Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017755 Carpinus fangiana HOM05D005454 ORTHO05D006781 6.5e-54 213.8 105 100.0
Haze_01788 Corylus avellana HOM05D005454 ORTHO05D006781 7.0e-32 140.6 68 100.0
Haze_08480 Corylus avellana HOM05D005454 ORTHO05D006781 9.1e-32 140.2 68 98.5
Haze_18487 Corylus avellana HOM05D005454 ORTHO05D006781 2.0e-31 139.0 67 100.0
COL.COLO4_19518 Corchorus olitorius HOM05D005454 ORTHO05D006781 1.6e-28 129.4 68 88.2
Thecc.02G245200 Theobroma cacao HOM05D005454 ORTHO05D006781 2.3e-27 125.6 68 83.8
Gohir.A02G014000 Gossypium hirsutum HOM05D005454 ORTHO05D006781 3.0e-27 125.2 68 82.4
CiPaw.15G112600 Carya illinoinensis HOM05D005454 ORTHO05D006781 5.2e-27 124.4 91 64.8
Gohir.D01G133900 Gossypium hirsutum HOM05D005454 ORTHO05D006781 5.2e-27 124.4 68 82.4
Gorai.002G165600 Gossypium raimondii HOM05D005454 ORTHO05D006781 5.2e-27 124.4 68 82.4
CiPaw.15G112200 Carya illinoinensis HOM05D005454 ORTHO05D006781 8.8e-27 123.6 68 82.4
CiPaw.15G112400 Carya illinoinensis HOM05D005454 ORTHO05D006781 2.6e-26 122.1 68 80.9
Duzib251G0225 Durio zibethinus HOM05D005454 ORTHO05D006781 4.4e-26 121.3 68 79.4
Duzib248G0167 Durio zibethinus HOM05D005454 ORTHO05D006781 5.7e-26 120.9 68 80.9
Potri.008G081400 Populus trichocarpa HOM05D005454 ORTHO05D006781 5.7e-26 120.9 68 79.4
QL04p094645 Quercus lobata HOM05D005454 ORTHO05D006781 2.2e-25 119.0 68 79.4
QL04p094846 Quercus lobata HOM05D005454 ORTHO05D006781 2.2e-25 119.0 68 79.4
TWI59G0830 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 2.2e-25 119.0 68 77.9
CAN.G710.29 Capsicum annuum HOM05D005454 ORTHO05D006781 3.7e-25 118.2 68 77.9
Sabra10G0134500 Salix brachista HOM05D005454 ORTHO05D006781 3.7e-25 118.2 68 77.9
Atru.chr1.44 Acer truncatum HOM05D005454 ORTHO05D006781 4.8e-25 117.9 68 76.5
Gohir.A03G171875 Gossypium hirsutum HOM05D005454 ORTHO05D006781 8.2e-25 117.1 68 79.4
TWI38G1327 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 8.2e-25 117.1 68 76.5
BcaC08g45360 Brassica carinata HOM05D005454 ORTHO05D006781 1.1e-24 116.7 68 73.5
A07p27170 Brassica napus HOM05D005454 ORTHO05D006781 1.1e-24 116.7 68 73.5
C06p29920 Brassica napus HOM05D005454 ORTHO05D006781 1.1e-24 116.7 68 73.5
BraA07t30361Z Brassica rapa HOM05D005454 ORTHO05D006781 1.1e-24 116.7 68 73.5
Hma1.2p1_0151F.1_g066990 Hydrangea macrophylla HOM05D005454 ORTHO05D006781 1.4e-24 116.3 73 71.2
Manes.16G045300 Manihot esculenta HOM05D005454 ORTHO05D006781 1.4e-24 116.3 68 76.5
A07p44460 Brassica napus HOM05D005454 ORTHO05D006781 1.8e-24 115.9 68 73.5
CSS0036802 Camellia sinensis var. sinensis HOM05D005454 ORTHO05D006781 1.8e-24 115.9 80 66.2
Nn7g38402 Nelumbo nucifera HOM05D005454 ORTHO05D006781 1.8e-24 115.9 68 75.0
BolC6t38153H Brassica oleracea HOM05D005454 ORTHO05D006781 2.4e-24 115.5 68 73.5
PGSC0003DMG400011901 Solanum tuberosum HOM05D005454 ORTHO05D006781 2.4e-24 115.5 68 75.0
GSVIVG01036708001 Vitis vinifera HOM05D005454 ORTHO05D006781 2.4e-24 115.5 68 75.0
ClCG02G018790 Citrullus lanatus HOM05D005454 ORTHO05D006781 3.1e-24 115.2 66 78.8
Thhalv10019255m.g Eutrema salsugineum HOM05D005454 ORTHO05D006781 3.1e-24 115.2 68 72.1
BcaB02g07212 Brassica carinata HOM05D005454 ORTHO05D006781 4.1e-24 114.8 68 72.1
BraA07t31955Z Brassica rapa HOM05D005454 ORTHO05D006781 4.1e-24 114.8 68 72.1
Peaxi162Scf00286g00452 Petunia axillaris HOM05D005454 ORTHO05D006781 4.1e-24 114.8 68 75.0
BcaC08g47498 Brassica carinata HOM05D005454 ORTHO05D006781 5.3e-24 114.4 68 72.1
C06p53270 Brassica napus HOM05D005454 ORTHO05D006781 5.3e-24 114.4 68 72.1
BolC6t40345H Brassica oleracea HOM05D005454 ORTHO05D006781 5.3e-24 114.4 68 72.1
TAR626G0894 Trochodendron aralioides HOM05D005454 ORTHO05D006781 7.0e-24 114.0 68 72.1
Cpa.g.sc32.137 Carica papaya HOM05D005454 ORTHO05D006781 9.1e-24 113.6 68 70.6
Solyc09g098140.4 Solanum lycopersicum HOM05D005454 ORTHO05D006781 9.1e-24 113.6 68 73.5
Sopen09g036090 Solanum pennellii HOM05D005454 ORTHO05D006781 9.1e-24 113.6 68 73.5
Ciclev10006210m.g Citrus clementina HOM05D005454 ORTHO05D006781 1.2e-23 113.2 68 70.6
Rhsim04G0003500 Rhododendron simsii HOM05D005454 ORTHO05D006781 1.2e-23 113.2 68 75.0
SGA_v2.0_scaffold186G40175 Striga asiatica HOM05D005454 ORTHO05D006781 1.6e-23 112.8 68 75.0
Oeu029453.1 Olea europaea HOM05D005454 ORTHO05D006781 2.7e-23 112.1 68 72.1
Actinidia00854 Actinidia chinensis HOM05D005454 ORTHO05D006781 3.5e-23 111.7 68 70.6
CANSAT56G0738 Cannabis sativa HOM05D005454 ORTHO05D006781 3.5e-23 111.7 68 69.1
CANSAT56G1199 Cannabis sativa HOM05D005454 ORTHO05D006781 3.5e-23 111.7 68 69.1
Migut.M01498 Erythranthe guttata HOM05D005454 ORTHO05D006781 4.5e-23 111.3 67 71.6
PGR102G3369 Punica granatum HOM05D005454 ORTHO05D006781 4.5e-23 111.3 68 70.6
Sabra08G0060600 Salix brachista HOM05D005454 ORTHO05D006781 4.5e-23 111.3 68 72.1
Sed0024280 Sechium edule HOM05D005454 ORTHO05D006781 4.5e-23 111.3 68 72.1
unitig_32.g11075 Utricularia gibba HOM05D005454 ORTHO05D006781 4.5e-23 111.3 68 69.1
Carub.0002s2625 Capsella rubella HOM05D005454 ORTHO05D006781 5.9e-23 110.9 68 70.6
Nn7g38396 Nelumbo nucifera HOM05D005454 ORTHO05D006781 5.9e-23 110.9 65 75.4
Nitab4.5_0004200g0060 Nicotiana tabacum HOM05D005454 ORTHO05D006781 5.9e-23 110.9 68 70.6
Nitab4.5_0006630g0030 Nicotiana tabacum HOM05D005454 ORTHO05D006781 5.9e-23 110.9 68 70.6
Aa31LG4G1640 Aethionema arabicum HOM05D005454 ORTHO05D006781 7.7e-23 110.5 68 69.1
Prupe.4G126700 Prunus persica HOM05D005454 ORTHO05D006781 1.0e-22 110.2 67 73.1
vmacro09764 Vaccinium macrocarpon HOM05D005454 ORTHO05D006781 1.3e-22 109.8 68 72.1
Cc00_g09040 Coffea canephora HOM05D005454 ORTHO05D006781 1.7e-22 109.4 68 67.6
THA.LOC104808143 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 2.2e-22 109.0 68 70.6
Os02g0495900 Oryza sativa ssp. japonica HOM05D005454 ORTHO05D006781 2.9e-22 108.6 68 70.6
THA.LOC104812391 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 2.9e-22 108.6 68 70.6
Zm00001eb241290 Zea mays HOM05D005454 ORTHO05D006781 2.9e-22 108.6 68 72.1
Eucgr.F04477 Eucalyptus grandis HOM05D005454 ORTHO05D006781 3.8e-22 108.2 68 72.1
SalBow8G4406 Salvia bowleyana HOM05D005454 ORTHO05D006781 3.8e-22 108.2 65 72.3
SalBow8G5040 Salvia bowleyana HOM05D005454 ORTHO05D006781 3.8e-22 108.2 65 72.3
HanXRQChr13g0408901 Helianthus annuus HOM05D005454 ORTHO05D006781 6.5e-22 107.5 68 69.1
HanXRQChr13g0408931 Helianthus annuus HOM05D005454 ORTHO05D006781 6.5e-22 107.5 68 69.1
AT1G79390 Arabidopsis thaliana HOM05D005454 ORTHO05D006781 1.1e-21 106.7 68 66.2
CsaV3_6G013400 Cucumis sativus L. HOM05D005454 ORTHO05D006781 1.1e-21 106.7 68 69.1
MD10G1217600 Malus domestica HOM05D005454 ORTHO05D006781 1.1e-21 106.7 67 71.6
Glyma.01G216400 Glycine max HOM05D005454 ORTHO05D006781 1.5e-21 106.3 59 79.7
Glyma.11G026500 Glycine max HOM05D005454 ORTHO05D006781 1.9e-21 105.9 59 78.0
arahy.Tifrunner.gnm1.ann1.DLUG3E Arachis hypogaea HOM05D005454 ORTHO05D006781 3.2e-21 105.1 58 79.3
arahy.Tifrunner.gnm1.ann1.TLTS2V Arachis hypogaea HOM05D005454 ORTHO05D006781 3.2e-21 105.1 58 79.3
Lsat_1_v5_gn_5_184081 Lactuca sativa HOM05D005454 ORTHO05D006781 3.2e-21 105.1 68 66.2
Phvul.002G154100 Phaseolus vulgaris HOM05D005454 ORTHO05D006781 3.2e-21 105.1 59 78.0
MSTRG.16083 Avicennia marina HOM05D005454 ORTHO05D006781 9.4e-21 103.6 61 75.4
Aqoxy1G01376 Aquilegia oxysepala HOM05D005454 ORTHO05D006781 1.2e-20 103.2 66 68.2
AL2G40000 Arabidopsis lyrata HOM05D005454 ORTHO05D006781 1.2e-20 103.2 65 66.2
CARHR073040 Cardamine hirsuta HOM05D005454 ORTHO05D006781 1.2e-20 103.2 59 78.0
HPP92_015989 Vanilla planifolia HOM05D005454 ORTHO05D006781 1.6e-20 102.8 68 67.6
MELO3C019617.2 Cucumis melo HOM05D005454 ORTHO05D006781 2.1e-20 102.4 67 70.1
VMungo1215G2509 Vigna mungo HOM05D005454 ORTHO05D006781 2.7e-20 102.1 59 76.3
RcHm_v2.0_Chr5g0023201 Rosa chinensis HOM05D005454 ORTHO05D006781 4.7e-20 101.3 68 67.6
Ah.02g115510 Amaranthus hybridus HOM05D005454 ORTHO05D006781 6.1e-20 100.9 66 65.2
Psat4g141200 Pisum sativum HOM05D005454 ORTHO05D006781 6.1e-20 100.9 59 74.6
Dinv42456 Davidia involucrata HOM05D005454 ORTHO05D006781 8.0e-20 100.5 59 74.6
Lalb_Chr03g0031911 Lupinus albus HOM05D005454 ORTHO05D006781 8.0e-20 100.5 59 76.3
Hund10936 Selenicereus undatus HOM05D005454 ORTHO05D006781 2.3e-19 99.0 63 65.1
ATR0820G041 Amborella trichopoda HOM05D005454 ORTHO05D006781 4.0e-19 98.2 68 61.8
Lj3g0001328 Lotus japonicus HOM05D005454 ORTHO05D006781 4.0e-19 98.2 59 72.9
TPR.G8202 Trifolium pratense HOM05D005454 ORTHO05D006781 4.0e-19 98.2 59 71.2
Ca_26272_v3 Cicer arietinum L. HOM05D005454 ORTHO05D006781 5.2e-19 97.8 59 71.2
Medtr8g447300 Medicago truncatula HOM05D005454 ORTHO05D006781 6.8e-19 97.4 59 71.2
PSO675G7587 Papaver somniferum HOM05D005454 ORTHO05D006781 6.8e-19 97.4 65 64.6
FvH4_3g13970 Fragaria vesca HOM05D005454 ORTHO05D006781 1.2e-18 96.7 68 63.2
FAN11G3450 Fragaria x ananassa HOM05D005454 ORTHO05D006781 1.2e-18 96.7 68 63.2
FAN16G0850 Fragaria x ananassa HOM05D005454 ORTHO05D006781 1.2e-18 96.7 68 63.2
FAN21G1174 Fragaria x ananassa HOM05D005454 ORTHO05D006781 1.2e-18 96.7 68 63.2
Sc18g0003140 Simmondsia chinensis HOM05D005454 ORTHO05D006781 2.0e-18 95.9 60 66.7
ECA240G0828 Erigeron canadensis HOM05D005454 ORTHO05D006781 2.6e-18 95.5 68 61.8
EL10Ac5g12502 Beta vulgaris HOM05D005454 ORTHO05D006781 5.7e-18 94.4 66 62.1
AUR62030518 Chenopodium quinoa HOM05D005454 ORTHO05D006781 5.7e-18 94.4 66 65.2
AUR62030774 Chenopodium quinoa HOM05D005454 ORTHO05D006781 7.5e-18 94.0 66 63.6
FAN25G3791 Fragaria x ananassa HOM05D005454 ORTHO05D006781 2.2e-17 92.4 68 60.3
MD05G1239400 Malus domestica HOM05D005454 ORTHO05D006781 2.2e-17 92.4 57 70.2
MBI13_g09219_MAGBIO Magnolia biondii HOM05D005454 ORTHO05D006781 1.8e-16 89.4 74 58.1
SEGI_00588 Sequoiadendron giganteum HOM05D005454 ORTHO05D006781 8.5e-14 80.5 66 51.5
RcHm_v2.0_Chr5g0023191 Rosa chinensis HOM05D005454 ORTHO05D006781 5.5e-13 77.8 69 53.6
AagrBONN_evm.TU.Sc2ySwM_117.1988 Anthoceros agrestis HOM05D005454 ORTHO05D006781 3.7e-09 65.1 67 46.3
Pp3c27_5100 Physcomitrium patens HOM05D005454 ORTHO05D006781 2.4e-08 62.4 68 42.6
SGA_v2.0_scaffold29G12256 Striga asiatica HOM05D005454 ORTHO05D006781 2.7e-07 58.9 46 56.5
DCAR_013713 Daucus carota HOM05D005454 ORTHO05D006781 2.3e-06 55.8 57 47.4
Mapoly0011s0156 Marchantia polymorpha HOM05D005454 ORTHO05D006781 6.6e-06 54.3 68 35.3
Gohir.A04G138000 Gossypium hirsutum HOM05D005454 ORTHO05D006781 8.6e-06 53.9 54 51.9


User provided reference genes

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