Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017721 Carpinus fangiana HOM05D005516 ORTHO05D006713 1.2e-81 306.6 165 100.0
Haze_20402 Corylus avellana HOM05D005516 ORTHO05D006713 6.1e-75 284.3 165 95.2
CiPaw.09G166400 Carya illinoinensis HOM05D005516 ORTHO05D006713 4.1e-55 218.4 146 76.7
Potri.019G040400 Populus trichocarpa HOM05D005516 ORTHO05D006713 4.0e-50 201.8 172 73.3
Duzib106G1703 Durio zibethinus HOM05D005516 ORTHO05D006713 2.4e-47 192.6 167 65.9
Thecc.05G241500 Theobroma cacao HOM05D005516 ORTHO05D006713 5.4e-47 191.4 170 71.2
QL07p017420 Quercus lobata HOM05D005516 ORTHO05D006713 9.2e-47 190.7 167 71.3
Potri.013G066000 Populus trichocarpa HOM05D005516 ORTHO05D006713 8.6e-45 184.1 167 73.1
Ciclev10022543m.g Citrus clementina HOM05D005516 ORTHO05D006713 3.3e-44 182.2 175 66.9
Manes.08G152800 Manihot esculenta HOM05D005516 ORTHO05D006713 5.6e-44 181.4 169 69.2
Dinv13791 Davidia involucrata HOM05D005516 ORTHO05D006713 1.6e-43 179.9 162 66.7
Duzib128G1828 Durio zibethinus HOM05D005516 ORTHO05D006713 1.6e-43 179.9 162 68.5
Hma1.2p1_0526F.1_g172910 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 2.1e-43 179.5 151 70.2
Sabra13G0057700 Salix brachista HOM05D005516 ORTHO05D006713 1.1e-42 177.2 148 70.3
ClCG04G004680 Citrullus lanatus HOM05D005516 ORTHO05D006713 1.8e-42 176.4 147 68.0
Sed0005064 Sechium edule HOM05D005516 ORTHO05D006713 1.8e-42 176.4 162 67.3
CsaV3_4G031610 Cucumis sativus L. HOM05D005516 ORTHO05D006713 2.3e-42 176.0 164 70.1
Duzib177G0157 Durio zibethinus HOM05D005516 ORTHO05D006713 1.2e-41 173.7 167 68.9
Lalb_Chr14g0364851 Lupinus albus HOM05D005516 ORTHO05D006713 3.4e-41 172.2 146 69.2
CANSAT78G1214 Cannabis sativa HOM05D005516 ORTHO05D006713 7.6e-41 171.0 156 65.4
GSVIVG01029962001 Vitis vinifera HOM05D005516 ORTHO05D006713 1.3e-40 170.2 140 75.7
Eucgr.K01534 Eucalyptus grandis HOM05D005516 ORTHO05D006713 2.9e-40 169.1 174 62.1
COL.COLO4_20092 Corchorus olitorius HOM05D005516 ORTHO05D006713 3.8e-40 168.7 105 78.1
TWI60G0181 Tripterygium wilfordii HOM05D005516 ORTHO05D006713 4.9e-40 168.3 161 64.6
TWI32G0326 Tripterygium wilfordii HOM05D005516 ORTHO05D006713 6.4e-40 167.9 164 65.9
arahy.Tifrunner.gnm1.ann1.BMR428 Arachis hypogaea HOM05D005516 ORTHO05D006713 1.9e-39 166.4 176 60.2
Ca_08316_v3 Cicer arietinum L. HOM05D005516 ORTHO05D006713 1.9e-39 166.4 168 62.5
Atru.chr2.1522 Acer truncatum HOM05D005516 ORTHO05D006713 4.1e-39 165.2 109 88.1
Prupe.7G015800 Prunus persica HOM05D005516 ORTHO05D006713 5.4e-39 164.9 153 68.6
Glyma.16G035800 Glycine max HOM05D005516 ORTHO05D006713 7.1e-39 164.5 150 62.0
Gorai.013G196100 Gossypium raimondii HOM05D005516 ORTHO05D006713 7.1e-39 164.5 106 84.0
Gorai.004G252300 Gossypium raimondii HOM05D005516 ORTHO05D006713 9.2e-39 164.1 167 60.5
vmacro08774 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 1.2e-38 163.7 148 62.2
Hma1.2p1_0526F.1_g172920 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 6.0e-38 161.4 89 87.6
Rhsim08G0097500 Rhododendron simsii HOM05D005516 ORTHO05D006713 7.8e-38 161.0 147 63.3
FAN26G2397 Fragaria x ananassa HOM05D005516 ORTHO05D006713 1.0e-37 160.6 125 77.6
Phvul.001G105600 Phaseolus vulgaris HOM05D005516 ORTHO05D006713 1.0e-37 160.6 169 63.3
FAN23G0165 Fragaria x ananassa HOM05D005516 ORTHO05D006713 1.3e-37 160.2 125 76.8
MD12G1011900 Malus domestica HOM05D005516 ORTHO05D006713 1.7e-37 159.8 126 76.2
RcHm_v2.0_Chr3g0496031 Rosa chinensis HOM05D005516 ORTHO05D006713 1.7e-37 159.8 141 73.0
FvH4_1g29880 Fragaria vesca HOM05D005516 ORTHO05D006713 2.3e-37 159.5 125 76.8
FAN19G1175 Fragaria x ananassa HOM05D005516 ORTHO05D006713 3.0e-37 159.1 103 77.7
MELO3C008865.2 Cucumis melo HOM05D005516 ORTHO05D006713 3.9e-37 158.7 104 88.5
MD14G1009500 Malus domestica HOM05D005516 ORTHO05D006713 3.9e-37 158.7 126 73.0
VMungo1383G1686 Vigna mungo HOM05D005516 ORTHO05D006713 5.1e-37 158.3 172 60.5
Gohir.A08G219566 Gossypium hirsutum HOM05D005516 ORTHO05D006713 1.1e-36 157.1 165 61.8
PSO339G3932 Papaver somniferum HOM05D005516 ORTHO05D006713 1.1e-36 157.1 146 61.6
Peaxi162Scf00575g00619 Petunia axillaris HOM05D005516 ORTHO05D006713 1.9e-36 156.4 139 59.0
vmacro04358 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 1.9e-36 156.4 148 58.1
Glyma.19G117300 Glycine max HOM05D005516 ORTHO05D006713 3.3e-36 155.6 168 61.3
CSS0039228 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 1.2e-35 153.7 86 86.0
Lj1g0004780 Lotus japonicus HOM05D005516 ORTHO05D006713 1.6e-35 153.3 125 75.2
Gohir.A13G161100 Gossypium hirsutum HOM05D005516 ORTHO05D006713 2.1e-35 152.9 140 62.1
PSO384G4582 Papaver somniferum HOM05D005516 ORTHO05D006713 3.6e-35 152.1 119 69.7
Sopen10g031880 Solanum pennellii HOM05D005516 ORTHO05D006713 4.7e-35 151.8 111 72.1
PGSC0003DMG400028211 Solanum tuberosum HOM05D005516 ORTHO05D006713 4.7e-35 151.8 110 71.8
THA.LOC104820795 Tarenaya hassleriana HOM05D005516 ORTHO05D006713 4.7e-35 151.8 113 73.5
CSS0003853 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 6.2e-35 151.4 85 85.9
Solyc10g081380.2 Solanum lycopersicum HOM05D005516 ORTHO05D006713 6.2e-35 151.4 110 74.5
Actinidia06205 Actinidia chinensis HOM05D005516 ORTHO05D006713 1.1e-34 150.6 120 74.2
arahy.Tifrunner.gnm1.ann1.253MNK Arachis hypogaea HOM05D005516 ORTHO05D006713 1.1e-34 150.6 176 59.1
Hma1.2p1_0106F.1_g051205 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 1.1e-34 150.6 86 81.4
Psat3g086560 Pisum sativum HOM05D005516 ORTHO05D006713 1.8e-34 149.8 145 65.5
Nitab4.5_0000613g0140 Nicotiana tabacum HOM05D005516 ORTHO05D006713 2.4e-34 149.4 141 60.3
vmacro18891 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 2.4e-34 149.4 148 56.1
AL6G28930 Arabidopsis lyrata HOM05D005516 ORTHO05D006713 4.0e-34 148.7 116 70.7
CAN.G128.137 Capsicum annuum HOM05D005516 ORTHO05D006713 1.2e-33 147.1 166 58.4
Cc06_g21500 Coffea canephora HOM05D005516 ORTHO05D006713 1.2e-33 147.1 104 82.7
Oeu044207.1 Olea europaea HOM05D005516 ORTHO05D006713 1.5e-33 146.7 148 58.1
Nitab4.5_0000811g0010 Nicotiana tabacum HOM05D005516 ORTHO05D006713 2.6e-33 146.0 160 62.5
Gohir.D13G166400 Gossypium hirsutum HOM05D005516 ORTHO05D006713 3.4e-33 145.6 140 60.7
Sp6g26410 Schrenkiella parvula HOM05D005516 ORTHO05D006713 4.4e-33 145.2 112 75.0
Hund20711 Selenicereus undatus HOM05D005516 ORTHO05D006713 5.8e-33 144.8 97 73.2
MBI05_g16554_MAGBIO Magnolia biondii HOM05D005516 ORTHO05D006713 9.9e-33 144.1 149 61.7
Aa31LG11G11740 Aethionema arabicum HOM05D005516 ORTHO05D006713 1.3e-32 143.7 116 64.7
C02p25840 Brassica napus HOM05D005516 ORTHO05D006713 1.3e-32 143.7 114 73.7
AT5G17840 Arabidopsis thaliana HOM05D005516 ORTHO05D006713 2.2e-32 142.9 116 72.4
Carub.0006s1607 Capsella rubella HOM05D005516 ORTHO05D006713 2.2e-32 142.9 116 71.6
CARHR195330 Cardamine hirsuta HOM05D005516 ORTHO05D006713 2.2e-32 142.9 97 73.2
Thhalv10014907m.g Eutrema salsugineum HOM05D005516 ORTHO05D006713 2.2e-32 142.9 116 72.4
CSS0031486 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 2.9e-32 142.5 88 79.5
TPR.G34794 Trifolium pratense HOM05D005516 ORTHO05D006713 2.9e-32 142.5 81 82.7
ECA248G2342 Erigeron canadensis HOM05D005516 ORTHO05D006713 3.8e-32 142.1 144 62.5
BcaB01g04919 Brassica carinata HOM05D005516 ORTHO05D006713 6.4e-32 141.4 112 68.8
Sc07g0007460 Simmondsia chinensis HOM05D005516 ORTHO05D006713 6.4e-32 141.4 125 61.6
Lsat_1_v5_gn_5_154420 Lactuca sativa HOM05D005516 ORTHO05D006713 8.4e-32 141.0 102 66.7
HanXRQChr13g0406451 Helianthus annuus HOM05D005516 ORTHO05D006713 1.4e-31 140.2 142 54.2
DCAR_020653 Daucus carota HOM05D005516 ORTHO05D006713 3.2e-31 139.0 118 72.9
Medtr7g086700 Medicago truncatula HOM05D005516 ORTHO05D006713 9.3e-31 137.5 96 84.4
MSTRG.6254 Avicennia marina HOM05D005516 ORTHO05D006713 1.2e-30 137.1 94 72.3
Hund20712 Selenicereus undatus HOM05D005516 ORTHO05D006713 1.6e-30 136.7 93 73.1
SGA_v2.0_scaffold66G22373 Striga asiatica HOM05D005516 ORTHO05D006713 3.5e-30 135.6 103 67.0
A03p08520 Brassica napus HOM05D005516 ORTHO05D006713 6.0e-30 134.8 113 70.8
SGA_v2.0_scaffold69G23215 Striga asiatica HOM05D000039 ORTHO05D000370 6.0e-30 134.8 126 58.7
DCAR_016961 Daucus carota HOM05D005516 ORTHO05D006713 7.8e-30 134.4 73 82.2
Cpa.g.sc161.38 Carica papaya HOM05D005516 ORTHO05D006713 1.0e-29 134.0 90 68.9
Nitab4.5_0000404g0040 Nicotiana tabacum HOM05D005516 ORTHO05D006713 1.7e-29 133.3 81 75.3
Zm00001eb052720 Zea mays HOM05D005516 ORTHO05D006713 3.0e-29 132.5 110 70.0
CDE07G0498 Ceratophyllum demersum HOM05D005516 ORTHO05D006713 3.9e-29 132.1 117 65.8
BcaB01g05159 Brassica carinata HOM05D005516 ORTHO05D006713 8.7e-29 131.0 113 68.1
C03p09930 Brassica napus HOM05D005516 ORTHO05D006713 8.7e-29 131.0 113 68.1
BolC3t13481H Brassica oleracea HOM05D005516 ORTHO05D006713 8.7e-29 131.0 113 68.1
BraA03t10176Z Brassica rapa HOM05D005516 ORTHO05D006713 8.7e-29 131.0 113 68.1
HPP92_000977 Vanilla planifolia HOM05D005516 ORTHO05D006713 1.5e-28 130.2 115 68.7
HPP92_001001 Vanilla planifolia HOM05D005516 ORTHO05D006713 4.3e-28 128.6 114 65.8
MSTRG.26204 Avicennia marina HOM05D005516 ORTHO05D006713 2.1e-27 126.3 116 63.8
SEGI_32239 Sequoiadendron giganteum HOM05D005516 ORTHO05D006713 4.8e-27 125.2 121 53.7
EL10Ac3g06621 Beta vulgaris HOM05D005516 ORTHO05D006713 6.2e-27 124.8 111 72.1
AUR62032011 Chenopodium quinoa HOM05D005516 ORTHO05D006713 1.1e-26 124.0 121 55.4
BcaB05g23282 Brassica carinata HOM05D005516 ORTHO05D006713 5.3e-26 121.7 115 57.4
unitig_0.g583 Utricularia gibba HOM05D005516 ORTHO05D006713 6.9e-26 121.3 140 53.6
AUR62018088 Chenopodium quinoa HOM05D005516 ORTHO05D006713 2.0e-25 119.8 82 69.5
Os03g0656201 Oryza sativa ssp. japonica HOM05D005516 ORTHO05D006713 7.6e-25 117.9 98 70.4
Zm00001eb218270 Zea mays HOM05D005516 ORTHO05D006713 9.9e-25 117.5 97 70.1
Pp3c8_890 Physcomitrium patens HOM05D005516 ORTHO05D006713 2.2e-24 116.3 112 58.9
Ah.13g074870 Amaranthus hybridus HOM05D005516 ORTHO05D006713 4.9e-24 115.2 85 67.1
Peaxi162Scf00575g00620 Petunia axillaris HOM05D005516 ORTHO05D006713 8.4e-24 114.4 135 49.6
Lalb_Chr24g0401101 Lupinus albus HOM05D005516 ORTHO05D006713 5.4e-23 111.7 84 83.3
Aqoxy1G00508 Aquilegia oxysepala HOM05D005516 ORTHO05D006713 3.5e-22 109.0 132 52.3
Mapoly0020s0169 Marchantia polymorpha HOM05D005516 ORTHO05D006713 4.6e-22 108.6 109 57.8
Actinidia07963 Actinidia chinensis HOM05D005516 ORTHO05D006713 5.1e-21 105.1 75 68.0
Ciclev10013836m.g Citrus clementina HOM05D005516 ORTHO05D006713 5.1e-21 105.1 60 80.0
Gohir.D02G044500 Gossypium hirsutum HOM05D005516 ORTHO05D006713 1.9e-20 103.2 84 67.9
Sed0000674 Sechium edule HOM05D005516 ORTHO05D006713 1.8e-18 96.7 104 51.0
Gohir.A06G040900 Gossypium hirsutum HOM05D005516 ORTHO05D006713 4.5e-17 92.0 84 67.9
Gohir.D05G109301 Gossypium hirsutum HOM05D005516 ORTHO05D006713 4.5e-17 92.0 84 67.9
SalBow6G3354 Salvia bowleyana HOM05D005516 ORTHO05D006713 4.5e-17 92.0 56 75.0
BcaC03g15036 Brassica carinata HOM05D005516 ORTHO05D006713 7.6e-17 91.3 68 63.2
BolC2t08658H Brassica oleracea HOM05D005516 ORTHO05D006713 7.6e-17 91.3 68 63.2
Oeu029775.1 Olea europaea HOM05D005516 ORTHO05D006713 9.9e-17 90.9 67 67.2
TAR633G1766 Trochodendron aralioides HOM05D005516 ORTHO05D006713 1.3e-16 90.5 116 53.4
Sabra19G0050600 Salix brachista HOM05D005516 ORTHO05D006713 1.6e-14 83.6 110 54.5
CBR_g28089 Chara braunii HOM05D005516 ORTHO05D006713 3.3e-12 75.9 64 68.8
Nn6g32378 Nelumbo nucifera HOM05D005516 ORTHO05D006713 1.6e-11 73.6 100 45.0
SMO367G1142 Selaginella moellendorffii HOM05D005516 ORTHO05D006713 5.3e-10 68.6 51 62.7


User provided reference genes

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