Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017810 Carpinus fangiana HOM05D005752 ORTHO05D006959 1.7e-100 369.4 193 100.0
TAR636G2449 Trochodendron aralioides HOM05D005752 ORTHO05D006959 4.8e-63 245.0 209 67.9
CiPaw.15G108100 Carya illinoinensis HOM05D005752 ORTHO05D006959 7.0e-62 241.1 214 66.8
TAR472G0004 Trochodendron aralioides HOM05D005752 ORTHO05D006959 2.6e-61 239.2 209 67.0
Ciclev10024397m.g Citrus clementina HOM05D005752 ORTHO05D006959 8.5e-60 234.2 225 62.2
Atru.chr9.27 Acer truncatum HOM05D005752 ORTHO05D006959 9.4e-59 230.7 207 64.7
Lj5C168T8 Lonicera japonica HOM05D005752 ORTHO05D006959 4.7e-58 228.4 193 69.9
Eucgr.H00664 Eucalyptus grandis HOM05D005752 ORTHO05D006959 6.1e-58 228.0 207 65.2
Aqoxy3G04339 Aquilegia oxysepala HOM05D005752 ORTHO05D006959 8.0e-58 227.6 209 64.1
CSS0040154 Camellia sinensis var. sinensis HOM05D005752 ORTHO05D006959 1.4e-57 226.9 209 65.6
CANSAT80G0630 Cannabis sativa HOM05D005752 ORTHO05D006959 1.4e-57 226.9 207 65.2
Oeu038392.3 Olea europaea HOM05D005752 ORTHO05D006959 1.8e-57 226.5 208 64.4
Sed0024837 Sechium edule HOM05D005752 ORTHO05D006959 2.3e-57 226.1 209 64.1
PSO063G6484 Papaver somniferum HOM05D005752 ORTHO05D006959 3.0e-57 225.7 209 63.6
Duzib205G1872 Durio zibethinus HOM05D005752 ORTHO05D006959 5.2e-57 224.9 207 62.8
Manes.15G187700 Manihot esculenta HOM05D005752 ORTHO05D006959 5.2e-57 224.9 211 64.0
PSO782G4127 Papaver somniferum HOM05D005752 ORTHO05D006959 1.1e-56 223.8 209 63.6
PGR083G1308 Punica granatum HOM05D005752 ORTHO05D006959 1.5e-56 223.4 209 63.6
FvH4_5g27080 Fragaria vesca HOM05D005752 ORTHO05D006959 3.3e-56 222.2 210 63.8
Prupe.1G588300 Prunus persica HOM05D005752 ORTHO05D006959 1.3e-55 220.3 210 63.8
TWI81G0144 Tripterygium wilfordii HOM05D005752 ORTHO05D006959 3.7e-55 218.8 229 58.5
Actinidia06837 Actinidia chinensis HOM05D005752 ORTHO05D006959 4.8e-55 218.4 212 65.6
Gohir.A07G062900 Gossypium hirsutum HOM05D005752 ORTHO05D006959 4.8e-55 218.4 208 61.5
Potri.004G066700 Populus trichocarpa HOM05D005752 ORTHO05D006959 2.4e-54 216.1 217 63.6
Hund06741 Selenicereus undatus HOM05D005752 ORTHO05D006959 1.2e-53 213.8 211 61.6
ATR0124G026 Amborella trichopoda HOM05D005752 ORTHO05D006959 3.5e-53 212.2 209 61.2
Gorai.001G071100 Gossypium raimondii HOM05D005752 ORTHO05D006959 3.5e-53 212.2 207 61.4
Sc10g0008680 Simmondsia chinensis HOM05D005752 ORTHO05D006959 1.0e-52 210.7 212 59.4
arahy.Tifrunner.gnm1.ann1.LY2Y4A Arachis hypogaea HOM05D005752 ORTHO05D006959 1.3e-52 210.3 269 52.8
Gohir.D07G067500 Gossypium hirsutum HOM05D005752 ORTHO05D006959 1.3e-52 210.3 203 61.1
Nitab4.5_0000477g0100 Nicotiana tabacum HOM05D005752 ORTHO05D006959 2.9e-52 209.1 198 63.1
Lj2g0008613 Lotus japonicus HOM05D005752 ORTHO05D006959 6.5e-52 208.0 221 59.7
VMungo0464G0712 Vigna mungo HOM05D005752 ORTHO05D006959 1.1e-51 207.2 245 54.3
arahy.Tifrunner.gnm1.ann1.CL4QH0 Arachis hypogaea HOM05D005752 ORTHO05D006959 1.9e-51 206.5 258 52.3
CAN.G65.61 Capsicum annuum HOM05D005752 ORTHO05D006959 3.2e-51 205.7 215 55.8
Glyma.16G210400 Glycine max HOM05D005752 ORTHO05D006959 4.2e-51 205.3 228 57.9
EL10Ac8g19469 Beta vulgaris HOM05D005752 ORTHO05D006959 5.5e-51 204.9 229 58.1
ECA232G1540 Erigeron canadensis HOM05D005752 ORTHO05D006959 2.1e-50 203.0 209 58.4
Migut.O00287 Erythranthe guttata HOM05D005752 ORTHO05D006959 2.7e-50 202.6 205 61.5
DCAR_023237 Daucus carota HOM05D005752 ORTHO05D006959 8.0e-50 201.1 223 58.3
THA.LOC104812187 Tarenaya hassleriana HOM05D005752 ORTHO05D006959 4.0e-49 198.7 219 57.5
Glyma.09G161000 Glycine max HOM05D005752 ORTHO05D006959 6.8e-49 198.0 229 56.8
BraA07t30622Z Brassica rapa HOM05D005752 ORTHO05D006959 2.6e-48 196.1 223 54.3
Carub.0002s2009 Capsella rubella HOM05D005752 ORTHO05D006959 3.4e-48 195.7 222 58.1
Os02g0637900 Oryza sativa ssp. japonica HOM05D005752 ORTHO05D006959 3.4e-48 195.7 217 56.7
SEGI_37918 Sequoiadendron giganteum HOM05D005752 ORTHO05D006959 4.4e-48 195.3 215 59.1
BcaB03g15052 Brassica carinata HOM05D005752 ORTHO05D006959 5.7e-48 194.9 219 57.5
BcaB03g15707 Brassica carinata HOM05D005752 ORTHO05D006959 5.7e-48 194.9 218 56.9
Nitab4.5_0005315g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 9.7e-48 194.1 195 61.0
AT1G73350 Arabidopsis thaliana HOM05D005752 ORTHO05D006959 2.8e-47 192.6 212 58.0
CDE08G1652 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 2.8e-47 192.6 236 53.0
PGSC0003DMG400015277 Solanum tuberosum HOM05D005752 ORTHO05D006959 2.8e-47 192.6 217 56.7
Zm00001eb185640 Zea mays HOM05D005752 ORTHO05D006959 4.8e-47 191.8 217 56.7
RcHm_v2.0_Chr7g0218081 Rosa chinensis HOM05D005752 ORTHO05D006959 1.8e-46 189.9 109 86.2
A07p39320 Brassica napus HOM05D005752 ORTHO05D006959 7.0e-46 188.0 222 56.3
BraA07t31481Z Brassica rapa HOM05D005752 ORTHO05D006959 7.0e-46 188.0 219 58.0
FAN18G3658 Fragaria x ananassa HOM05D005752 ORTHO05D006959 9.1e-46 187.6 95 97.9
CsaV3_1G005270 Cucumis sativus L. HOM05D005752 ORTHO05D006959 1.6e-45 186.8 96 94.8
FAN08G2690 Fragaria x ananassa HOM05D005752 ORTHO05D006959 2.0e-45 186.4 95 96.8
Sp5g28280 Schrenkiella parvula HOM05D005752 ORTHO05D006959 4.5e-45 185.3 229 54.1
Cc00_g01570 Coffea canephora HOM05D005752 ORTHO05D006959 7.7e-45 184.5 98 93.9
CDE04G3451 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 1.3e-44 183.7 98 92.9
AUR62040639 Chenopodium quinoa HOM05D005752 ORTHO05D006959 1.3e-44 183.7 99 92.9
Pp3c25_5680 Physcomitrium patens HOM05D005752 ORTHO05D006959 1.3e-44 183.7 212 54.7
HPP92_021122 Vanilla planifolia HOM05D005752 ORTHO05D006959 3.8e-44 182.2 95 92.6
Nitab4.5_0009307g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 6.5e-44 181.4 198 56.6
Lsat_1_v5_gn_6_23301 Lactuca sativa HOM05D005752 ORTHO05D006959 1.9e-43 179.9 194 58.8
Lalb_Chr14g0370131 Lupinus albus HOM05D005752 ORTHO05D006959 1.9e-43 179.9 95 93.7
Nn4g25057 Nelumbo nucifera HOM05D005752 ORTHO05D006959 1.9e-43 179.9 105 86.7
Nitab4.5_0008182g0060 Nicotiana tabacum HOM05D005752 ORTHO05D006959 1.9e-43 179.9 197 55.8
HanXRQChr04g0126291 Helianthus annuus HOM05D005752 ORTHO05D006959 1.2e-42 177.2 95 91.6
QL10p031508 Quercus lobata HOM05D005752 ORTHO05D006959 1.6e-42 176.8 143 72.0
Pp3c16_8600 Physcomitrium patens HOM05D005752 ORTHO05D006959 2.1e-42 176.4 212 53.8
Thhalv10019162m.g Eutrema salsugineum HOM05D005752 ORTHO05D006959 1.8e-41 173.3 201 55.7
A07p29840 Brassica napus HOM05D005752 ORTHO05D006959 2.3e-41 172.9 259 46.3
GSVIVG01024240001 Vitis vinifera HOM05D005752 ORTHO05D006959 4.0e-41 172.2 176 61.4
BcaC08g45648 Brassica carinata HOM05D005752 ORTHO05D006959 4.4e-40 168.7 97 88.7
unitig_0.g1238 Utricularia gibba HOM05D000376 ORTHO05D000237 4.4e-40 168.7 201 54.7
QL12p037498 Quercus lobata HOM05D005752 ORTHO05D006959 5.7e-40 168.3 274 46.0
BolC6t38521H Brassica oleracea HOM05D005752 ORTHO05D006959 9.8e-40 167.5 97 87.6
Sabra04G0044500 Salix brachista HOM05D005752 ORTHO05D006959 1.3e-39 167.2 99 89.9
QL10p035764 Quercus lobata HOM05D005752 ORTHO05D006959 1.7e-39 166.8 268 46.6
ClCG04G012440 Citrullus lanatus HOM05D005752 ORTHO05D006959 4.9e-39 165.2 219 49.8
MELO3C001966.2 Cucumis melo HOM05D005752 ORTHO05D006959 2.0e-37 159.8 302 41.7
SalBow5G5648 Salvia bowleyana HOM05D005752 ORTHO05D006959 2.3e-36 156.4 191 52.4
Dinv04371 Davidia involucrata HOM05D005752 ORTHO05D006959 6.6e-36 154.8 169 60.4
SMO232G0035 Selaginella moellendorffii HOM05D005752 ORTHO05D006959 1.1e-35 154.1 198 52.0
Rhsim08G0128600 Rhododendron simsii HOM05D005752 ORTHO05D006959 1.6e-34 150.2 275 43.3
Eucgr.G00948 Eucalyptus grandis HOM05D005752 ORTHO05D006959 6.1e-34 148.3 172 57.6
Thecc.03G073300 Theobroma cacao HOM05D005752 ORTHO05D006959 6.1e-34 148.3 167 56.3
Ah.14g085830 Amaranthus hybridus HOM05D005752 ORTHO05D006959 1.7e-31 140.2 181 53.0
MSTRG.23218 Avicennia marina HOM05D005752 ORTHO05D006959 6.3e-31 138.3 170 55.3
Aa31LG4G3620 Aethionema arabicum HOM05D005752 ORTHO05D006959 4.1e-30 135.6 202 49.0
AUR62041602 Chenopodium quinoa HOM05D005752 ORTHO05D006959 2.7e-29 132.9 107 70.1
Eucgr.J01173 Eucalyptus grandis HOM05D005752 ORTHO05D006959 4.6e-29 132.1 167 53.9
COL.COLO4_38544 Corchorus olitorius HOM05D005752 ORTHO05D006959 1.0e-28 131.0 107 69.2
C06p34060 Brassica napus HOM05D005752 ORTHO05D006959 3.9e-28 129.0 172 50.0
CARHR066400 Cardamine hirsuta HOM05D005752 ORTHO05D006959 6.6e-28 128.3 167 52.7
CBR_g54189 Chara braunii HOM05D005752 ORTHO05D006959 1.1e-27 127.5 121 56.2
AL2G33120 Arabidopsis lyrata HOM05D005752 ORTHO05D006959 1.5e-27 127.1 179 51.4
Phvul.004G136400 Phaseolus vulgaris HOM05D005752 ORTHO05D006959 1.5e-27 127.1 185 52.4
MBI03_g11902_MAGBIO Magnolia biondii HOM05D005752 ORTHO05D006959 1.2e-24 117.5 193 43.0
MD06G1000100 Malus domestica HOM05D005752 ORTHO05D006959 1.2e-24 117.5 63 88.9
Mapoly0033s0045 Marchantia polymorpha HOM05D005752 ORTHO05D006959 2.9e-23 112.8 171 50.3
vmacro17761 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 4.9e-23 112.1 181 41.4
PGSC0003DMG400026968 Solanum tuberosum HOM05D005752 ORTHO05D006959 1.2e-21 107.5 226 37.6
Sopen03g029760 Solanum pennellii HOM05D005752 ORTHO05D006959 1.3e-20 104.0 55 92.7
Medtr6g068990 Medicago truncatula HOM05D005752 ORTHO05D006959 1.1e-19 100.9 181 43.1
Ca_25284_v3 Cicer arietinum L. HOM05D005752 ORTHO05D006959 4.3e-19 99.0 231 38.1
CAN.G861.19 Capsicum annuum HOM05D005752 ORTHO05D006959 1.6e-18 97.1 204 40.2
C06p47550 Brassica napus HOM05D005752 ORTHO05D006959 8.3e-15 84.7 118 50.8
BolC6t39793H Brassica oleracea HOM05D005752 ORTHO05D006959 8.3e-15 84.7 118 50.8
GSVIVG01024241001 Vitis vinifera HOM05D005752 ORTHO05D006959 1.4e-14 84.0 40 95.0
AL2G33130 Arabidopsis lyrata HOM05D005752 ORTHO05D006959 9.5e-11 71.2 41 87.8
CsaV3_1G005260 Cucumis sativus L. HOM05D005752 ORTHO05D006959 9.5e-11 71.2 88 52.3
vmacro17785 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 1.6e-10 70.5 47 76.6
AagrBONN_evm.TU.Sc2ySwM_368.1654 Anthoceros agrestis HOM05D005752 ORTHO05D006959 2.8e-10 69.7 198 34.8
BcaC08g46759 Brassica carinata HOM05D005752 ORTHO05D006959 4.7e-10 68.9 275 33.5
Solyc06g150131.1 Solanum lycopersicum HOM05D005752 ORTHO05D006959 6.2e-10 68.6 171 36.3
Psat1g118960 Pisum sativum HOM05D005752 ORTHO05D006959 1.4e-09 67.4 148 42.6
SGA_v2.0_scaffold21G09651 Striga asiatica HOM05D005752 ORTHO05D006959 4.4e-08 62.4 40 72.5
PGSC0003DMG400035697 Solanum tuberosum HOM05D005752 ORTHO05D006959 5.8e-08 62.0 35 88.6
FAN13G1309 Fragaria x ananassa HOM05D005752 ORTHO05D006959 1.1e-06 57.8 92 46.7
SGA_v2.0_scaffold25G10718 Striga asiatica HOM05D005752 ORTHO05D006959 1.9e-06 57.0 91 47.3
Cpa.g.sc628.6 Carica papaya HOM05D005752 ORTHO05D006959 4.1e-06 55.8 97 46.4


User provided reference genes

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