Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017841 Carpinus fangiana HOM05D005213 ORTHO05D006229 7.8e-158 560.5 289 100.0
Haze_18367 Corylus avellana HOM05D005213 ORTHO05D006229 2.1e-126 456.1 290 85.9
Cfa023359 Carpinus fangiana HOM05D005213 ORTHO05D006229 1.1e-82 310.8 376 55.6
Haze_13552 Corylus avellana HOM05D005213 ORTHO05D006229 5.9e-81 305.1 374 55.1
TAR624G0676 Trochodendron aralioides HOM05D005213 ORTHO05D006229 9.4e-71 271.2 346 51.2
Prupe.1G401300 Prunus persica HOM05D005213 ORTHO05D006229 2.7e-70 269.6 365 52.1
TWI34G0479 Tripterygium wilfordii HOM05D005213 ORTHO05D006229 4.7e-70 268.9 364 50.5
Potri.006G217900 Populus trichocarpa HOM05D005213 ORTHO05D006229 2.3e-69 266.5 368 48.4
Duzib150G1003 Durio zibethinus HOM05D005213 ORTHO05D006229 2.2e-67 260.0 384 50.0
Duzib187G1454 Durio zibethinus HOM05D005213 ORTHO05D006229 2.8e-67 259.6 368 49.7
CiPaw.16G068600 Carya illinoinensis HOM05D005213 ORTHO05D006229 3.7e-67 259.2 361 51.2
Cpa.g.sc82.19 Carica papaya HOM05D005213 ORTHO05D006229 4.8e-67 258.8 367 51.5
Manes.16G087800 Manihot esculenta HOM05D005213 ORTHO05D006229 6.3e-67 258.5 375 49.6
Ciclev10008490m.g Citrus clementina HOM05D005213 ORTHO05D006229 3.5e-65 252.7 373 50.4
RcHm_v2.0_Chr6g0304741 Rosa chinensis HOM05D005213 ORTHO05D006229 5.0e-64 248.8 372 50.5
Thecc.09G066400 Theobroma cacao HOM05D005213 ORTHO05D006229 6.5e-64 248.4 371 48.2
Gorai.009G039700 Gossypium raimondii HOM05D005213 ORTHO05D006229 1.9e-63 246.9 372 47.3
Gohir.D05G039200 Gossypium hirsutum HOM05D005213 ORTHO05D006229 1.2e-62 244.2 375 47.5
Cc08_g07800 Coffea canephora HOM05D005213 ORTHO05D006229 1.5e-60 237.3 361 48.2
FAN15G1397 Fragaria x ananassa HOM05D005213 ORTHO05D006229 3.7e-59 232.6 360 48.9
FvH4_2g37040 Fragaria vesca HOM05D005213 ORTHO05D006229 4.8e-59 232.3 362 49.2
FAN20G0215 Fragaria x ananassa HOM05D005213 ORTHO05D006229 1.2e-57 227.6 372 47.3
FAN27G3126 Fragaria x ananassa HOM05D005213 ORTHO05D006229 1.6e-57 227.3 372 47.6
Duzib168G1397 Durio zibethinus HOM05D005213 ORTHO05D006229 2.0e-57 226.9 346 48.8
Nn8g38551 Nelumbo nucifera HOM05D005213 ORTHO05D006229 1.5e-55 220.7 360 45.8
Glyma.04G057900 Glycine max HOM05D005213 ORTHO05D006229 3.2e-55 219.5 374 45.2
TPR.G21422 Trifolium pratense HOM05D005213 ORTHO05D006229 4.2e-55 219.2 363 42.7
Lalb_Chr11g0063421 Lupinus albus HOM05D005213 ORTHO05D006229 4.7e-54 215.7 371 44.5
MD15G1047100 Malus domestica HOM05D005213 ORTHO05D006229 6.1e-54 215.3 381 43.8
Migut.A00332 Erythranthe guttata HOM05D005213 ORTHO05D006229 3.0e-53 213.0 343 46.1
Glyma.06G058600 Glycine max HOM05D005213 ORTHO05D006229 5.2e-53 212.2 351 45.0
Medtr3g105580 Medicago truncatula HOM05D005213 ORTHO05D006229 1.2e-52 211.1 351 43.3
Manes.03G055700 Manihot esculenta HOM05D005213 ORTHO05D006229 2.0e-52 210.3 337 45.4
COL.COLO4_21169 Corchorus olitorius HOM05D005213 ORTHO05D006229 3.4e-52 209.5 370 44.3
Ca_15799_v3 Cicer arietinum L. HOM05D005213 ORTHO05D006229 9.8e-52 208.0 362 44.5
MD08G1046900 Malus domestica HOM05D005213 ORTHO05D006229 9.8e-52 208.0 376 42.6
Dinv41845 Davidia involucrata HOM05D005213 ORTHO05D006229 1.3e-51 207.6 383 42.8
VMungo1309G2063 Vigna mungo HOM05D005213 ORTHO05D006229 2.8e-51 206.5 322 45.0
TWI32G0481 Tripterygium wilfordii HOM05D005213 ORTHO05D006229 3.7e-51 206.1 361 44.9
DCAR_001248 Daucus carota HOM05D005213 ORTHO05D006229 4.1e-50 202.6 331 46.2
Lj1g0011388 Lotus japonicus HOM05D005213 ORTHO05D006229 1.2e-49 201.1 349 42.7
Phvul.009G084600 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 1.6e-49 200.7 331 44.1
Eucgr.C00749 Eucalyptus grandis HOM05D005213 ORTHO05D006229 2.0e-49 200.3 368 43.5
Gorai.010G094100 Gossypium raimondii HOM05D005213 ORTHO05D006229 7.7e-49 198.4 347 46.4
Gohir.D06G080700 Gossypium hirsutum HOM05D005213 ORTHO05D006229 1.7e-48 197.2 347 46.1
MBI19_g18107_MAGBIO Magnolia biondii HOM05D004195 ORTHO05D005309 3.8e-48 196.1 359 42.9
Nn6g35650 Nelumbo nucifera HOM05D005213 ORTHO05D006229 4.2e-47 192.6 362 42.0
Gohir.A06G081000 Gossypium hirsutum HOM05D005213 ORTHO05D006229 3.6e-46 189.5 341 45.5
Peaxi162Scf00922g00016 Petunia axillaris HOM05D005213 ORTHO05D006229 1.8e-45 187.2 321 44.2
Aqoxy7G04081 Aquilegia oxysepala HOM05D005213 ORTHO05D006229 2.3e-45 186.8 375 39.5
Hund02523 Selenicereus undatus HOM05D005213 ORTHO05D006229 5.4e-42 175.6 335 40.3
SGA_v2.0_scaffold22G09922 Striga asiatica HOM05D005213 ORTHO05D006229 1.2e-41 174.5 306 42.8
TPR.G38861 Trifolium pratense HOM05D005213 ORTHO05D006229 5.9e-41 172.2 332 41.6
Lj7P206T8 Lonicera japonica HOM05D005213 ORTHO05D006229 2.9e-40 169.9 307 42.7
GSVIVG01035506001 Vitis vinifera HOM05D005213 ORTHO05D006229 3.9e-40 169.5 340 40.0
Psat5g033280 Pisum sativum HOM05D005213 ORTHO05D006229 5.0e-40 169.1 349 39.3
PSO386G0069 Papaver somniferum HOM05D005213 ORTHO05D006229 1.1e-39 167.9 394 38.3
CAN.G1059.3 Capsicum annuum HOM05D005213 ORTHO05D006229 9.5e-39 164.9 341 40.2
CSS0041342 Camellia sinensis var. sinensis HOM05D005213 ORTHO05D006229 5.2e-37 159.1 393 37.7
Nitab4.5_0000508g0090 Nicotiana tabacum HOM05D005213 ORTHO05D006229 4.9e-35 152.5 275 44.4
HanXRQChr08g0228011 Helianthus annuus HOM05D005213 ORTHO05D006229 1.9e-34 150.6 329 39.2
Oeu020105.1 Olea europaea HOM05D005213 ORTHO05D006229 1.9e-34 150.6 312 40.1
Medtr1g014750 Medicago truncatula HOM05D005213 ORTHO05D006229 5.4e-34 149.1 272 44.1
Rhsim04G0156600 Rhododendron simsii HOM05D005213 ORTHO05D006229 1.2e-33 147.9 336 38.7
Oeu022129.1 Olea europaea HOM05D005213 ORTHO05D006229 1.6e-33 147.5 293 42.0
Lalb_Chr22g0349651 Lupinus albus HOM05D005213 ORTHO05D006229 2.7e-33 146.7 312 40.4
Nitab4.5_0007212g0010 Nicotiana tabacum HOM05D005213 ORTHO05D006229 1.3e-32 144.4 231 47.2
ATR0681G043 Amborella trichopoda HOM05D005213 ORTHO05D006229 1.7e-32 144.1 386 36.0
EL10Ac5g11257 Beta vulgaris HOM05D005213 ORTHO05D006229 1.9e-31 140.6 343 37.3
PSO223G0037 Papaver somniferum HOM05D005213 ORTHO05D006229 1.2e-30 137.9 394 35.3
MSTRG.11768 Avicennia marina HOM05D005213 ORTHO05D006229 6.2e-30 135.6 289 39.4
HanXRQChr03g0067421 Helianthus annuus HOM05D005213 ORTHO05D006229 6.2e-30 135.6 342 37.7
AUR62032196 Chenopodium quinoa HOM05D005213 ORTHO05D006229 3.1e-29 133.3 300 39.0
CDE05G3316 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 4.0e-29 132.9 335 36.1
ClCG08G009670 Citrullus lanatus HOM05D005213 ORTHO05D006229 7.5e-28 128.6 324 37.7
ECA240G0440 Erigeron canadensis HOM05D005213 ORTHO05D006229 2.9e-27 126.7 325 36.9
Hma1.2p1_0920F.1_g236590 Hydrangea macrophylla HOM05D005213 ORTHO05D006229 6.4e-27 125.6 319 34.8
CsaV3_6G031800 Cucumis sativus L. HOM05D005213 ORTHO05D006229 8.3e-27 125.2 330 36.1
PGR142G1942 Punica granatum HOM05D005213 ORTHO05D006229 2.4e-26 123.6 324 36.1
HanXRQChr10g0309951 Helianthus annuus HOM05D005213 ORTHO05D006229 2.1e-25 120.6 279 39.4
THA.LOC104810950 Tarenaya hassleriana HOM05D005213 ORTHO05D006229 2.1e-25 120.6 334 35.0
AUR62036963 Chenopodium quinoa HOM05D005213 ORTHO05D006229 3.0e-24 116.7 280 34.3
Zm00001eb019450 Zea mays HOM05D005213 ORTHO05D006229 3.9e-24 116.3 365 31.2
Sed0001538 Sechium edule HOM05D005213 ORTHO05D006229 5.1e-24 115.9 302 34.8
HPP92_002168 Vanilla planifolia HOM05D006173 ORTHO05D007685 1.1e-23 114.8 272 38.2
SalBow8G0306 Salvia bowleyana HOM05D005213 ORTHO05D006229 3.3e-23 113.2 261 41.4
vmacro08659 Vaccinium macrocarpon HOM05D005213 ORTHO05D006229 3.3e-23 113.2 325 37.5
BraA03t10361Z Brassica rapa HOM05D005213 ORTHO05D006229 4.3e-23 112.8 274 37.6
AT5G21280 Arabidopsis thaliana HOM05D005213 ORTHO05D006229 1.2e-22 111.3 294 36.1
CARHR191550 Cardamine hirsuta HOM05D005213 ORTHO05D006229 6.2e-22 109.0 306 35.0
BraA10t43954Z Brassica rapa HOM05D005213 ORTHO05D006229 1.4e-21 107.8 319 32.6
Gohir.A05G037666 Gossypium hirsutum HOM05D005213 ORTHO05D006229 1.8e-21 107.5 160 46.9
A10p18740 Brassica napus HOM05D005213 ORTHO05D006229 3.1e-21 106.7 319 32.6
ECA234G4818 Erigeron canadensis HOM05D005213 ORTHO05D006229 4.0e-21 106.3 261 38.3
CDE05G3450 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 6.8e-21 105.5 340 31.5
A03p10500 Brassica napus HOM05D005213 ORTHO05D006229 8.9e-21 105.1 288 36.5
Phvul.001G044200 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 1.5e-20 104.4 232 37.5
C03p12080 Brassica napus HOM05D005213 ORTHO05D006229 5.8e-20 102.4 277 35.7
BcaC03g13850 Brassica carinata HOM05D005213 ORTHO05D006229 7.6e-20 102.1 295 35.3
BolC2t07127H Brassica oleracea HOM05D005213 ORTHO05D006229 7.6e-20 102.1 295 35.3
C09p54690 Brassica napus HOM05D005213 ORTHO05D006229 9.9e-20 101.7 293 33.1
BolC9t58333H Brassica oleracea HOM05D005213 ORTHO05D006229 9.9e-20 101.7 293 33.1
BcaB05g22758 Brassica carinata HOM05D005213 ORTHO05D006229 1.3e-19 101.3 287 37.3
BNapus_Darmor_BZH_scaffold_38p00940 Brassica napus HOM05D005213 ORTHO05D006229 1.3e-19 101.3 296 36.1
BraA02t05631Z Brassica rapa HOM05D005213 ORTHO05D006229 1.3e-19 101.3 296 36.1
BcaC01g06616 Brassica carinata HOM05D005213 ORTHO05D006229 2.2e-19 100.5 277 35.4
BolC3t13679H Brassica oleracea HOM05D005213 ORTHO05D006229 2.2e-19 100.5 277 35.4
CANSAT25G2504 Cannabis sativa HOM05D005213 ORTHO05D006229 2.9e-19 100.1 320 33.1
MELO3C026560.2 Cucumis melo HOM05D005213 ORTHO05D006229 2.9e-19 100.1 243 37.0
Solyc08g067270.3 Solanum lycopersicum HOM05D005213 ORTHO05D006229 2.9e-19 100.1 217 36.9
BcaB08g36461 Brassica carinata HOM05D005213 ORTHO05D006229 4.9e-19 99.4 285 35.4
Ca_13089_v3 Cicer arietinum L. HOM05D005213 ORTHO05D006229 4.9e-19 99.4 286 34.6
BcaC04g19528 Brassica carinata HOM05D005213 ORTHO05D006229 6.4e-19 99.0 292 32.9
Sc10g0009530 Simmondsia chinensis HOM05D005213 ORTHO05D006229 6.4e-19 99.0 309 30.7
Psat6g023400 Pisum sativum HOM05D005213 ORTHO05D006229 1.2e-17 94.7 298 33.9
VMungo0477G0001 Vigna mungo HOM05D005213 ORTHO05D006229 1.6e-17 94.4 201 40.8
Carub.0006s1962 Capsella rubella HOM05D005213 ORTHO05D006229 2.7e-17 93.6 291 34.4
AL6G32940 Arabidopsis lyrata HOM05D005213 ORTHO05D006229 3.5e-17 93.2 289 33.9
CsaV3_4G036220 Cucumis sativus L. HOM05D005213 ORTHO05D006229 3.0e-16 90.1 304 34.9
Aa31LG1G13440 Aethionema arabicum HOM05D005213 ORTHO05D006229 3.9e-16 89.7 184 44.0
Oeu030214.1 Olea europaea HOM05D005213 ORTHO05D006229 6.6e-16 89.0 300 33.3
Phvul.001G044400 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 1.9e-15 87.4 317 29.0
Atru.chr7.1814 Acer truncatum HOM05D005213 ORTHO05D006229 4.3e-15 86.3 82 62.2
Thhalv10014216m.g Eutrema salsugineum HOM05D005213 ORTHO05D006229 5.6e-15 85.9 293 32.4
MELO3C016931.2 Cucumis melo HOM05D005213 ORTHO05D006229 7.3e-15 85.5 303 34.3
Actinidia26432 Actinidia chinensis HOM05D005213 ORTHO05D006229 2.8e-14 83.6 165 38.8
Phvul.001G044300 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 6.2e-14 82.4 169 40.8
ClCG05G015950 Citrullus lanatus HOM05D005213 ORTHO05D006229 1.8e-13 80.9 283 35.0
Actinidia27819 Actinidia chinensis HOM05D005213 ORTHO05D006229 8.9e-13 78.6 74 64.9
BcaB01g04752 Brassica carinata HOM05D005213 ORTHO05D006229 1.2e-12 78.2 257 32.3
HPP92_013274 Vanilla planifolia HOM05D005213 ORTHO05D006229 1.5e-12 77.8 237 33.3
CDE11G0900 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 2.0e-12 77.4 239 35.1
Sopen08g021200 Solanum pennellii HOM05D005213 ORTHO05D006229 2.6e-12 77.0 116 42.2
Migut.E01467 Erythranthe guttata HOM05D005213 ORTHO05D006229 3.4e-12 76.6 251 31.5
HanXRQChr09g0261901 Helianthus annuus HOM05D005213 ORTHO05D006229 4.4e-12 76.3 233 32.2
unitig_32.g10930 Utricularia gibba HOM05D005213 ORTHO05D006229 1.7e-11 74.3 297 29.0
BraA03t10362Z Brassica rapa HOM05D005213 ORTHO05D006229 2.4e-10 70.5 49 77.6
Lalb_Chr08g0244621 Lupinus albus HOM05D005213 ORTHO05D006229 3.2e-10 70.1 112 38.4
Sp6g23210 Schrenkiella parvula HOM05D005213 ORTHO05D006229 2.1e-09 67.4 270 31.9
ECA236G4272 Erigeron canadensis HOM05D005213 ORTHO05D006229 2.7e-09 67.0 248 31.9
arahy.Tifrunner.gnm1.ann1.698XEU Arachis hypogaea HOM05D005213 ORTHO05D006229 1.7e-08 64.3 307 29.6
arahy.Tifrunner.gnm1.ann1.3D63PE Arachis hypogaea HOM05D005213 ORTHO05D006229 3.9e-08 63.2 308 28.9
unitig_747.g21889 Utricularia gibba HOM05D005213 ORTHO05D006229 3.9e-08 63.2 239 31.4
SGA_v2.0_scaffold4G02181 Striga asiatica HOM05D005213 ORTHO05D006229 5.1e-08 62.8 313 29.1
Zm00001eb109280 Zea mays HOM05D005213 ORTHO05D006229 9.6e-07 58.5 290 30.7


User provided reference genes

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