Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017693 Carpinus fangiana HOM05D000094 ORTHO05D000455 1.2e-88 329.7 156 100.0
Cfa020568 Carpinus fangiana HOM05D000094 ORTHO05D000455 1.0e-23 114.0 69 76.8
Haze_09444 Corylus avellana HOM05D000094 ORTHO05D000455 6.3e-21 104.8 71 70.4
CiPaw.12G119400 Carya illinoinensis HOM05D000094 ORTHO05D000455 5.9e-19 98.2 84 56.0
CiPaw.11G171200 Carya illinoinensis HOM05D000094 ORTHO05D000455 7.7e-19 97.8 74 66.2
QL08p022376 Quercus lobata HOM05D000094 ORTHO05D000455 3.0e-15 85.9 69 56.5
Prupe.4G177400 Prunus persica HOM05D000094 ORTHO05D000455 2.0e-14 83.2 79 55.7
Ciclev10007314m.g Citrus clementina HOM05D000094 ORTHO05D000455 9.7e-14 80.9 67 59.7
TAR627G0928 Trochodendron aralioides HOM05D000094 ORTHO05D000455 1.3e-13 80.5 105 43.8
TAR627G1188 Trochodendron aralioides HOM05D000094 ORTHO05D000455 1.3e-13 80.5 105 43.8
Gohir.D01G048700 Gossypium hirsutum HOM05D000094 ORTHO05D000455 1.7e-13 80.1 76 55.3
Gorai.002G068500 Gossypium raimondii HOM05D000094 ORTHO05D000455 1.7e-13 80.1 76 55.3
VMungo1127G1210 Vigna mungo HOM05D000094 ORTHO05D000455 1.7e-13 80.1 74 51.4
Aqoxy1G02362 Aquilegia oxysepala HOM05D000094 ORTHO05D000455 2.2e-13 79.7 69 55.1
Aqoxy367s001 Aquilegia oxysepala HOM05D000094 ORTHO05D000455 2.2e-13 79.7 69 55.1
Dinv14929 Davidia involucrata HOM05D000094 ORTHO05D000455 2.2e-13 79.7 48 77.1
TWI38G2042 Tripterygium wilfordii HOM05D000094 ORTHO05D000455 2.2e-13 79.7 65 56.9
Dinv20188 Davidia involucrata HOM05D000094 ORTHO05D000455 2.8e-13 79.3 69 56.5
RcHm_v2.0_Chr5g0032901 Rosa chinensis HOM05D000094 ORTHO05D000455 3.7e-13 79.0 69 55.1
CSS0040825 Camellia sinensis var. sinensis HOM05D000094 ORTHO05D000455 6.3e-13 78.2 79 49.4
MD11G1251700 Malus domestica HOM05D000094 ORTHO05D000455 6.3e-13 78.2 76 48.7
CAN.G162.45 Capsicum annuum HOM05D000094 ORTHO05D000455 8.2e-13 77.8 76 53.9
Glyma.12G163062 Glycine max HOM05D000094 ORTHO05D000455 8.2e-13 77.8 67 53.7
Sabra11G0102500 Salix brachista HOM05D000094 ORTHO05D000455 8.2e-13 77.8 74 52.7
CSS0001945 Camellia sinensis var. sinensis HOM05D000094 ORTHO05D000455 1.1e-12 77.4 71 50.7
Duzib213G0677 Durio zibethinus HOM05D000094 ORTHO05D000455 1.1e-12 77.4 69 58.0
FvH4_3g19680 Fragaria vesca HOM05D000094 ORTHO05D000455 1.4e-12 77.0 58 60.3
Gohir.A01G062100 Gossypium hirsutum HOM05D000094 ORTHO05D000455 1.4e-12 77.0 76 52.6
Rhsim06G0201100 Rhododendron simsii HOM05D000094 ORTHO05D000455 1.4e-12 77.0 54 59.3
Solyc07g063000.4 Solanum lycopersicum HOM05D000094 ORTHO05D000455 1.8e-12 76.6 77 49.4
Phvul.011G161000 Phaseolus vulgaris HOM05D000094 ORTHO05D000455 2.4e-12 76.3 74 47.3
Cc03_g11610 Coffea canephora HOM05D000094 ORTHO05D000455 4.1e-12 75.5 69 52.2
Cc05_g11860 Coffea canephora HOM05D000094 ORTHO05D000455 4.1e-12 75.5 69 52.2
FAN11G1613 Fragaria x ananassa HOM05D000094 ORTHO05D000455 4.1e-12 75.5 58 58.6
FAN25G0072 Fragaria x ananassa HOM05D000094 ORTHO05D000455 5.3e-12 75.1 58 58.6
Gohir.A04G032900 Gossypium hirsutum HOM05D000094 ORTHO05D000455 5.3e-12 75.1 69 56.5
Gorai.009G381200 Gossypium raimondii HOM05D000094 ORTHO05D000455 5.3e-12 75.1 59 59.3
Actinidia09694 Actinidia chinensis HOM05D000094 ORTHO05D000455 7.0e-12 74.7 50 68.0
PGSC0003DMG400012443 Solanum tuberosum HOM05D000094 ORTHO05D000455 7.0e-12 74.7 77 48.1
Glyma.12G225800 Glycine max HOM05D000094 ORTHO05D000455 9.1e-12 74.3 55 60.0
Lalb_Chr20g0109571 Lupinus albus HOM05D000094 ORTHO05D000455 9.1e-12 74.3 56 58.9
Potri.011G116900 Populus trichocarpa HOM05D000094 ORTHO05D000455 9.1e-12 74.3 47 66.0
vmacro11881 Vaccinium macrocarpon HOM05D000094 ORTHO05D000455 9.1e-12 74.3 68 52.9
Glyma.06G238700 Glycine max HOM05D000094 ORTHO05D000455 1.2e-11 73.9 63 54.0
Thecc.07G094600 Theobroma cacao HOM05D000094 ORTHO05D000455 1.2e-11 73.9 67 56.7
Sopen07g031190 Solanum pennellii HOM05D000094 ORTHO05D000455 1.6e-11 73.6 65 52.3
Actinidia12800 Actinidia chinensis HOM05D000094 ORTHO05D000455 2.0e-11 73.2 46 69.6
Peaxi162Scf00069g00163 Petunia axillaris HOM05D000094 ORTHO05D000455 2.0e-11 73.2 46 65.2
Nitab4.5_0001241g0120 Nicotiana tabacum HOM05D000094 ORTHO05D000455 2.6e-11 72.8 67 52.2
Sabra16G0261200 Salix brachista HOM05D000094 ORTHO05D000455 2.6e-11 72.8 47 61.7
VMungo1080G0770 Vigna mungo HOM05D000094 ORTHO05D000455 2.6e-11 72.8 60 55.0
Potri.001G398500 Populus trichocarpa HOM05D000094 ORTHO05D000455 5.9e-11 71.6 57 52.6
GSVIVG01014303001 Vitis vinifera HOM05D000094 ORTHO05D000455 7.7e-11 71.2 94 44.7
Phvul.005G073800 Phaseolus vulgaris HOM05D000094 ORTHO05D000455 1.3e-10 70.5 60 53.3
Glyma.13G275100 Glycine max HOM05D000094 ORTHO05D000455 1.7e-10 70.1 40 72.5
Nitab4.5_0001148g0060 Nicotiana tabacum HOM05D000094 ORTHO05D000455 1.7e-10 70.1 58 55.2
Psat5g241880 Pisum sativum HOM05D000094 ORTHO05D000455 1.7e-10 70.1 50 68.0
PGR083G2473 Punica granatum HOM05D000094 ORTHO05D000455 1.7e-10 70.1 65 47.7
SalBow7G1868 Salvia bowleyana HOM05D000094 ORTHO05D000455 2.2e-10 69.7 57 54.4
DCAR_013115 Daucus carota HOM05D000094 ORTHO05D000455 3.8e-10 68.9 72 47.2
PSO675G7006 Papaver somniferum HOM05D000094 ORTHO05D000455 5.0e-10 68.6 66 48.5
Lsat_1_v5_gn_7_104021 Lactuca sativa HOM05D000094 ORTHO05D000455 8.5e-10 67.8 68 48.5
Nn1g06474 Nelumbo nucifera HOM05D000094 ORTHO05D000455 1.1e-09 67.4 50 62.0
EL10Ac4g08213 Beta vulgaris HOM05D000094 ORTHO05D000455 1.9e-09 66.6 59 52.5
Ca_03512_v3 Cicer arietinum L. HOM05D000094 ORTHO05D000455 1.9e-09 66.6 45 68.9
Ca_03519_v3 Cicer arietinum L. HOM05D000094 ORTHO05D000455 1.9e-09 66.6 45 68.9
Lj8P154T57 Lonicera japonica HOM05D000094 ORTHO05D000455 1.9e-09 66.6 46 67.4
ECA236G0396 Erigeron canadensis HOM05D000094 ORTHO05D000455 4.2e-09 65.5 66 45.5
Migut.H01950 Erythranthe guttata HOM05D000094 ORTHO05D000455 4.2e-09 65.5 71 45.1
HanXRQChr11g0351971 Helianthus annuus HOM05D000094 ORTHO05D000455 4.2e-09 65.5 55 56.4
Lj3g0012716 Lotus japonicus HOM05D000094 ORTHO05D000455 4.2e-09 65.5 44 61.4
Medtr2g078810 Medicago truncatula HOM05D000094 ORTHO05D000455 4.2e-09 65.5 38 71.1
MSTRG.6825 Avicennia marina HOM05D000094 ORTHO05D000455 1.2e-08 63.9 61 54.1
Lalb_Chr25g0286271 Lupinus albus HOM05D000094 ORTHO05D000455 1.6e-08 63.5 40 62.5
A10p11280 Brassica napus HOM05D000094 ORTHO05D000455 2.1e-08 63.2 70 45.7
BraA10t43220Z Brassica rapa HOM05D000094 ORTHO05D000455 2.1e-08 63.2 70 45.7
THA.LOC104811872 Tarenaya hassleriana HOM05D000094 ORTHO05D000455 2.1e-08 63.2 48 60.4
Eucgr.F01155 Eucalyptus grandis HOM05D000094 ORTHO05D000455 3.6e-08 62.4 46 54.3
C02p17880 Brassica napus HOM05D000094 ORTHO05D000455 8.0e-08 61.2 63 46.0
SGA_v2.0_scaffold73G24247 Striga asiatica HOM05D000094 ORTHO05D000455 8.0e-08 61.2 68 48.5
BcaC03g14376 Brassica carinata HOM05D000094 ORTHO05D000455 1.4e-07 60.5 63 46.0
BolC2t07919H Brassica oleracea HOM05D000094 ORTHO05D000455 1.4e-07 60.5 63 46.0
AUR62019446 Chenopodium quinoa HOM05D000094 ORTHO05D000455 1.4e-07 60.5 61 47.5
Carub.0008s1418 Capsella rubella HOM05D000094 ORTHO05D000455 1.8e-07 60.1 68 44.1
AT5G53890 Arabidopsis thaliana HOM05D000094 ORTHO05D000455 3.0e-07 59.3 66 42.4
CsaV3_3G019520 Cucumis sativus L. HOM05D000094 ORTHO05D000455 3.0e-07 59.3 57 43.9
SGA_v2.0_scaffold70G23682 Striga asiatica HOM05D000094 ORTHO05D000455 4.0e-07 58.9 39 56.4
TPR.G7959 Trifolium pratense HOM05D000094 ORTHO05D000455 4.0e-07 58.9 39 69.2
MELO3C019404.2 Cucumis melo HOM05D000094 ORTHO05D000455 5.2e-07 58.5 54 48.1
Thhalv10012554m.g Eutrema salsugineum HOM05D000094 ORTHO05D000455 5.2e-07 58.5 64 46.9
Sed0020673 Sechium edule HOM05D000094 ORTHO05D000455 6.7e-07 58.2 57 45.6
Sc16g0007100 Simmondsia chinensis HOM05D000094 ORTHO05D000455 6.7e-07 58.2 48 52.1
Aa31LG3G10050 Aethionema arabicum HOM05D000094 ORTHO05D000455 8.8e-07 57.8 57 43.9
A02p10770 Brassica napus HOM05D000094 ORTHO05D000455 8.8e-07 57.8 55 47.3
BraA02t06137Z Brassica rapa HOM05D000094 ORTHO05D000455 8.8e-07 57.8 55 47.3
MBI07_g31018_MAGBIO Magnolia biondii HOM05D000094 ORTHO05D000455 8.8e-07 57.8 42 59.5
BcaC04g20408 Brassica carinata HOM05D000094 ORTHO05D000455 1.2e-06 57.4 50 48.0
BolC9t57272H Brassica oleracea HOM05D000094 ORTHO05D000455 1.2e-06 57.4 50 48.0
AL8G28960 Arabidopsis lyrata HOM05D000094 ORTHO05D000455 1.5e-06 57.0 68 44.1
ClCG05G009270 Citrullus lanatus HOM05D000094 ORTHO05D000455 2.0e-06 56.6 57 40.4
C09p43900 Brassica napus HOM05D000094 ORTHO05D000455 2.6e-06 56.2 50 46.0
MSTRG.12898 Avicennia marina HOM05D000094 ORTHO05D000455 3.3e-06 55.8 74 40.5
BcaB05g22083 Brassica carinata HOM05D000094 ORTHO05D000455 3.3e-06 55.8 62 43.5
AUR62036178 Chenopodium quinoa HOM05D000094 ORTHO05D000455 5.7e-06 55.1 57 47.4


User provided reference genes

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