784 1.3e-10 69.3 71 54.9
Sc15g0003760 Simmondsia chinensis HOM05D001921 ORTHO05D001784 1.7e-10 68.9 47 76.6
Oeu022233.1 Olea europaea HOM05D001921 ORTHO05D001784 2.9e-10 68.2 73 56.2
TPR.G28126 Trifolium pratense HOM05D001921 ORTHO05D001784 2.9e-10 68.2 52 65.4
Lalb_Chr12g0196391 Lupinus albus HOM05D001921 ORTHO05D001784 3.8e-10 67.8 54 61.1
Medtr4g118490 Medicago truncatula HOM05D001921 ORTHO05D001784 3.8e-10 67.8 50 68.0
Aqoxy2G03179 Aquilegia oxysepala HOM05D001921 ORTHO05D001784 6.5e-10 67.0 64 57.8
Nitab4.5_0009936g0010 Nicotiana tabacum HOM05D001921 ORTHO05D001784 6.5e-10 67.0 71 53.5
Atru.chr4.2710 Acer truncatum HOM05D001921 ORTHO05D001784 8.5e-10 66.6 48 68.8
Rhsim02G0016000 Rhododendron simsii HOM05D001921 ORTHO05D001784 1.1e-09 66.2 73 53.4
Actinidia32376 Actinidia chinensis HOM05D001921 ORTHO05D001784 1.5e-09 65.9 68 52.9
DCAR_027127 Daucus carota HOM05D001921 ORTHO05D001784 1.9e-09 65.5 66 51.5
Lj4g0019196 Lotus japonicus HOM05D001921 ORTHO05D001784 1.9e-09 65.5 46 69.6
MBI19_g25275_MAGBIO Magnolia biondii HOM05D001921 ORTHO05D001784 1.9e-09 65.5 53 60.4
Nitab4.5_0002295g0070 Nicotiana tabacum HOM05D001921 ORTHO05D001784 2.5e-09 65.1 71 52.1
AT3G21570 Arabidopsis thaliana HOM05D001921 ORTHO05D001784 3.2e-09 64.7 54 64.8
MSTRG.3970 Avicennia marina HOM05D001921 ORTHO05D001784 9.4e-09 63.2 51 66.7
DCAR_030578 Daucus carota HOM05D001921 ORTHO05D001784 1.2e-08 62.8 50 60.0
SGA_v2.0_scaffold142G35647 Striga asiatica HOM05D001921 ORTHO05D001784 1.2e-08 62.8 73 53.4
Nitab4.5_0003070g0060 Nicotiana tabacum HOM05D001921 ORTHO05D001784 1.6e-08 62.4 72 56.9
SalBow2G1161 Salvia bowleyana HOM05D001921 ORTHO05D001784 1.6e-08 62.4 72 58.3
AL3G35680 Arabidopsis lyrata HOM05D001921 ORTHO05D001784 2.1e-08 62.0 54 64.8
DCAR_002429 Daucus carota HOM05D001921 ORTHO05D001784 2.1e-08 62.0 68 55.9
DCAR_023282 Daucus carota HOM05D001921 ORTHO05D001784 2.1e-08 62.0 68 55.9
Aa31LG8G8240 Aethionema arabicum HOM05D001921 ORTHO05D001784 2.7e-08 61.6 53 62.3
BcaC09g49094 Brassica carinata HOM05D001921 ORTHO05D001784 3.6e-08 61.2 54 63.0
A01p33350 Brassica napus HOM05D001921 ORTHO05D001784 3.6e-08 61.2 54 63.0
C01p42590 Brassica napus HOM05D001921 ORTHO05D001784 3.6e-08 61.2 54 63.0
BolC1t04216H Brassica oleracea HOM05D001921 ORTHO05D001784 3.6e-08 61.2 54 63.0
BraA01t03453Z Brassica rapa HOM05D001921 ORTHO05D001784 3.6e-08 61.2 54 63.0
Carub.0003s2161 Capsella rubella HOM05D001921 ORTHO05D001784 3.6e-08 61.2 61 57.4
PGSC0003DMG400030765 Solanum tuberosum HOM05D001921 ORTHO05D001784 3.6e-08 61.2 68 52.9
Lalb_Chr18g0055871 Lupinus albus HOM05D001921 ORTHO05D001784 4.7e-08 60.8 48 62.5
Aqoxy5G00575 Aquilegia oxysepala HOM05D001921 ORTHO05D001784 6.1e-08 60.5 49 63.3
BcaB04g20578 Brassica carinata HOM05D001921 ORTHO05D001784 6.1e-08 60.5 54 59.3
Oeu037657.1 Olea europaea HOM05D001921 ORTHO05D001784 6.1e-08 60.5 73 46.6
Sp3g19600 Schrenkiella parvula HOM05D001921 ORTHO05D001784 6.1e-08 60.5 54 61.1
Solyc01g080500.2 Solanum lycopersicum HOM05D001921 ORTHO05D001784 6.1e-08 60.5 73 52.1
Sopen01g032320 Solanum pennellii HOM05D001921 ORTHO05D001784 6.1e-08 60.5 73 52.1
Thecc.09G018900 Theobroma cacao HOM05D001921 ORTHO05D001784 6.1e-08 60.5 67 46.3
CARHR097520 Cardamine hirsuta HOM05D001921 ORTHO05D001784 8.0e-08 60.1 71 50.7
Nitab4.5_0000059g0260 Nicotiana tabacum HOM05D001921 ORTHO05D001784 8.0e-08 60.1 72 55.6
PSO782G1936 Papaver somniferum HOM05D001921 ORTHO05D001784 1.0e-07 59.7 54 59.3
Sopen06g019540 Solanum pennellii HOM05D001921 ORTHO05D001784 1.0e-07 59.7 67 52.2
Atru.chr7.2506 Acer truncatum HOM05D001921 ORTHO05D001784 1.4e-07 59.3 60 46.7
Actinidia00069 Actinidia chinensis HOM05D001921 ORTHO05D001784 1.4e-07 59.3 65 50.8
CDE11G0807 Ceratophyllum demersum HOM05D001921 ORTHO05D001784 1.4e-07 59.3 49 59.2
CAN.G889.1 Capsicum annuum HOM05D001921 ORTHO05D001784 2.3e-07 58.5 75 52.0
Dinv03521 Davidia involucrata HOM05D001921 ORTHO05D001784 2.3e-07 58.5 67 46.3
Os01g0384800 Oryza sativa ssp. japonica HOM05D001921 ORTHO05D001784 2.3e-07 58.5 48 56.2
Solyc06g054470.1 Solanum lycopersicum HOM05D001921 ORTHO05D001784 2.3e-07 58.5 47 61.7
PGSC0003DMG400032113 Solanum tuberosum HOM05D001921 ORTHO05D001784 3.0e-07 58.2 74 50.0
TAR383G0606 Trochodendron aralioides HOM05D001921 ORTHO05D001784 3.0e-07 58.2 68 48.5
Ciclev10009542m.g Citrus clementina HOM05D001921 ORTHO05D001784 4.0e-07 57.8 67 50.7
Nitab4.5_0002992g0090 Nicotiana tabacum HOM05D001921 ORTHO05D001784 4.0e-07 57.8 68 51.5
SGA_v2.0_scaffold89G27578 Striga asiatica HOM05D001921 ORTHO05D001784 4.0e-07 57.8 47 61.7
unitig_748.g8567 Utricularia gibba HOM05D001921 ORTHO05D001784 4.0e-07 57.8 66 57.6
CAN.G256.2 Capsicum annuum HOM05D001921 ORTHO05D001784 5.2e-07 57.4 69 46.4
Gohir.A06G100200 Gossypium hirsutum HOM05D001921 ORTHO05D001784 5.2e-07 57.4 73 45.2
Gohir.A07G030700 Gossypium hirsutum HOM05D001921 ORTHO05D001784 5.2e-07 57.4 74 47.3
Gohir.D06G102300 Gossypium hirsutum HOM05D001921 ORTHO05D001784 5.2e-07 57.4 73 45.2
Gohir.D07G034600 Gossypium hirsutum HOM05D001921 ORTHO05D001784 5.2e-07 57.4 74 47.3
Gorai.001G036300 Gossypium raimondii HOM05D001921 ORTHO05D001784 5.2e-07 57.4 74 47.3
Gorai.010G117300 Gossypium raimondii HOM05D001921 ORTHO05D001784 5.2e-07 57.4 73 45.2
SGA_v2.0_scaffold57G20294 Striga asiatica HOM05D001921 ORTHO05D001784 5.2e-07 57.4 52 61.5
Nitab4.5_0009186g0010 Nicotiana tabacum HOM05D001921 ORTHO05D001784 8.8e-07 56.6 68 51.5
THA.LOC104820224 Tarenaya hassleriana HOM05D001921 ORTHO05D001784 8.8e-07 56.6 51 60.8
Migut.G00240 Erythranthe guttata HOM05D001921 ORTHO05D001784 1.5e-06 55.8 68 48.5
Dinv42904 Davidia involucrata HOM05D001921 ORTHO05D001784 2.0e-06 55.5 68 51.5
Dinv43197 Davidia involucrata HOM05D001921 ORTHO05D001784 2.0e-06 55.5 68 51.5
CAN.G1045.40 Capsicum annuum HOM05D001921 ORTHO05D001784 2.6e-06 55.1 68 50.0
Duzib168G1630 Durio zibethinus HOM05D001921 ORTHO05D001784 2.6e-06 55.1 47 57.4
unitig_32.g11745 Utricularia gibba HOM05D001921 ORTHO05D001784 2.6e-06 55.1 68 54.4
CAN.G142.1 Capsicum annuum HOM05D001921 ORTHO05D001784 3.3e-06 54.7 68 50.0
Duzib187G0974 Durio zibethinus HOM05D001921 ORTHO05D001784 3.3e-06 54.7 69 44.9
Hma1.2p1_0228F.1_g096620 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 3.3e-06 54.7 56 50.0
Aqoxy7G03512 Aquilegia oxysepala HOM05D001921 ORTHO05D001784 4.4e-06 54.3 68 45.6
Cfa020875 Carpinus fangiana HOM05D001921 ORTHO05D001784 4.4e-06 54.3 67 49.3
Hma1.2p1_0028F.1_g017215 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 4.4e-06 54.3 68 51.5
Hma1.2p1_2976F.1_g331170 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 4.4e-06 54.3 68 51.5
Peaxi162Scf00769g00001 Petunia axillaris HOM05D001921 ORTHO05D001784 4.4e-06 54.3 49 59.2
COL.COLO4_18922 Corchorus olitorius HOM05D001921 ORTHO05D001784 5.7e-06 53.9 47 55.3
HPP92_025281 Vanilla planifolia HOM05D001921 ORTHO05D001784 5.7e-06 53.9 70 44.3
Haze_19306 Corylus avellana HOM05D001921 ORTHO05D001784 7.5e-06 53.5 67 47.8
Manes.06G040800 Manihot esculenta HOM05D001921 ORTHO05D001784 7.5e-06 53.5 67 52.2


User provided reference genes

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