Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017796 Carpinus fangiana HOM05D000317 ORTHO05D000032 4.9e-67 257.7 132 100.0
Cfa012523 Carpinus fangiana HOM05D000317 ORTHO05D000032 3.6e-62 241.5 129 96.1
Haze_08141 Corylus avellana HOM05D000317 ORTHO05D000032 3.2e-42 175.3 134 79.1
CiPaw.12G067800 Carya illinoinensis HOM05D000317 ORTHO05D000032 5.5e-42 174.5 132 73.5
CiPaw.11G098000 Carya illinoinensis HOM05D000317 ORTHO05D000032 1.1e-39 166.8 133 71.4
QL12p001426 Quercus lobata HOM05D000317 ORTHO05D000032 2.8e-38 162.2 137 70.8
Dinv28999 Davidia involucrata HOM05D000317 ORTHO05D000032 9.0e-37 157.1 137 67.9
Duzib205G0608 Durio zibethinus HOM05D000317 ORTHO05D000032 3.8e-35 151.8 141 63.8
Duzib068G0674 Durio zibethinus HOM05D000317 ORTHO05D000032 1.1e-34 150.2 137 63.5
Thecc.03G309600 Theobroma cacao HOM05D000317 ORTHO05D000032 2.5e-34 149.1 137 64.2
Dinv25254 Davidia involucrata HOM05D000317 ORTHO05D000032 1.2e-33 146.7 131 66.4
Potri.001G137600 Populus trichocarpa HOM05D000317 ORTHO05D000032 2.7e-33 145.6 144 64.6
Duzib084G1359 Durio zibethinus HOM05D000317 ORTHO05D000032 6.1e-33 144.4 137 63.5
Manes.15G185500 Manihot esculenta HOM05D000317 ORTHO05D000032 1.8e-32 142.9 136 67.6
Sabra01G0106200 Salix brachista HOM05D000317 ORTHO05D000032 5.1e-32 141.4 143 63.6
Atru.chr6.1515 Acer truncatum HOM05D000317 ORTHO05D000032 4.8e-30 134.8 144 59.0
Cpa.g.sc208.13 Carica papaya HOM05D000317 ORTHO05D000032 4.8e-30 134.8 133 59.4
Sabra03G0065000 Salix brachista HOM05D000317 ORTHO05D000032 4.8e-30 134.8 136 62.5
Manes.17G010300 Manihot esculenta HOM05D000317 ORTHO05D000032 1.8e-29 132.9 137 65.0
Phvul.002G137300 Phaseolus vulgaris HOM05D000317 ORTHO05D000032 2.4e-29 132.5 137 59.9
Lj2g0009365 Lotus japonicus HOM05D000317 ORTHO05D000032 3.1e-29 132.1 140 60.0
VMungo1215G1741 Vigna mungo HOM05D000317 ORTHO05D000032 4.1e-29 131.7 138 59.4
Potri.003G096300 Populus trichocarpa HOM05D000317 ORTHO05D000032 5.3e-29 131.3 143 61.5
TPR.G19428 Trifolium pratense HOM05D000317 ORTHO05D000032 5.9e-28 127.9 149 53.0
Lalb_Chr05g0215791 Lupinus albus HOM05D000317 ORTHO05D000032 7.7e-28 127.5 138 59.4
Nn1g00197 Nelumbo nucifera HOM05D000317 ORTHO05D000032 3.2e-26 122.1 132 57.6
Lalb_Chr16g0381111 Lupinus albus HOM05D000317 ORTHO05D000032 1.2e-25 120.2 148 52.0
COL.COLO4_16948 Corchorus olitorius HOM05D000317 ORTHO05D000032 1.6e-25 119.8 158 53.2
Prupe.5G028400 Prunus persica HOM05D000317 ORTHO05D000032 2.1e-25 119.4 154 54.5
Glyma.01G014800 Glycine max HOM05D000317 ORTHO05D000032 4.7e-25 118.2 138 54.3
Eucgr.E00246 Eucalyptus grandis HOM05D000317 ORTHO05D000032 6.1e-25 117.9 147 53.7
TAR636G1843 Trochodendron aralioides HOM05D000317 ORTHO05D000032 7.9e-25 117.5 131 54.2
Eucgr.E00234 Eucalyptus grandis HOM05D000317 ORTHO05D000032 1.0e-24 117.1 147 54.4
Glyma.09G207300 Glycine max HOM05D000317 ORTHO05D000032 1.4e-24 116.7 152 51.3
TAR375G0136 Trochodendron aralioides HOM05D000317 ORTHO05D000032 1.4e-24 116.7 131 55.7
Gohir.D12G208900 Gossypium hirsutum HOM05D000317 ORTHO05D000032 1.8e-24 116.3 141 53.9
Gorai.008G224400 Gossypium raimondii HOM05D000317 ORTHO05D000032 1.8e-24 116.3 141 53.9
Nn3g19401 Nelumbo nucifera HOM05D000317 ORTHO05D000032 1.8e-24 116.3 136 55.1
TAR629G0315 Trochodendron aralioides HOM05D000317 ORTHO05D000032 5.1e-24 114.8 130 56.9
Gohir.A12G206500 Gossypium hirsutum HOM05D000317 ORTHO05D000032 1.1e-23 113.6 142 53.5
Gohir.D08G174900 Gossypium hirsutum HOM05D000317 ORTHO05D000032 1.1e-23 113.6 146 52.7
MSTRG.13738 Avicennia marina HOM05D000317 ORTHO05D000032 2.0e-23 112.8 139 51.1
Gorai.004G182500 Gossypium raimondii HOM05D000317 ORTHO05D000032 5.7e-23 111.3 146 52.1
Gohir.A08G154032 Gossypium hirsutum HOM05D000317 ORTHO05D000032 2.2e-22 109.4 146 50.7
Hma1.2p1_1027F.1_g249500 Hydrangea macrophylla HOM05D000317 ORTHO05D000032 3.7e-22 108.6 145 53.1
CSS0001412 Camellia sinensis var. sinensis HOM05D000317 ORTHO05D000032 8.2e-22 107.5 134 53.0
Medtr5g029470 Medicago truncatula HOM05D000317 ORTHO05D000032 1.1e-21 107.1 148 51.4
TWI60G1722 Tripterygium wilfordii HOM05D000317 ORTHO05D000032 1.8e-21 106.3 148 52.0
CSS0021269 Camellia sinensis var. sinensis HOM05D000317 ORTHO05D000032 5.3e-21 104.8 136 58.1
Lalb_Chr09g0325521 Lupinus albus HOM05D000317 ORTHO05D000032 5.3e-21 104.8 134 56.0
Rhsim11G0020700 Rhododendron simsii HOM05D000317 ORTHO05D000032 6.9e-21 104.4 138 51.4
Peaxi162Scf00185g00095 Petunia axillaris HOM05D000317 ORTHO05D000032 1.5e-20 103.2 131 45.8
RcHm_v2.0_Chr7g0211731 Rosa chinensis HOM05D000317 ORTHO05D000032 1.5e-20 103.2 159 49.7
Actinidia01321 Actinidia chinensis HOM05D000317 ORTHO05D000032 5.9e-20 101.3 154 44.8
vmacro14196 Vaccinium macrocarpon HOM05D000317 ORTHO05D000032 5.9e-20 101.3 138 50.0
Aqoxy3G02188 Aquilegia oxysepala HOM05D000317 ORTHO05D000032 7.7e-20 100.9 137 51.1
FAN18G1634 Fragaria x ananassa HOM05D000317 ORTHO05D000032 1.0e-19 100.5 149 49.7
Rhsim07G0131500 Rhododendron simsii HOM05D000317 ORTHO05D000032 1.0e-19 100.5 147 47.6
vmacro00285 Vaccinium macrocarpon HOM05D000317 ORTHO05D000032 1.7e-19 99.8 136 47.1
Nitab4.5_0001632g0010 Nicotiana tabacum HOM05D000317 ORTHO05D000032 2.9e-19 99.0 145 45.5
TWI81G0528 Tripterygium wilfordii HOM05D000317 ORTHO05D000032 2.9e-19 99.0 143 49.7
Actinidia14782 Actinidia chinensis HOM05D000317 ORTHO05D000032 8.5e-19 97.4 129 46.5
FvH4_5g22990 Fragaria vesca HOM05D000317 ORTHO05D000032 1.1e-18 97.1 161 47.8
FAN18G4490 Fragaria x ananassa HOM05D000317 ORTHO05D000032 1.1e-18 97.1 161 47.8
Nitab4.5_0000109g0060 Nicotiana tabacum HOM05D000317 ORTHO05D000032 1.1e-18 97.1 139 52.5
SHI07422 Sapria himalayana HOM05D000317 ORTHO05D000032 1.4e-18 96.7 133 48.1
Eucgr.D02225 Eucalyptus grandis HOM05D000317 ORTHO05D000032 3.2e-18 95.5 135 46.7
FAN13G3098 Fragaria x ananassa HOM05D000317 ORTHO05D000032 5.5e-18 94.7 161 47.8
Lj8C309T6 Lonicera japonica HOM05D000317 ORTHO05D000032 5.5e-18 94.7 146 48.6
FAN08G2613 Fragaria x ananassa HOM05D000317 ORTHO05D000032 9.4e-18 94.0 164 47.0
FAN04G1143 Fragaria x ananassa HOM05D000317 ORTHO05D000032 1.6e-17 93.2 164 45.7
MSTRG.12174 Avicennia marina HOM05D000317 ORTHO05D000032 2.1e-17 92.8 132 49.2
Medtr8g066310 Medicago truncatula HOM05D000317 ORTHO05D000032 2.1e-17 92.8 139 46.8
Actinidia18127 Actinidia chinensis HOM05D000317 ORTHO05D000032 3.6e-17 92.0 76 67.1
Ciclev10001292m.g Citrus clementina HOM05D000317 ORTHO05D000032 4.7e-17 91.7 84 65.5
MD06G1026200 Malus domestica HOM05D000317 ORTHO05D000032 4.7e-17 91.7 138 50.0
Psat2g138760 Pisum sativum HOM05D000317 ORTHO05D000032 4.7e-17 91.7 172 41.3
MBI04_g32198_MAGBIO Magnolia biondii HOM05D000317 ORTHO05D000032 8.0e-17 90.9 131 49.6
Cc08_g03290 Coffea canephora HOM05D000317 ORTHO05D000032 1.4e-16 90.1 80 65.0
Peaxi162Scf00045g00221 Petunia axillaris HOM05D000317 ORTHO05D000032 1.8e-16 89.7 136 48.5
THA.LOC104798490 Tarenaya hassleriana HOM05D000317 ORTHO05D000032 3.0e-16 89.0 154 44.8
CDE03G0249 Ceratophyllum demersum HOM05D000317 ORTHO05D000032 6.7e-16 87.8 129 43.4
GSVIVG01013085001 Vitis vinifera HOM05D000317 ORTHO05D000032 6.7e-16 87.8 133 48.1
Nitab4.5_0002778g0100 Nicotiana tabacum HOM05D000317 ORTHO05D000032 4.4e-15 85.1 103 51.5
MD16G1279800 Malus domestica HOM05D000317 ORTHO05D000032 7.4e-15 84.3 141 48.9
CDE11G1153 Ceratophyllum demersum HOM05D000317 ORTHO05D000032 9.7e-15 84.0 129 41.9
Hma1.2p1_2886F.1_g329910 Hydrangea macrophylla HOM05D000317 ORTHO05D000032 9.7e-15 84.0 131 44.3
Nitab4.5_0000556g0220 Nicotiana tabacum HOM05D000317 ORTHO05D000032 1.7e-14 83.2 103 51.5
TPR.G3355 Trifolium pratense HOM05D000317 ORTHO05D000032 1.7e-14 83.2 151 41.7
CARHR031610 Cardamine hirsuta HOM05D000317 ORTHO05D000032 3.7e-14 82.0 149 47.7
CDE06G2428 Ceratophyllum demersum HOM05D000317 ORTHO05D000032 3.7e-14 82.0 98 49.0
PSO063G4639 Papaver somniferum HOM05D000317 ORTHO05D000032 3.7e-14 82.0 103 50.5
PSO782G1527 Papaver somniferum HOM05D000317 ORTHO05D000032 3.7e-14 82.0 116 47.4
BcaC05g27262 Brassica carinata HOM05D000317 ORTHO05D000032 6.3e-14 81.3 137 43.8
C05p31700 Brassica napus HOM05D000317 ORTHO05D000032 6.3e-14 81.3 137 43.8
BolC5t31895H Brassica oleracea HOM05D000317 ORTHO05D000032 6.3e-14 81.3 137 43.8
Carub.0001s3057 Capsella rubella HOM05D000317 ORTHO05D000032 6.3e-14 81.3 150 46.7
Sed0022531 Sechium edule HOM05D000317 ORTHO05D000032 1.4e-13 80.1 147 42.2
AL1G46380 Arabidopsis lyrata HOM05D000317 ORTHO05D000032 1.8e-13 79.7 76 63.2
A09p33900 Brassica napus HOM05D000317 ORTHO05D000032 3.1e-13 79.0 137 43.8
BraA09t38937Z Brassica rapa HOM05D000317 ORTHO05D000032 3.1e-13 79.0 137 43.8
Sed0026002 Sechium edule HOM05D000317 ORTHO05D000032 3.1e-13 79.0 161 40.4
EL10Ac5g12020 Beta vulgaris HOM05D000317 ORTHO05D000032 4.1e-13 78.6 132 50.0
arahy.Tifrunner.gnm1.ann1.6E07G6 Arachis hypogaea HOM05D000317 ORTHO05D000032 5.3e-13 78.2 141 48.2
arahy.Tifrunner.gnm1.ann1.P7Z227 Arachis hypogaea HOM05D000317 ORTHO05D000032 5.3e-13 78.2 141 48.2
CAN.G474.20 Capsicum annuum HOM05D000317 ORTHO05D000032 5.3e-13 78.2 140 45.7
BcaC05g27897 Brassica carinata HOM05D000317 ORTHO05D000032 7.0e-13 77.8 83 54.2
AT1G32240 Arabidopsis thaliana HOM05D000317 ORTHO05D000032 9.1e-13 77.4 151 43.0
BcaC07g37626 Brassica carinata HOM05D000317 ORTHO05D000032 9.1e-13 77.4 54 72.2
BolC8t47995H Brassica oleracea HOM05D000317 ORTHO05D000032 9.1e-13 77.4 54 72.2
Sp1g27920 Schrenkiella parvula HOM05D000317 ORTHO05D000032 9.1e-13 77.4 54 72.2
THA.LOC104811356 Tarenaya hassleriana HOM05D000317 ORTHO05D000032 1.6e-12 76.6 145 42.8
THA.LOC104814418 Tarenaya hassleriana HOM05D000317 ORTHO05D000032 1.6e-12 76.6 145 42.8
Peaxi162Scf00170g00063 Petunia axillaris HOM05D000317 ORTHO05D000032 2.0e-12 76.3 134 41.8
A05p25090 Brassica napus HOM05D000317 ORTHO05D000032 2.6e-12 75.9 54 70.4
BraA05t21391Z Brassica rapa HOM05D000317 ORTHO05D000032 2.6e-12 75.9 54 70.4
HanXRQChr06g0172741 Helianthus annuus HOM05D000317 ORTHO05D000032 2.6e-12 75.9 138 40.6
Thhalv10007844m.g Eutrema salsugineum HOM05D000317 ORTHO05D000032 4.5e-12 75.1 146 42.5
CDE02G4480 Ceratophyllum demersum HOM05D000317 ORTHO05D000032 5.9e-12 74.7 130 41.5
PGR042G2955 Punica granatum HOM05D000317 ORTHO05D000032 5.9e-12 74.7 88 52.3
VMungo0251G0631 Vigna mungo HOM05D000317 ORTHO05D000032 1.0e-11 73.9 74 55.4
BcaC05g27898 Brassica carinata HOM05D000317 ORTHO05D000032 1.3e-11 73.6 84 52.4
C05p39050 Brassica napus HOM05D000317 ORTHO05D000032 1.3e-11 73.6 84 52.4
BolC5t32642H Brassica oleracea HOM05D000317 ORTHO05D000032 1.3e-11 73.6 84 52.4
Lsat_1_v5_gn_3_18021 Lactuca sativa HOM05D000317 ORTHO05D000032 1.3e-11 73.6 145 44.8
Oeu017074.1 Olea europaea HOM05D000317 ORTHO05D000032 1.3e-11 73.6 99 53.5
THA.LOC104812758 Tarenaya hassleriana HOM05D000317 ORTHO05D000032 1.3e-11 73.6 132 40.2
GSVIVG01024383001 Vitis vinifera HOM05D000317 ORTHO05D000032 1.3e-11 73.6 134 40.3
CAN.G4378.1 Capsicum annuum HOM05D000317 ORTHO05D000032 3.8e-11 72.0 139 43.9
Phvul.003G283000 Phaseolus vulgaris HOM05D000317 ORTHO05D000032 3.8e-11 72.0 130 43.8
HanXRQChr17g0538151 Helianthus annuus HOM05D000317 ORTHO05D000032 8.5e-11 70.9 155 36.8
MELO3C003436.2 Cucumis melo HOM05D000317 ORTHO05D000032 1.1e-10 70.5 163 37.4
HPP92_014665 Vanilla planifolia HOM05D000317 ORTHO05D000032 1.1e-10 70.5 86 50.0
HPP92_014696 Vanilla planifolia HOM05D000317 ORTHO05D000032 1.1e-10 70.5 86 50.0
PGSC0003DMG400014803 Solanum tuberosum HOM05D000317 ORTHO05D000032 1.9e-10 69.7 90 54.4
Aa31LG2G13760 Aethionema arabicum HOM05D000317 ORTHO05D000032 3.2e-10 68.9 82 59.8
ClCG09G011660 Citrullus lanatus HOM05D000317 ORTHO05D000032 3.2e-10 68.9 179 35.8
Lsat_1_v5_gn_6_3581 Lactuca sativa HOM05D000317 ORTHO05D000032 3.2e-10 68.9 138 42.0
PGR031G0812 Punica granatum HOM05D000317 ORTHO05D000032 3.2e-10 68.9 130 40.0
Sed0000602 Sechium edule HOM05D000317 ORTHO05D000032 3.2e-10 68.9 146 40.4
DCAR_004273 Daucus carota HOM05D000317 ORTHO05D000032 9.4e-10 67.4 125 44.8
Psat4g122240 Pisum sativum HOM05D000317 ORTHO05D000032 1.6e-09 66.6 138 39.1
Solyc08g076400.3 Solanum lycopersicum HOM05D000317 ORTHO05D000032 2.1e-09 66.2 98 48.0
BcaB07g32904 Brassica carinata HOM05D000317 ORTHO05D000032 2.7e-09 65.9 52 69.2
PGSC0003DMG400018472 Solanum tuberosum HOM05D000317 ORTHO05D000032 2.7e-09 65.9 134 41.8
CsaV3_3G048880 Cucumis sativus L. HOM05D000317 ORTHO05D000032 3.6e-09 65.5 164 37.2
Migut.E00748 Erythranthe guttata HOM05D000317 ORTHO05D000032 3.6e-09 65.5 138 39.9
HanXRQChr13g0396311 Helianthus annuus HOM05D000317 ORTHO05D000032 1.4e-08 63.5 139 41.7
HPP92_014849 Vanilla planifolia HOM05D000317 ORTHO05D000032 4.0e-08 62.0 73 49.3
ECA246G0064 Erigeron canadensis HOM05D000317 ORTHO05D000032 8.8e-08 60.8 155 40.0
Solyc08g005260.2 Solanum lycopersicum HOM05D000317 ORTHO05D000032 1.2e-07 60.5 105 42.9
Hund11189 Selenicereus undatus HOM05D000317 ORTHO05D000032 7.5e-07 57.8 93 45.2
Sopen06g021670 Solanum pennellii HOM05D000317 ORTHO05D000032 9.7e-07 57.4 136 38.2
Lsat_1_v5_gn_6_81281 Lactuca sativa HOM05D000317 ORTHO05D000032 1.3e-06 57.0 127 37.8
MELO3C027103.2 Cucumis melo HOM05D000317 ORTHO05D000032 1.7e-06 56.6 143 39.9
PGSC0003DMG400016767 Solanum tuberosum HOM05D000317 ORTHO05D000032 2.8e-06 55.8 134 38.8
CAN.G137.8 Capsicum annuum HOM05D000317 ORTHO05D000032 4.8e-06 55.1 131 36.6
DCAR_020413 Daucus carota HOM05D000317 ORTHO05D000032 4.8e-06 55.1 155 36.1
Ah.12g055460 Amaranthus hybridus HOM05D000317 ORTHO05D000032 8.2e-06 54.3 79 45.6


User provided reference genes

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